These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 979 fasta sequence [GTTTAACAATCACTGTGGACTCCGAAAGCCTCCTGGCGACGATGGCGTCGTCGTCACGGCCGGAGG-AGG-CGGCGGCGGCGGCGCCGCCGTGGAGCAGGCTGGAGGGGCGGGTGGTGCTGGTGACGGGCGCCTCCTCGGGGCTCGGCCGCGAGTTCTGCCTCGACCTGGCGCGCGCCGGCTGCCTGGTCGTCGCCGCCGCGCGCCGCGCCGACCGCCTCCGCTCGCTCTGCGACGAGATCAACGCCTCCGCCCCCCGGGCTTCGGCGGCGGCGGCCGCCGTCGAGCTCGACGTCGCCTCCGGTGGGCCCGCCTTGGAGGCCGCCGTGCAGAGCGCCTGGGACGCCTTCGGCCGCATCGACGTCCTCATCAACAACGCTGGCCTTCGAGGAGGTGTGCACTCACCATTGGATTGGCCTGAGGATGAATGGGAGACACTTATCAAGACAAACCTCACAGGATCATGGCTCGTCGCCAAGCATGTATGTAGACGCATGCGTGATGCCAAGCTAAAGGGTTCAGTAATTAACATTTCCTCTGTTTCTGGTCTTAACCGTGGTCATCTGCCTGGCTCCACTGGATACGCAGCTTCCAAGTCTGCCATGCATTATGCCACAAAGCTAATGGCTTTGGAATTAGGAGCATATGGCATTAGAGTGAACTCAATAGCACCTGGAATCTTCAAGTCAGAGATAACCGCTCCTCTATTGCAAAAGAAATGGTTGAGCACTGTTGTTTCAAAGATAGTGCCACTTAAGACTCATGGCACTACTGATCCAGCATTGACGTCGCTGGTTCGTTTTCTGATCCATGAAACATCATCATATGTGACTGGCAACATCTTCATTGTAGATTCTGGTGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATATTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAATAAAAATCGAAACTCCAGGGAGGTG] [+] EMBL AK069393 [GTTTAACAATCACTGTGGACTCCGAAAGCCTCCTGGCGACGATGGCGTCGTCGTCACGGCCGGAGG AGG CGGCGGCGGCGGCGCCGCCGTGGAGCAGGCTGGAGGGGCGGGTGGTGCTGGTGACGGGCGCCTCCTCGGGGCTCGGCCGCGAGTTCTGCCTCGACCTGGCGCGCGCCGGCTGCCTGGTCGTCGCCGCCGCGCGCCGCGCCGACCGCCTCCGCTCGCTCTGCGACGAGATCAACGCCTCCGCCCCCCGGGCTTCGGCGGCGGCGGCCGCCGTCGAGCTCGACGTCGCCTCCGGTGGGCCCGCCTTGGAGGCCGCCGTGCAGAGCGCCTGGGACGCCTTCGGCCGCATCGACGTCCTCATCAACAACGCTGGCCTTCGAGGAGGTGTGCACTCACCATTGGATTGGCCTGAGGATGAATGGGAGACACTTATCAAGACAAACCTCACAGGATCATGGCTCGTCGCCAAGCATGTATGTAGACGCATGCGTGATGCCAAGCTAAAGGGTTCAGTAATTAACATTTCCTCTGTTTCTGGTCTTAACCGTGGTCATCTGCCTGGCTCCACTGGATACGCAGCTTCCAAGTCTGCCATGCATTATGCCACAAAGCTAATGGCTTTGGAATTAGGAGCATATGGCATTAGAGTGAACTCAATAGCACCTGGAATCTTCAAGTCAGAGATAACCGCTCCTCTATTGCAAAAGAAATGGTTGAGCACTGTTGTTTCAAAGATAGTGCCACTTAAGACTCATGGCACTACTGATCCAGCATTGACGTCGCTGGTTCGTTTTCTGATCCATGAAACATCATCATATGTGACTGGCAACATCTTCATTGTAGATTCTGGTGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATATTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAATAAAAATCGAAACTCCAGGGAGGTG] [+] EMBL CB667519 [ GGACTCCTAAAGCCTCCTGGCGACGATGGCGTCGTCGTCACGGCCGGAGG AGG CGGCGGCGGCGGCGCCGCCGTGGAGCAGGCTGGAGGGGCGGGTGGTGCTGGTGACGGGCGCCTCCTCGGGGCTCGGCCGCGAGTTCTGCCTCGACCTGGCGCGCGCCGGCTGCCTGGTCGTCTCCGCCGCGCGCCGCGCCAACCGCCTCCGCTCGCTCTGCTACTATATCATCGCCTCCGCCCCCTCGGCTTCTGCGGCAGTCGCCGCCCTCttg ] [+] EMBL AU070949 [ TCCGAAAGCCTCCTGGCGACGATGGNGTCGTCGTCACGGCCGGAGGAAGGTCGGC GCGGCGGCGCCGCNGTGGAGCAGGCTGGAGGGGCGGGTGGTGCTGGTGACGGGCGCCTCCTCGGGGCTCGGCCGCGAGTTCTGCCTCGACCTGGCGCGCGCCGGCTGCCTGGTCGTCGCCGCCG