These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 739 fasta sequence [CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT-GTTGTGTTTTCAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATC] [+] EMBL CF282096 [CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGA ] [+] EMBL CF330591 [ CCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATTCTGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACTCTGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAGGACGACGTTCATGGTTGTGTTTTCAAAAAAAAAAAAAAAAAA ] [-] EMBL CF282097 [ GCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTNTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAAAAAGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT GTTGTGTTTTCATGTAAAA ] [-] EMBL CF330590 [ ATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT GTTGTGTTTTCAAAAAA ] [-] EMBL CF281869 [ AACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT G TGTGTTTTCAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATC] consensusID : consensus_11426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [GACCCGCCTCAGTTTAGTTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAGTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTTCTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGTTTGTGTTATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCATTTGTGGTAAAAAAAAAAAAAAAAA] [+] EMBL C98270 [GACCCGCCTCAGTTTAGTTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAGTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTTCTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGTTTGTGTTATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCATTTGTGGTAAAAAAAAAAAAAAAAA] [-] EMBL AF521989 [ GGCATCCTACTTTGTGTGTAACATTTACCCTTTGAGACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGATGTTCACAAACGGACATATAGTATGTC ] consensusID : consensus_11426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CATCACGGACACCAGCGGCGATCCATCGGCGATCCACCGCGCGCGCTTCGATCGGCGACCGCCTCAGTTAGTTAGTTAAGTTTCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCATTCAAGGATCATCCGTATGACCAGGACAGGTTCTGTTCTTTTTGGGTGAAGAACTGTTTTTTGTGATNGGTGGATAGATAGGGGTAAAATGTTTGTGTATGAAATGGGGATCNTNTTTGTGGTAAATTACCTTTGAATGTAATTATGCTNTATTGAATCATTTTGGGGATATGGGGNGNGGAGTGNTAAAATAAGAAGTGNTANGGGTCTTGGATGTTGGG] [+] EMBL OS1365A [CATCACGGACACCAGCGGCGATCCATCGGCGATCCACCGCGCGCGCTTCGATCGGCGACCGCCTCAGTTAGTTAGTTAAGTTTCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCATTCAAGGATCATCCGTATGACCAGGACAGGTTCTGTTCTTTTTGGGTGAAGAACTGTTTTTTGTGATNGGTGGATAGATAGGGGTAAAATGTTTGTGTATGAAATGGGGATCNTNTTTGTGGTAAATTACCTTTGAATGTAATTATGCTNTATTGAATCATTTTGGGGATATGGGGNGNGGAGTGNTAAAATAAGAAGTGNTANGGGTCTTGGATGTTGGG] consensusID : consensus_11426#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTG] [+] EMBL CF281868 [CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11426#0 CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCC 60 consensus_11426#3 -----------------------CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCC 37 consensus_11426#1 ------------------------------------------------------------ consensus_11426#2 -----------------------------------------CATCACGGACACCAGCGGC 19 consensus_11426#0 GCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCA 120 consensus_11426#3 GCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCA 97 consensus_11426#1 -------------------------------------------GACCCG-CCTCAGTTTA 16 consensus_11426#2 GATCCATCGGC-------GATCCACCGCGCGCGCTTCGATCGGCGACCG-CCTCAGTT-A 70 *** *** * * consensus_11426#0 CCTTGGTCGAGGTCG--CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGC 177 consensus_11426#3 CCTTGGTCGAGGTCG--CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGC 154 consensus_11426#1 G-TTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAG-TCCGCTC 74 consensus_11426#2 G-TTAGTTAAGTTT---CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTC 125 ** ** * * ******* ****** ******************** ** ** * consensus_11426#0 TCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCA 237 consensus_11426#3 TCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCA 214 consensus_11426#1 TCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCA 134 consensus_11426#2 TCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCA 185 ***************************** * *********************** **** consensus_11426#0 ATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAAC 297 consensus_11426#3 ATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAAC 274 consensus_11426#1 ATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAAC 194 consensus_11426#2 ATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAAC 245 ***** ********************** ********************* ********* consensus_11426#0 AAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCA 357 consensus_11426#3 AAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCA 334 consensus_11426#1 AAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCA 254 consensus_11426#2 AAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCA 305 **** ******** ******** ***************************** ******* consensus_11426#0 GTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTG 417 consensus_11426#3 GTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTG 394 consensus_11426#1 GCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTG 314 consensus_11426#2 GCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTG 365 * *********** ******** ** ** ** ***************** ** ******* consensus_11426#0 CTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTT 477 consensus_11426#3 CTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTT 454 consensus_11426#1 CTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTT 374 consensus_11426#2 CTATATTGGAGATCC-ATTCAAGGATCATCCGTATGACC-AGGACA-GGTTCTGTTCTTT 422 ************* * ** *********** ******* ** *** * ****** **** consensus_11426#0 CTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGG 537 consensus_11426#3 CTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGG 514 consensus_11426#1 CTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGT 434 consensus_11426#2 TT-GGGTGAAGAAC-TGTTTTTTGT--GATNGGTGGA--TAGATAGG-GGTAAAA--TGT 473 * * ****** ** * **** * ** **** ******* * * * * ** consensus_11426#0 -TTATGTCCATGCAACATGGGAGAGCTACTCGGAG-----CATTTACCCTTTGAAATTGT 591 consensus_11426#3 GTTATGTCCATGCAACATGGGAGAGCTACTCGGAG-----CATTTACCCTTTGAAATTG- 568 consensus_11426#1 -TTGTGTT-ATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGC 492 consensus_11426#2 -TTGTGT----ATGAAATGGGGATCNTN-TTTGTG-GTAA-ATT--ACCTTTGAA----- 518 ** *** * ***** * * * * *** ******** consensus_11426#0 TATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACC 651 consensus_11426#3 ------------------------------------------------------------ consensus_11426#1 TCAATTTATGCCTATTATTGTAAACTCCATTTTTGT--GTGAATAATGAGAGGGACGATC 550 consensus_11426#2 TGTAATTATGCT--NTATTGAA----TCATTTTGG---GGATATGGGGNGNGGAGTGNTA 569 consensus_11426#0 AGTTGAATTACAGCAAAAATAAAGACGACGTTCATGTTGTGTTTTCAAAAAAAAAAAAAA 711 consensus_11426#3 ------------------------------------------------------------ consensus_11426#1 GGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTAT 610 consensus_11426#2 AAATAA--GAAGTGNTANGGGTCTTGGATGTTGGG------------------------- 602 consensus_11426#0 AAAATGTCATGCCGTTACGTAGCGTATC-------------------------------- 739 consensus_11426#3 ------------------------------------------------------------ consensus_11426#1 GACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCAT 670 consensus_11426#2 ------------------------------------------------------------ consensus_11426#0 ------------------------ consensus_11426#3 ------------------------ consensus_11426#1 TTGTGGTAAAAAAAAAAAAAAAAA 694 consensus_11426#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||