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Oryza sativa
cluster # 11423 cluster # 11423       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11423#0 length = 1324 sequences # 3  
consensus_11423#1 length = 1319 sequences # 5  
consensus_11423#2 length = 339 sequences # 1  

consensusID : consensus_11423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1324
fasta sequence
                              [GGAGAGCGCGGCGGCGATCGATGGCGGCGGCCACAGTAAGCAACAAGAGGGTGATCCTAAAACGATACGTGACTAGGCTTCTCTCGGAGGATGATATGGAGGTGGTGACGGTGGAGGCGCCGCCGCTGGATGTGCCAACGGGGTCGAAGGGGGTGGTGGTGAAGAATCTGTATGTTTCGTGTGACCCTTACATGCGCAATCGGATGACCCACCACGAGTTGCCCAGCTACATCCCGGATTTTGTCCCAGGGGAGGTTTTGGAAAATTTTGGCGTGATGAAGGTGATATCATCTGGGCACCTGGATTTCAAGGCAGGTGATCTTGTTTGGGGGATGACCGGATGGGAAGAATATACCGTGATCAACAATCCAGAATCGCTTTTCAAGATCAATCACCCTGAACTTCCTCTATCCTACTACACTGGTATTCTAGGAATGCCAGGGCTTACCGCCTATGCTGGATTCTTTGACGTGCCCAAGCCAAAGAAAGGTGAATATGTCTTTATCTCAGGAGCATCTGGTGCTGTAGGTCAGGTTGTTGGGCAGCTTGCTAAGATCACAGGTTGCTACGTGATCGGCAGTGCTGGTTATGACGAAAAGGTCAACTTATTGAAGAGTAAGTTTGGCTTTGATGATGCTTTCAACTACAAGAAGGAACAAGATCTTGAGGCAGCCCTAAGGAGAT-ATTTTCCAGAGGGTA-TTGATATCTACTATGAGAATGTGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGTCGGATTGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACTACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTACCGGTTCGAGGAGGAGATGGCTGGGTACC-TGAAGGAAGAAAAGG-TGTCATACGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTTCACTGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTTGGCATGGGAGTTGGCATTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTTTCCAGTTTGGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAAAACAATGATATTGACGGGAGTACTTCCCCAAAATGACTTTTTTTTATTTATTGCACCTGATTTATTGAAAGAGATCGTGCTCGCGATATCTTTTTTCACTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]

