cluster # 11422

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Oryza sativa
cluster # 11422 cluster # 11422 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11422#0 length = 2662 sequences # 8

consensus_11422#1 length = 448 sequences # 1

consensusID : consensus_11422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2662
fasta sequence

                              [AAAACATGTCCTTGTCGATCTGAATCTTTCAGCTCTCATCGCTCGACACCCAACCACTCGATCATAAGCCAAGCAGTTTATGTTAGCCAATTGCTACAATATCCTTAAGAGGCGTCAAGGCGAAGTGTCACGGGAAAAAAAATGGGTCGTATGATTGCCAAATTTTCTGCACACTTCGTTCTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGCGATGGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACC-TTACCGTGGACGGCCTCGCCACCGTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCGTTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAACGCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGTCCTTCTCCACGGCTTTCGTGTTCGCCATCGTGTCCGGGTACGACGGCCTGAGCGACCACGGGCTCGCGTTCGTGGTCGCGCCGACGGCGAACCTCTCGGCGGCGAACGCCGGGCAGTACCTGGGCTTCCTCAACGCGACGAACGGCACGGCGAGCGGCCAAATCCTGGCCGTCGAGCTGGACACCATCATGAACCCCGAGTTCCACGACATCAGCAGCAACCACGTCGGCATCGACGCCAACAGCCTCATGTCGACGCAGGCACGGCCGGCCGGCTACTACGGCGACGGCGACGGCGCCTTCCGTGAGCTCAGGCTGAACAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTGTCTCCCGTGCAAGTGCCTAAGCCCAAGAAGCCTCTGCTCTCCCAGGCCATCGACCTCTCCACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGAACACCCACCACTACGTGCTCGGCTGGAGCTTCGGCTTCGACGGGCCAGCTCCTCCCCTCGATCTCTCCAAGCTTCCCCGGCTGCCACGCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATTGTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTAGCTGCCGTCTTCTTCGTCGTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCGCACCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTGCTGGGTGTTGGAGGGTTTGGGAGAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAGATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATAAGGGAGTTCGTCGCGGAAGTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGCCGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTACTTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGCGTCGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGACATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGCCTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCAT-GGGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTCGCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGCTCAC-GGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTTCTGAAGCTGGGTTT--GTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGC-GTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTGAGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATTCATTCATCATGTCGGGCGGCCCCCGGTCGGCGACAAGCATTGGCACC-GTGTCTGGTGCATCATCTATGACTATTATGTCGGAGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCAAGTTCTTAAGTGACTTTCTTTCTTGTTCCTTGAAATGACAAGCATTTGAAAGAGGAGATAGTAGTGTGTTAAGTTACCTACCAAATTCACAGTAGGCATTTATGTTTACACTACCTATTAGCTATGCTTCCTCGNGCATCTTAAGATAGTTGGGTAGAATGGTGAGTTGCTTGGCTGCTTCAAAATTTCTCTGTGAACTAACTCTGCAGCCTGCTTGCTTTGTTCAAGAATNTGGCAACTTGTTCTGGGTTTATCAACNCCAGTTGCTTGGAACCAGGTTATTCATTTATGCAATAACCAAACATTCTCTAACCNTCAAGATGTTNTGANATGGNNATTTNNTNNCNNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK110940             [AAAACATGTCCTTGTCGATCTGAATCTTTCAGCTCTCATCGCTCGACACCCAACCACTCGATCATAAGCCAAGCAGTTTATGTTAGCCAATTGCTACAATATCCTTAAGAGGCGTCAAGGCGAAGTGTCACGGGAAAAAAAATGGGTCGTATGATTGCCAAATTTTCTGCACACTTCGTTCTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGCGATGGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACC TTACCGTGGACGGCCTCGCCACCGTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCGTTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAACGCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGTCCTTCTCCACGGCTTTCGTGTTCGCCATCGTGTCCGGGTACGACGGCCTGAGCGACCACGGGCTCGCGTTCGTGGTCGCGCCGACGGCGAACCTCTCGGCGGCGAACGCCGGGCAGTACCTGGGCTTCCTCAACGCGACGAACGGCACGGCGAGCGGCCAAATCCTGGCCGTCGAGCTGGACACCATCATGAACCCCGAGTTCCACGACATCAGCAGCAACCACGTCGGCATCGACGCCAACAGCCTCATGTCGACGCAGGCACGGCCGGCCGGCTACTACGGCGACGGCGACGGCGCCTTCCGTGAGCTCAGGCTGAACAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTGTCTCCCGTGCAAGTGCCTAAGCCCAAGAAGCCTCTGCTCTCCCAGGCCATCGACCTCTCCACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGAACACCCACCACTACGTGCTCGGCTGGAGCTTCGGCTTCGACGGGCCAGCTCCTCCCCTCGATCTCTCCAAGCTTCCCCGGCTGCCACGCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATTGTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTAGCTGCCGTCTTCTTCGTCGTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCGCACCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTGCTGGGTGTTGGAGGGTTTGGGAGAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAGATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATAAGGGAGTTCGTCGCGGAAGTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGCCGCAAGAATGAACTCCTGTTGGTGTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK101924             [                                                                                                                                         AAAAATGGGTCGTATGATTGCCAAATTTTCTGCACACTTCGTTCTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGCGATGGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACC TTACCGTGGACGGCCTCGCCACCGTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCGTTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAACGCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGTCCTTCTCCACGGCTTTCGTGTTCGCCATCGTGTCCGGGTACGACGGCCTGAGCGACCACGGGCTCGCGTTCGTGGTCGCGCCGACGGCGAACCTCTCGGCGGCGAACGCCGGGCAGTACCTGGGCTTCCTCAACGCGACGAACGGCACGGCGAGCGGCCAAATCCTGGCCGTCGAGCTGGACACCATCATGAACCCCGAGTTCCACGACATCAGCAGCAACCACGTCGGCATCGACGCCAACAGCCTCATGTCGACGCAGGCACGGCCGGCCGGCTACTACGGCGACGGCGACGGCGCCTTCCGTGAGCTCAGGCTGAACAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTGTCTCCCGTGCAAGTGCCTAAGCCCAAGAAGCCTCTGCTCTCCCAGGCCATCGACCTCTCCACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGAACACCCACCACTACGTGCTCGGCTGGAGCTTCGGCTTCGACGGGCCAGCTCCTCCCCTCGATCTCTCCAAGCTTCCCCGGCTGCCACGCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATTGTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTAGCTGCCGTCTTCTTCGTCGTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCGCACCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTGCTGGGTGTTGGAGGGTTTGGGAGAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAGATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATAAGGGAGTTCGTCGCGGAAGTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGCCGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTACTTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGCGTCGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGACATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGCCTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCAT GGGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTCGCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGCTCAC GGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTTCTGAAGCTGGGTTT  GTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGC GTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTGAGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATTCATTCATCATGTCGGGCGGCCCCCGGTCGGCGGCAAGCATTGGCACC GTGTCTGGTGCATCATCTATGACTATTATGTCGGAGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCAAGTTCTTAAGTGACTTTCTTTC                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB663880             [                                                                                                                                                   