GCGCCGCGCNGACCGCCTCCGCTCGCTCTGCGACGAGATCAACGCCTCCGCCCCCCGGGCTTncgc ] [-] EMBL CB667520 [ TCCGCCCCCCGGGCTTCGGCGGCGGCGGCCGCCGTCGAGCTCGACGTCGCCTCCGGTGGGCCCGCCTTGGAGGCCGCCGTGCAGAGCGCCTGGGACGCCTTCGGCCGCATCGACGTCCTCATCAACAACGCTGGCCTTCGAGGAGGTGTGCACTCACCATTGGATTGGCCTGAGGATGAATGGGAGACACTTATCAAGACAAACCTCACAGGATCATGGCTCGTCGCCAAGCATGTATGTAGACGCATGCGTGATGCCAAGCTAAAGGGTTCAGTAATTAACATTTCCTCTGTTTCTGGTCTTAACCGTGGTCATCTGCCTGGCTCCACTGGATACGCAGCTTCCAAGTCTGCCATGCATTATGCCACAAAGCTAATGGCTTTGGAATTAGGAGCATATGGCATTAGAGTGAACTCAATAGCACCTGGAATCTTCAAGTCAGAGATAACCGCTCCTCTATTGCAAAAGAAATGGTTGAGCACTGTTGTTTCAAAGATAGTGCCACTTAAGACTCATGGCACTACTGATCCAGCATTGACGTCGCTGGTTCGTTTTCTGATCCATGAAACATCATCATATGTGACTGGCAACATCTTCATTGTAGATTCTGGTGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATATTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAA ] consensusID : consensus_11429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGGGCAAAGCAAACCAATTAATAAACAAAAACAATAATCCATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCACGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATATTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAATAAAAATCGAAACTCCAGGGAGGTGGAATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF299137 [AGGGCAAAGCAAACCAATTAATAAACAAAAACAATAATCCATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCACGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATATTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAATAAAAATCGAAACTCCAGGGAGGTGGAATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11429#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 347 fasta sequence [TAAACAAAAACACT-T--TACATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCACGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCTCCTCCCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGCCTCCGCCTCGCTCGCCCACCCGCGCCTCCTCTCCGGCCTCCGCCTCGCCGCGGCGCGCCCGCGCCCGCGCCACGGCCGCCGCGCCATGTCCGTCACCGTCCGGAGCTCCCTCATCGACCCGGACGGGGGCGCGCTCGTCGACCTCGTGGCGGCGCCGGAGCGCCGCGCGGCGCTGCG] [+] EMBL AU166392 [TAAACAAAAACAATAA TACATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCCCGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCT T CCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGCCTCCGCCTCGCTCGCCCACCCGCGCCTCCTCTCCGGCCTCCGCCTCTCCGCGCCGCGCCCGCGCCCGCGCCACGGCCGCCGCGCCATGTCCGTCACCGTCCGGAGCTCCCTCATCGACCCGGACGGGGGCGCGCTCGTCGACCTCGTGGCGGCGCCGGGGCGCCGCGCGGCGCTGCG] [+] EMBL CB622516 [ ACAAAAACACT T TAAATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCACGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCTCCTCCCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGCCTCCGCCTCGCTCGCCCACCCGCGCCTCCTCTCCGGCCTCCGCCTCGCCGCGGCGCGCCCGCGCCCGCGCCACGGCCGCCGCGCCATGTCCGTCACCGTCCGGAGCTCCCTCATCGACCCGGACGGGGGCGCGCTCGTCGACCTCGTGGCGGCGCCGGAGCGCCGCGCGGCGCTGC ] [+] EMBL CB617950 [ ACAAAAAC CT TAATCCATACTCCGCGCGCCCACGCCACGCCACGCCATTCGTCACGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCTCCTCCCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGCCTCCGCCTCGCTCGCCCACCCGCGCCTCCTCTCCGGCCTCCGCCTCGCCGCGGCGCGCCCGCGCCCGCGCCACGGCCGCCGCGCCATGTCCGTCACCGTCCGGAGCTCCCTCATCGACCCGGACGGGGGCGCGCTCGTCGACCTCGTGGCGGCGCCGGAGCGCCGCGC ] consensusID : consensus_11429#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [TACTCCGCGCGCCCACGCCACGNCACGCCATTCGTCCCGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCTTCCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGGCTCCGAGCCCGCTGCGGGGGTTCATGCGGGAGACGAGTACCTCCAGTCGCTGCACTTCAACTGCATCCGNCTCCCCGACGGCGCGGGCGTCGTCAACATGTCGCTCCCCATCGTCCTCGNCATCGGGACCGGGAGAAGGAGGAGATCGGGTCCAGNCC] [+] EMBL OSS14939A [TACTCCGCGCGCCCACGCCACGNCACGCCATTCGTCCCGTCGGTCGAACACCTTGCGCGCGCCCACCCATGGCCACCACCACCCACCTCCACCTTCCCAACCCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGGCTCCGAGCCCGCTGCGGGGGTTCATGCGGGAGACGAGTACCTCCAGTCGCTGCACTTCAACTGCATCCGNCTCCCCGACGGCGCGGGCGTCGTCAACATGTCGCTCCCCATCGTCCTCGNCATCGGGACCGGGAGAAGGAGGAGATCGGGTCCAGNCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 GTTTAACAATCACTGTGGACTCCGAAAGCCTCCTGGCGACGATGGCGTCGTCGTCACGGC 60 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 CGGAGGAGGCGGCGGCGGCGGCGCCGCCGTGGAGCAGGCTGGAGGGGCGGGTGGTGCTGG 120 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 TGACGGGCGCCTCCTCGGGGCTCGGCCGCGAGTTCTGCCTCGACCTGGCGCGCGCCGGCT 180 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 GCCTGGTCGTCGCCGCCGCGCGCCGCGCCGACCGCCTCCGCTCGCTCTGCGACGAGATCA 240 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 ACGCCTCCGCCCCCCGGGCTTCGGCGGCGGCGGCCGCCGTCGAGCTCGACGTCGCCTCCG 300 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 GTGGGCCCGCCTTGGAGGCCGCCGTGCAGAGCGCCTGGGACGCCTTCGGCCGCATCGACG 360 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ----------------------------------------------TAAACAAAAACACT 14 consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 TCCTCATCAACAACGCTGGCCTTCGAGGAGGTGTGCACTCACCATTGGATTGGCCTGAGG 420 consensus_11429#1 ------------------------AGGGCAAAGCAAACCAATTAATAAACAAAAACAATA 36 consensus_11429#2 TTACATACTCCGCGCGC-CCACGCCACGCCACGCCA---TTCGTCACGTCGGTCGAACAC 70 consensus_11429#3 -----TACTCCGCGCGC-CCACGCCACGNCACGCCA---TTCGTCCCGTCGGTCGAACAC 51 consensus_11429#0 ATGAATGGGAGACACTTATCAAGACAAACCTCACAGGATCATGGCTCGTCG-CCAAGCAT 479 consensus_11429#1 