[+] EMBL AK070393             [GGAGAGCGCGGCGGCGATCGATGGCGGCGGCCACAGTAAGCAACAAGAGGGTGATCCTAAAACGATACGTGACTAGGCTTCTCTCGGAGGATGATATGGAGGTGGTGACGGTGGAGGCGCCGCCGCTGGATGTGCCAACGGGGTCGAAGGGGGTGGTGGTGAAGAATCTGTATGTTTCGTGTGACCCTTACATGCGCAATCGGATGACCCACCACGAGTTGCCCAGCTACATCCCGGATTTTGTCCCAGGGGAGGTTTTGGAAAATTTTGGCGTGATGAAGGTGATATCATCTGGGCACCTGGATTTCAAGGCAGGTGATCTTGTTTGGGGGATGACCGGATGGGAAGAATATACCGTGATCAACAATCCAGAATCGCTTTTCAAGATCAATCACCCTGAACTTCCTCTATCCTACTACACTGGTATTCTAGGAATGCCAGGGCTTACCGCCTATGCTGGATTCTTTGACGTGCCCAAGCCAAAGAAAGGTGAATATGTCTTTATCTCAGGAGCATCTGGTGCTGTAGGTCAGGTTGTTGGGCAGCTTGCTAAGATCACAGGTTGCTACGTGATCGGCAGTGCTGGTTATGACGAAAAGGTCAACTTATTGAAGAGTAAGTTTGGCTTTGATGATGCTTTCAACTACAAGAAGGAACAAGATCTTGAGGCAGCCCTAAGGAGAT ATTTTCCAGAGGGTA TTGATATCTACTATGAGAATGTGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGTCGGATTGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACTACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTACCGGTTCGAGGAGGAGATGGCTGGGTACC TGAAGGAAGAAAAGG TGTCATACGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTTCACTGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTTGGCATGGGAGTTGGCATTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTTTCCAGTTTGGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAAAACAATGATATTGACGGGAGTACTTCCCCAAAATGACTT                                                                                                ]
[+] EMBL BI802491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aCCCTAAGGAGATGTTTTTCCAGAGGGTATTTGACATCTACTATGAGAATGTGGGCGGAAAAATGCTAGACGCAGTGCTGCCTAACATGAGGCTGGGT GCCGGATTGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACTACATCGTTACGAAACGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTACCGGTTCGAGGAGGAGATGGCCGGGTACC TGAAGGAAGGAAAGG TGTCATACGTAGAGGATGTCGTCGAGGGGCTTGACGCAGCACCTGCAGCGCTCATCAGGCTCTTCACGGGCTGTAGTGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTCGGCATGGGAGTTAGCTTTACGTAGTAGTACTAGTTCAGAATTCAAAAATTGGGGGCTTTCCAATTTTGCCAATACCTAGCTAGTACATCTGTTTTTCTCAAGTCAGACAAGAGAAAAGAATGATATAGACGGGAGTACTTCCCAAAAAaaaaa                                                                                                 ]
[-] EMBL AW155590             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTATTACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTA CGGGTCCAAGAAGAGAAGGGTTGGTACCTTAAAGAAAAAAAAGGTTGTCATACGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTTCACTGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTTGGCATGGGAGTTGGCATTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTTTCCAGTTTGGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAAAACAATGATATTGACGGGAGTACTTCCCCAAAATGACTTTTTTTTATTTATTGCACCTGATTTATTGAAAGAGATCGTGCTCGCGATATCTTTTTTCACTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]


>consensus_11423#0 GGAGAGCGCGGCGGCGATCGATGGCGGCGGCCACAGTAAGCAACAAGAGGGTGATCCTAA AACGATACGTGACTAGGCTTCTCTCGGAGGATGATATGGAGGTGGTGACGGTGGAGGCGC CGCCGCTGGATGTGCCAACGGGGTCGAAGGGGGTGGTGGTGAAGAATCTGTATGTTTCGT GTGACCCTTACATGCGCAATCGGATGACCCACCACGAGTTGCCCAGCTACATCCCGGATT TTGTCCCAGGGGAGGTTTTGGAAAATTTTGGCGTGATGAAGGTGATATCATCTGGGCACC TGGATTTCAAGGCAGGTGATCTTGTTTGGGGGATGACCGGATGGGAAGAATATACCGTGA TCAACAATCCAGAATCGCTTTTCAAGATCAATCACCCTGAACTTCCTCTATCCTACTACA CTGGTATTCTAGGAATGCCAGGGCTTACCGCCTATGCTGGATTCTTTGACGTGCCCAAGC CAAAGAAAGGTGAATATGTCTTTATCTCAGGAGCATCTGGTGCTGTAGGTCAGGTTGTTG GGCAGCTTGCTAAGATCACAGGTTGCTACGTGATCGGCAGTGCTGGTTATGACGAAAAGG TCAACTTATTGAAGAGTAAGTTTGGCTTTGATGATGCTTTCAACTACAAGAAGGAACAAG ATCTTGAGGCAGCCCTAAGGAGATATTTTCCAGAGGGTATTGATATCTACTATGAGAATG TGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGTCGGATTGTGG CATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACT ACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGT ACTACCGGTTCGAGGAGGAGATGGCTGGGTACCTGAAGGAAGAAAAGGTGTCATACGTAG AAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTTCACTGGCC GTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTTGGCATG GGAGTTGGCATTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTTTCCAGTTT GGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAAAACAATGATAT TGACGGGAGTACTTCCCCAAAATGACTTTTTTTTATTTATTGCACCTGATTTATTGAAAG AGATCGTGCTCGCGATATCTTTTTTCACTCAAAAAAAAAAAAAAAAAACTCGAGACTAGT TCTC



consensusID : consensus_11423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1319
fasta sequence
                              [ATCCAAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGGGAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCTGAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGGCCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACACCGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTACTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTCTAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGATTGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGAAAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGAGCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGAGAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGATCGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTTGTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGACAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATACGTGGAGGACGTCGTTGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCACCGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACTGCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAATGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATAGATATGTTCAACGATTTGGGTGACTTATCCAGTATTGTGCTGTGTTAGAAAATTAAGTACAACGATTT]