CGTATGATTGCCAAATTTTCTGCACACTTCGTTCTTCTCCTCGAGTTCATCTTGAGCAACGACGTGGTGGTGGCCTCTGCCGCCGGCGGCGATGGCCAGATCACGTACCAGGGGTTCGCGGCGGCGAACC TTACCGTGGACGGCCTCACCACCGTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCATGCGAAAGCGCACGCGTTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAACGCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C72355               [                                                                                                                                                                     TCTGCACACTTCGTTCTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGGAATGGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACCTTTACCGTGGACGGCCTCGCCACCGTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCNTTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAACG CANCNGTGGCGCCGGAGCCGANGTGGCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C22528               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGTGCAGTTACTAGGCTATTGCCGCCGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTACTTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGCGTCGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGACATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGCCTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCATGGGGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTCGCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB096606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGCAGTTACTAGGCTATTGCCGCCGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTACTTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGCGTTGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGACATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGCCTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACGCATGTGGTTGGCACCAT GGGCTACCTAGCGCCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTCGCGTTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGCTCACGGGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTTCTGAAGCTGGGTTTTGGTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGCGGTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTGAGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATTCATTCATCATGTCGGGCGGCCCCCGGTCGGCGACAAGCATTGGCACCGGGGTCTGGNGCATCATCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB663881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCGTCGCATCAGGTTTGTTGTACCTACACGAGGATGNGGAGCAAGTAGTCATCCATCGAGACATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGCCTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCAT GGGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTCGCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGCTCAC GGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTTCTGAAGCTGGGTTT  GTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGC GTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTGAGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATTCATTCATCATGTCGGGCGGCCCCCGGTCGGCGACAAGCATTGGCACC GTGTCTGGTGCATCATCTATGACTATTATGTCGGAGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCAAGTTCTTAAGTGACTTTCTTTCTTGTTCCTTGAAATGACAAGCATTTGAAAGAGGAGATAGTAGTGTGTTAAGTTACCTACCAAATTCACAGTAGGCATTTATGTTTACACTACCTATTAG                                                                                                                                                                                                                                                                        ]