ATCCATACTCCGCGCGC-CCACGCCACGCCACGCCA---TTCGTCACGTCGGTCGAACAC 92 * * * ** * ** * * * * * ***** * * ** consensus_11429#2 CT-TGCGCGCGCCCACCCATGGCCACCACCA----CCCACC--TCCACCTCCTCCCCAAC 123 consensus_11429#3 CT-TGCGCGCGCCCACCCATGGCCACCACCA----CCCACC--TCCACCTTC---CCAAC 101 consensus_11429#0 GTATGTAGACGCATGCGTGATGCCAAGCTAAAGGGTTCAGTAATTAACATTTCCTCTGTT 539 consensus_11429#1 CT-TGCGCGCGCCCACCCATGGCCACCTTA-----CCTGGTGTTCCAATATTCTCTTCTC 146 * ** *** * **** * * consensus_11429#2 CCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGCCTCCGC-CTCGCT 182 consensus_11429#3 CCCATCCCTCCCCGCCTCCACGCCTCCCCGCCCGCGCGCCTCCGCGGCTCCGAGCCCGCT 161 consensus_11429#0 TCTGGTCTTAACCGTGGTCATCTGCCTGGCTCCACTGGATACGCAGCTTCCAAGTCTGCC 599 consensus_11429#1 TGTAATATTCATCATTAGAATTTGCTT---TCAAAAAGTCATCGGATCTATTGATTTGGC 203 * * * * * * * consensus_11429#2 -CGCCCACCCGCGCCTCCTCTCCGGCCTCCGCCTCGCCGCGGCGCGCCCGCGCCCGCGCC 241 consensus_11429#3 GCGGGGGTTCATGCGGGAGACGAGTACCTCCAGTCGCTGCACTTCAACTGCATCCGNCTC 221 consensus_11429#0 ATGCATTATGCCACAAAGCTA-ATGGCTTTGGAATTAGGAGCATATGGCATTAGAGTGAA 658 consensus_11429#1 ATCAAATAAAAATCGAAACTCCAGGGAGGTGGAATTTCTAAAAAAAAAAAAAAAAAAAAA 263 * consensus_11429#2 ACGGCCGCCGCGCCATGTCCGTCACCGTCCGGAGCTCCCTCATCGACCCGGACGGGGGCG 301 consensus_11429#3 CCCGACGGCGCGG-GCGTC-GTCAACATGTCGCTCCCCATCGTCCTCGNCATCGGGACCG 279 consensus_11429#0 CTCAATAGCACCTGGAATCTTCAAGTCAGAGATAACCGCTCCTCTATTGCAAAAGAAATG 718 consensus_11429#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 323 * consensus_11429#2 CGCTC--GTCGACCTCGTGGCGGCGCCGGAGCGCCGCGCGGCGCTGCG------------ 347 consensus_11429#3 GGAGAAGGAGGAGATCGGGTCCAGNCC--------------------------------- 306 consensus_11429#0 GTTGAGCACTGTTGTTTCAAAGATAGTGCCACTTAAGACTCATGGCACTACTGATCCAGC 778 consensus_11429#1 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 368 consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 ATTGACGTCGCTGGTTCGTTTTCTGATCCATGAAACATCATCATATGTGACTGGCAACAT 838 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 CTTCATTGTAGATTCTGGTGCCACCTTACCTGGTGTTCCAATATTCTCTTCTCTGTAATA 898 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 ------------------------------------------------------------ consensus_11429#3 ------------------------------------------------------------ consensus_11429#0 TTCATCATTAGAATTTGCTTTCAAAAAGTCATCGGATCTATTGATTTGGCATCAAATAAA 958 consensus_11429#1 ------------------------------------------------------------ consensus_11429#2 --------------------- consensus_11429#3 --------------------- consensus_11429#0 AATCGAAACTCCAGGGAGGTG 979 consensus_11429#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||