[+] EMBL AK071631             [ATCCAAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGGGAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCTGAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGGCCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACACCGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTACTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTCTAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGATTGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGAAAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGAGCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGAGAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGATCGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTTGTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGACAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATACGTGGAGGACGTCGTTGAGGGGCTTGATGCGGCACCGGCAGCACTCATTAAGCTCTTCACCGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACTGCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAATGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATA                                                                    ]
[+] EMBL AK060453             [   CAAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGGGAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCTGAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGGGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGGCCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACACCGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTACTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTCTAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGATTGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGAAAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGAGCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGAGAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGATCGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTTGTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGACAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATACGTGGAGGACGTCGTTGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCACCGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACTGCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAATGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATAGATATGTTCAACGATTTGGGTGACTTATCCAGTATTGTGCTGTGTTAGAAAATTAAGTACAACGATTT]
[+] EMBL CF310759             [    AAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGGGAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCTGAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGGCCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACACCGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK104386             [     AGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGGGAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCTGAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGGCCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACACCGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTACTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTCTAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGATTGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGAAAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGAGCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGAGAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGATCGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTTGTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGACAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATACGTGGAGGACGTCGTTGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCACCGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACTGCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAATGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATAGAT                                                                 ]
[-] EMBL CF310760             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTATCGACATCTACTTTGAGAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGATCGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTTGTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGACAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATACGTGGAGGACGTCGTCGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCACCGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACTGCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAATGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATAGATATGTTCAACGAaaaaaaa                                               ]


>consensus_11423#1 ATCCAAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGG GAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCT GAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGT GCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGT CTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTC AGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGG CCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACAC CGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTA CTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTC TAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGAT TGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGA AAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGA GCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGA GAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGAT CGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTT GTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGA CAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATA CGTGGAGGACGTCGTTGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCAC CGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACT GCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGATTTCAGAAA TGGGGGCATCCCGTTTGTCTTGTGGGGTTCAGAAAATAGAAATAAAGAATAGATATGTTC AACGATTTGGGTGACTTATCCAGTATTGTGCTGTGTTAGAAAATTAAGTACAACGATTT



consensusID : consensus_11423#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence
                              [GACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTACGAGCTTTCAATGTCATAGAATTATCTTTTTTATAAATTAATAATATAAACTGATATACTCATAATAAGTCTGTGTGCACTTTTATGTGTTTATTATCAAGTTATGTCACCATTATTAGTGCACTTTTATGTGTTTATCATTAAGTTATGTCACCATTAATGGTCAAAAACTATTAATTTCTCCT]

[+] EMBL CF304874             [GACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTCAGACTTTATCCCGGGAGAGGTACGAGCTTTCAATGTCATAGAATTATCTTTTTTATAAATTAATAATATAAACTGATATACTCATAATAAGTCTGTGTGCACTTTTATGTGTTTATTATCAAGTTATGTCACCATTATTAGTGCACTTTTATGTGTTTATCATTAAGTTATGTCACCATTAATGGTCAAAAACTATTAATTTCTCCT]