[+] EMBL C22529               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACTATTATGTCGGNGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCAAGTTCTTAAGTGACTTTCTTTCTTGTTCCTTGAAATGACAAGCATTTGAAAGAGGAGATAGTAGTGTGTTAAGTTNCCTACCAAATTCNCAGTAGGCATTTATGTTTACACTACCTATTAGCTATGCTTCCTCGNGCATCTTAAGATAGTTGGGTAGAATGGTGAGTTGCTTGGCTGCTTCAAAATTTCTCTGTGAACTAACTCTGCAGCCTGCTTGCTTTGTTCAAGAATNTGGCAACTTGTTCTGGGTTTATCAACNCCAGTTGCTTGGAACCAGGTTATTCATTTATGCAATAACCAAACATTCTCTAACCNTCAAGATGTTNTGANATGGNNATTTNNTNNCNNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11422#0
AAAACATGTCCTTGTCGATCTGAATCTTTCAGCTCTCATCGCTCGACACCCAACCACTCG
ATCATAAGCCAAGCAGTTTATGTTAGCCAATTGCTACAATATCCTTAAGAGGCGTCAAGG
CGAAGTGTCACGGGAAAAAAAATGGGTCGTATGATTGCCAAATTTTCTGCACACTTCGTT
CTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGCGAT
GGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACCTTACCGTGGACGGCCTCGCCACC
GTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCG
TTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAAC
GCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGTCCTTCTCCACGGCTTTCGTGTTCGCC
ATCGTGTCCGGGTACGACGGCCTGAGCGACCACGGGCTCGCGTTCGTGGTCGCGCCGACG
GCGAACCTCTCGGCGGCGAACGCCGGGCAGTACCTGGGCTTCCTCAACGCGACGAACGGC
ACGGCGAGCGGCCAAATCCTGGCCGTCGAGCTGGACACCATCATGAACCCCGAGTTCCAC
GACATCAGCAGCAACCACGTCGGCATCGACGCCAACAGCCTCATGTCGACGCAGGCACGG
CCGGCCGGCTACTACGGCGACGGCGACGGCGCCTTCCGTGAGCTCAGGCTGAACAGCCGC
CAGCCGATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTG
TCTCCCGTGCAAGTGCCTAAGCCCAAGAAGCCTCTGCTCTCCCAGGCCATCGACCTCTCC
ACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGAACACC
CACCACTACGTGCTCGGCTGGAGCTTCGGCTTCGACGGGCCAGCTCCTCCCCTCGATCTC
TCCAAGCTTCCCCGGCTGCCACGCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATT
GTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTAGCTGCCGTCTTCTTCGTC
GTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCG
CACCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTG
CTGGGTGTTGGAGGGTTTGGGAGAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAG
ATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATAAGGGAGTTCGTCGCGGAA
GTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGC
CGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTAC
TTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGC
GTCGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGAC
ATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGC
CTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCATG
GGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTC
GCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAG
CACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATC
GTTGGTGCGGCGGATCCACGGCTCACGGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTT
CTGAAGCTGGGTTTGTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAAT
GTCATGCAATACCTGGAGCGTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTG
AGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATTCATTCATCATGTCGGGC
GGCCCCCGGTCGGCGACAAGCATTGGCACCGTGTCTGGTGCATCATCTATGACTATTATG
TCGGAGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCAAGT
TCTTAAGTGACTTTCTTTCTTGTTCCTTGAAATGACAAGCATTTGAAAGAGGAGATAGTA
GTGTGTTAAGTTACCTACCAAATTCACAGTAGGCATTTATGTTTACACTACCTATTAGCT
ATGCTTCCTCGNGCATCTTAAGATAGTTGGGTAGAATGGTGAGTTGCTTGGCTGCTTCAA
AATTTCTCTGTGAACTAACTCTGCAGCCTGCTTGCTTTGTTCAAGAATNTGGCAACTTGT
TCTGGGTTTATCAACNCCAGTTGCTTGGAACCAGGTTATTCATTTATGCAATAACCAAAC
ATTCTCTAACCNTCAAGATGTTNTGANATGGNNATTTNNTNNCNNGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [GACGAGACAAGGGGGAAGGCGTNACCCTTAACCGACGTGTTCGCGTTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGGTNACGGGGAAGTTCGATNTNTTTGAGGTGGCCCTCGTTCTGAAGCTGGGTTTGTTGNGTNCGNACCCGCTACCCCCCCCCCGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGCGTGGCGGCAAGTAAAANAAAAANCTATCGNCGAGCTACGTGAGCTATACCATGATGGCCANAATGCAAACNAAGGNTTNGATNTCATTNATCATGTCGGACGGTCCCCGGTNCGTNGACAAGCATTGTCNCCGNCNTCTGGTGCATC]

[+] EMBL CA766567             [GACGAGACAAGGGGGAAGGCGTNACCCTTAACCGACGTGTTCGCGTTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCACGGGTNACGGGGAAGTTCGATNTNTTTGAGGTGGCCCTCGTTCTGAAGCTGGGTTTGTTGNGTNCGNACCCGCTACCCCCCCCCCGGCCCAGCATGCGGAATGTCATGCAATACCTGGAGCGTGGCGGCAAGTAAAANAAAAANCTATCGNCGAGCTACGTGAGCTATACCATGATGGCCANAATGCAAACNAAGGNTTNGATNTCATTNATCATGTCGGACGGTCCCCGGTNCGTNGACAAGCATTGTCNCCGNCNTCTGGTGCATC]




>consensus_11422#1
GACGAGACAAGGGGGAAGGCGTNACCCTTAACCGACGTGTTCGCGTTCGGGGTGTTCTTA
TTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAGCACAACAAACGGGTGGTG
CTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATCGTTGGTGCGGCGGATCCA
CGGGTNACGGGGAAGTTCGATNTNTTTGAGGTGGCCCTCGTTCTGAAGCTGGGTTTGTTG
NGTNCGNACCCGCTACCCCCCCCCCGGCCCAGCATGCGGAATGTCATGCAATACCTGGAG
CGTGGCGGCAAGTAAAANAAAAANCTATCGNCGAGCTACGTGAGCTATACCATGATGGCC
ANAATGCAAACNAAGGNTTNGATNTCATTNATCATGTCGGACGGTCCCCGGTNCGTNGAC
AAGCATTGTCNCCGNCNTCTGGTGCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11422#0      AAAACATGTCCTTGTCGATCTGAATCTTTCAGCTCTCATCGCTCGACACCCAACCACTCG 60
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ATCATAAGCCAAGCAGTTTATGTTAGCCAATTGCTACAATATCCTTAAGAGGCGTCAAGG 120
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CGAAGTGTCACGGGAAAAAAAATGGGTCGTATGATTGCCAAATTTTCTGCACACTTCGTT 180
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CTTCTCCTCGTGTTCAGCTTGAGCAACGACGTGGTGGTGGCCTCGGCCGCCGGCGGCGAT 240
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GGCCAGTTCACGTACCAGGGGTTCGCGGCGGCGAACCTTACCGTGGACGGCCTCGCCACC 300
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTCACGGCGAGCGGGCTCCTCGTGCTCACCAACTTCACGTACCAGGCGAAAGCGCACGCG 360
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      TTTCACCCGGCGCCTCTCCGCTTCCTCGGCGAGTCCTCCACGGCGGCGGCGGGGGCGAAC 420
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GCCAGCGGTGGCGCCGGAGCCGACGTGGCGCGGTCCTTCTCCACGGCTTTCGTGTTCGCC 480
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ATCGTGTCCGGGTACGACGGCCTGAGCGACCACGGGCTCGCGTTCGTGGTCGCGCCGACG 540
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GCGAACCTCTCGGCGGCGAACGCCGGGCAGTACCTGGGCTTCCTCAACGCGACGAACGGC 600
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ACGGCGAGCGGCCAAATCCTGGCCGTCGAGCTGGACACCATCATGAACCCCGAGTTCCAC 660
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GACATCAGCAGCAACCACGTCGGCATCGACGCCAACAGCCTCATGTCGACGCAGGCACGG 720
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CCGGCCGGCTACTACGGCGACGGCGACGGCGCCTTCCGTGAGCTCAGGCTGAACAGCCGC 780
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CAGCCGATGCAGGTGTGGGTGGACTACGACGGCCAGGCCAAGCAGCTCAACGTGACGCTG 840
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      TCTCCCGTGCAAGTGCCTAAGCCCAAGAAGCCTCTGCTCTCCCAGGCCATCGACCTCTCC 900
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ACGGTCATGGCCGAGGAGATGTACGTCGGCTTCTCGTCGGCGACGGGCGTCGTGAACACC 960
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CACCACTACGTGCTCGGCTGGAGCTTCGGCTTCGACGGGCCAGCTCCTCCCCTCGATCTC 1020
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      TCCAAGCTTCCCCGGCTGCCACGCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATT 1080
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTAGCTGCCGTCTTCTTCGTC 1140
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCG 1200
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CACCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTG 1260
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CTGGGTGTTGGAGGGTTTGGGAGAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAG 1320
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATAAGGGAGTTCGTCGCGGAA 1380
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGC 1440
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CGCAAGAATGAACTCCTGTTGGTGTACGATTACATGGCGAATGGTAGTCTTGACAAGTAC 1500
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      TTGCATGAGAGAAATGTTACAACTCTATTTTGGCCCGAGCGGCTCTGGATCATCAAAGGC 1560
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTCGCATCAGGTTTGTTGTACCTACACGAGGATTGGGAGCAAGTAGTCATCCATCGAGAC 1620
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      ATAAAAGCGAGCAACGTGCTCTTAGACAGTGCAATGAACGGGCGGCTAGGTGATTTTGGC 1680
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CTGGCAAGGCTGTACGACCATGGCACCGACCCCAAAACAACACATGTGGTTGGCACCATG 1740
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GGCTACCTAGCACCAGAGCTCGTCCGTACAGGGAAGGCGTCACCCTTAACCGACGTGTTC 1800
consensus_11422#1      ------------------GACGAGACAAGGGGGAAGGCGTNACCCTTAACCGACGTGTTC 42
                                           **     *  ********** *******************