>consensus_11423#2 GACGACGGAAGTGCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAA GAACCTGTATGTCTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCC TAGCTATGTCTCAGACTTTATCCCGGGAGAGGTACGAGCTTTCAATGTCATAGAATTATC TTTTTTATAAATTAATAATATAAACTGATATACTCATAATAAGTCTGTGTGCACTTTTAT GTGTTTATTATCAAGTTATGTCACCATTATTAGTGCACTTTTATGTGTTTATCATTAAGT TATGTCACCATTAATGGTCAAAAACTATTAATTTCTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11423#0      ---------------------------------------------------------GGA 3
consensus_11423#1      ATCCAAGTTGCTATAAAGGTTAGGCAGGCAGGCCCCCGCTCACCAGGAGAATTAGCTAGG 60
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      GAGCGCGGCG-----GCGATCGATGGCGGCGGCCACAGTAAGCAACAAGAGGGTGATCCT 58
consensus_11423#1      GAGCTAGGTGAGCACGAGAGCAGCAATGGCGGCGACGGCGAGCAACAAGAGGGTGATCCT 120
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      AAAACGATACGTGACTAGGCTTCTCTCGGAGGATGATATGGAGGTGGTGACGGTGGAGGC 118
consensus_11423#1      GAAGCGGTACGTGACGGGGCTCCTGTCGGAGGATGACATGGAGGTGGTGACGACGGAAGT 180
consensus_11423#2      ------------------------------------------------GACGACGGAAGT 12
                                                                       ****  *** * 

consensus_11423#0      GCCGCCGCTGGATGTG---CCAACGGGGTCGAAGGGGGTGGTGGTGAAGAATCTGTATGT 175
consensus_11423#1      GCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGT 240
consensus_11423#2      GCCACCGTTGGCCGTCGTCCCAGCAGGGTCGGAGGCGGTGGTGGTGAAGAACCTGTATGT 72
                       *** *** ***  **    *** * ****** *** *************** ********

consensus_11423#0      TTCGTGTGACCCTTACATGCGCAATCGGATGACCCACCACGAGTTGCCCAGCTACATCCC 235
consensus_11423#1      CTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTC 300
consensus_11423#2      CTCCTGCGATCCTTACATGCGCAACCGGATGACCCGTCATGAGGTGCCTAGCTATGTCTC 132
                        ** ** ** ************** **********  ** *** **** *****  ** *

consensus_11423#0      GGATTTTGTCCCAGGGGAGGTTTTGGAAAATTTTGGCGTGATGAAGGTGATATCATCTGG 295
consensus_11423#1      AGACTTTATCCCGGGAGAGGTTTTGGCAAATTTTGGCGTGATGAGGGTGATATCATCCGG 360
consensus_11423#2      AGACTTTATCCCGGGAGAGGTACGAGC---TTTCAATGTCAT-AGAATTATCTTTTTTAT 188
                        ** *** **** ** *****    *    ***    ** ** *   * ** *  *    

consensus_11423#0      GCACCTGGATTTCAAGGCAGGTGATCTTGTTTGGGGGATGACCGGATGGGAAGAATATAC 355
consensus_11423#1      CCACCCAGATTTCAAGGCAGGTGATCTTGTTTGGGGAATAACCGGATGGGAAGAATACAC 420
consensus_11423#2      AAATTAATAATATAAAC----TGATAT-ACTCATAATAAGTCTGTGTGC-ACTTTTATGT 242
                         *     * *  **      **** *   *      *   * *  **  *    **   

consensus_11423#0      CGTGATCAACAATCCAGAATCGCTTTTCAAGATCAATCACCCTGAACTTCCTCTATCCTA 415
consensus_11423#1      CGTGATTAACAATCCGGAATCACTTTTCAGGATCAATCACCCTAAACTTCCTCTGTCCTA 480
consensus_11423#2      GTTTATTATCAAGTTATGTCACCATTATTAGTGCACTTTTATGTGTTTATCATTAAGTTA 302
                         * ** * ***          * **    *  ** *          *  *  *    **

consensus_11423#0      CTACACTGGTATTCTAGGAATGCCAGGGCTTACCGCCTATGCTGGATTCTTTGACGTGCC 475
consensus_11423#1      CTACACTGGTATTTTAGGAATGCCAGGGCTTACAGCCTATGCTGGATTCTTTGAAGTGTC 540
consensus_11423#2      TGTCACCATTAATGGTCAAAAACTATTAATTTCTCCT----------------------- 339
                          ***   ** *     **  * *    ** *  *                        