consensus_11422#0      GCATTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAG 1860
consensus_11422#1      GCGTTCGGGGTGTTCTTATTGGAGGTGACATGCGGGCGGAGGCCGATCGAGACCGACGAG 102
                       ** *********************************************************

consensus_11422#0      CACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATC 1920
consensus_11422#1      CACAACAAACGGGTGGTGCTAGTCGACTTGGTGCTTGAGCACCACCGCAATGGCTCGATC 162
                       ************************************************************

consensus_11422#0      GTTGGTGCGGCGGATCCACGGCTCACGGGGAAGTTCGATGTGGAGGAGGTGGCCCTCGTT 1980
consensus_11422#1      GTTGGTGCGGCGGATCCACGGGTNACGGGGAAGTTCGATNTNTTTGAGGTGGCCCTCGTT 222
                       ********************* * *************** *    ***************

consensus_11422#0      CTGAAGCTGGGTTTGTTGTGTTCGCACCCGCTACCCGGTGCGAGGCCCAGCATGCGGAAT 2040
consensus_11422#1      CTGAAGCTGGGTTTGTTGNGTNCGNACCCGCTACCCCCCCCCCGGCCCAGCATGCGGAAT 282
                       ****************** ** ** ***********    *  *****************

consensus_11422#0      GTCATGCAATACCTGGAGCGTGGCGGTAAGTCGGCTCCTGACCTATCGCCGAGCTACGTG 2100
consensus_11422#1      GTCATGCAATACCTGGAGCGTGGCGGCAAGTAAAANAAAAANCTATCGNCGAGCTACGTG 342
                       ************************** ****         * ****** ***********

consensus_11422#0      AGCTATAGCATGATGGCGATAATGCAAAACGAAGGGTTCGATT-CATTCATCATGTCGGG 2159
consensus_11422#1      AGCTATACCATGATGGCCANAATGCAAA-CNAAGGNTTNGATNTCATTNATCATGTCGGA 401
                       ******* ********* * ******** * **** ** ***  **** ********** 

consensus_11422#0      CGGCCCCCGGTCGG-CGACAAGCATTGGCACCGT-GTCTGGTGCATCATCTATGACTATT 2217
consensus_11422#1      CGGTCCCCGGTNCGTNGACAAGCATTGTCNCCGNCNTCTGGTGCATC------------- 448
                       *** *******  *  *********** * ***   ***********             

consensus_11422#0      ATGTCGGAGGGAAGATAAAATTCAGTGCTTGCAATAAGTCTTTTGATTCCTACTGACTCA 2277
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      AGTTCTTAAGTGACTTTCTTTCTTGTTCCTTGAAATGACAAGCATTTGAAAGAGGAGATA 2337
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GTAGTGTGTTAAGTTACCTACCAAATTCACAGTAGGCATTTATGTTTACACTACCTATTA 2397
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      GCTATGCTTCCTCGNGCATCTTAAGATAGTTGGGTAGAATGGTGAGTTGCTTGGCTGCTT 2457
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      CAAAATTTCTCTGTGAACTAACTCTGCAGCCTGCTTGCTTTGTTCAAGAATNTGGCAACT 2517
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      TGTTCTGGGTTTATCAACNCCAGTTGCTTGGAACCAGGTTATTCATTTATGCAATAACCA 2577
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      AACATTCTCTAACCNTCAAGATGTTNTGANATGGNNATTTNNTNNCNNGAAAAAAAAAAA 2637
consensus_11422#1      ------------------------------------------------------------
                                                                                   

consensus_11422#0      AAAAAAAAAAAAAAAAAAAAAAAAA 2662
consensus_11422#1      -------------------------