consensus_11423#0      CAAGCCAAAGAAAGGTGAATATGTCTTTATCTCAGGAGCATCTGGTGCTGTAGGTCAGGT 535
consensus_11423#1      TAAGCCGAAGAAAGGTGAATATGTCTTTATTTCAGCAGCATCTGGTGCCGTAGGTCAGAT 600
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      TGTTGGGCAGCTTGCTAAGATCACAGGTTGCTACGTGATCGGCAGTGCTGGTTATGACGA 595
consensus_11423#1      TGTTGGGCAGCTTGCTAAGATCATAGGCTGCTATGTGGTTGGCAGTGCTGGTTCTGACGA 660
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      AAAGGTCAACTTATTGAAGAGTAAGTTTGGCTTTGATGATGCTTTCAACTACAAGAAGGA 655
consensus_11423#1      AAAGGTCAGCTTATTGAAGACCAAGTTTGGCTTTAATGACGCTTTCAACTATAAGAAGGA 720
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      ACAAGATCTTGAGGCAGCCCTAAGGAGATATTTTCCAGAGGGTATTGATATCTACTATGA 715
consensus_11423#1      GCCAGACCTCGAGGCAGCCCTAAGGAGGTATTTTCCAGAGGGTATCGACATCTACTTTGA 780
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      GAATGTGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGTCGGAT 775
consensus_11423#1      GAATGTGGGCGGTGAGACGCTAGATGCAGTGCTACCTAACATGCGCCTAGGTGGTCGGAT 840
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      TGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCT 835
consensus_11423#1      CGCGGCATGTGGGATGATCTCGCAGTACAACCTAGAGCGGCCAGAGGGGGTGAAAAACTT 900
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      GTACTACATCGTTACCAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGA 895
consensus_11423#1      GTTCTATATCGTCACCAAGCGTCTGCGTATGGAGGGGTTCCTTGTGTTTGACTTCTATGA 960
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      CAGGTACTACCGGTTCGAGGAGGAGATGGCTGGGTACCTGAAGGAAGAAAAGGTGTCATA 955
consensus_11423#1      CAGGTACTACCAGTTCGAGGATGAAATGGCTAGGTACCTAAAGGAAGGGAAGGTGGCATA 1020
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      CGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTCTTCAC 1015
consensus_11423#1      CGTGGAGGACGTCGTTGAGGGGCTCGATGCGGCACCGGCAGCACTCATTAAGCTCTTCAC 1080
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      TGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACA-----ACGCT 1070
consensus_11423#1      CGGCCGCAATGTCGGAAAACAGCTCGTCGCCATCGCACGAGAGTGATACGGTGCCACACT 1140
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      GCTTGGCATGGGAGTTGGCATTACGTAATAGTACTAGTTCAGA-ATTCAGAAATTGGGGG 1129
consensus_11423#1      GCTCGGCACGCAAATTAGCATTACCGAGGAGTACTACTGTAGTTGTTCAGA--------- 1191
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      CTTTCCAGTTTGGCCAATACCTAGTTAGTACATCTGCTTTTCTCAAGTCAGACAGGAGAA 1189
consensus_11423#1      --TTTCAGAAATGGGGGCATCCCGTTTGT-CTTGTGGGGTTCAGAAAATAGAAATAAAGA 1248
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      AACAATGATATTGACG----GGAGTACTTCCCCAAAATGACTTTTTTTTATTTATTGCAC 1245
consensus_11423#1      ATAGATATGTTCAACGATTTGGGTGACTTATCCAGTATTGTGCTGTGTTAGAAAATTAAG 1308
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      CTGATTTATTGAAAGAGATCGTGCTCGCGATATCTTTTTTCACTCAAAAAAAAAAAAAAA 1305
consensus_11423#1      TACAACGATTT------------------------------------------------- 1319
consensus_11423#2      ------------------------------------------------------------
                                                                                   

consensus_11423#0      AAACTCGAGACTAGTTCTC 1324
consensus_11423#1      -------------------
consensus_11423#2      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)