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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 770 fasta sequence
[TGGACTGAAGGAGTAGAAAAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAAGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGT-AAAA-AAAAATGGTGTGCGAGGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTATTCAGGAGCCCCAAAAACCGGTCAATGCAGGGGCTGTTCAAAGTATTCTTGTTTATTCCTCCGAGTGCAATCCACTTTGAA]
[+] EMBL CF310269 [TGGACTGAAGGAGTAGAAAAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAAGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTG ]
[+] EMBL CF314226 [ CACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAGGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGT AAAA AAA ]
[+] EMBL AK058853 [ ACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAAGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGT AAAA AAAAATGGTGTGCGAGGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTATTCAGGAGCCCCAAAAACCGGTCAATGCAGGGGCTGTTCAAAGTATTCTTGTTTATTCCTCCGAGTGCAATCCACTTTGAA]
[+] EMBL CF314423 [ ACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGGGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAGGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGACGACAAGTACTACAAGTTCGATTCATCTTGACGTGTGTCTCGTCGGCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGACTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGCTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGAGT AAAACAAAAATGGTGTGCGAGGGGGC ]
[-] EMBL CF292239 [ GGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAAGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGTTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGTAAAAA AAAAATGGTGTGCGAGGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTATTCAGGAGCCCCAAAAACCGGTCAATGCAGGGGCTGTTCAAAGTATTCTTGTTTATTCCTCaaaa ]
[-] EMBL CF330972 [ CGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGACGCGCGGGAGACGTGCTACCTGGTGAAGGGGAAGGTGAGGGCGCACATCAAGGGCTCGTCGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGGCTAAGCTGCACCTGGGACGTCCTCGCCGCCGTCGACAAGTACTACAAGTTCGATCCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTGATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGT AAAA AAAAATGGTGTGCGAGGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTATTCAGGAGCCCCAAAAACCGGTCAATGCAGGGGCTGTTCAAAGTATTaaaaaaa ]
consensusID : consensus_11433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[CTGCGAGCTCGTCGGACAGTACAGCCTCGATCATGGGGACGACGTCGAGTCCGGACACCATGGCGGCGGCGGCCGGCCCCAGCCTGTCCATCACCGTCGAGAAGAACCCGCCGGAGGCGCGCTTGCTTCAGCTCGGCATCAAGTCGTGGCCCAAATGGGGGTGTCCGCCGGGGAAGTTCCCGCTCAAGTTCGACGCGAGGCTGACGTGCTACCTCCTCAAGGGCAGGGTGAGGGCCTCCGTGAAGGGCACCGGGAGGTGCGTCGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGCCTCAGCTGCACATGGGACGTCGTCGTCGGCATCGACAAGCACTACAACTTCGACTCCTAGTCAGTTAAACACCAAGCTAGACATGCATGCATCATTCATGCTTCGCTCGATCGTCTCTTCTTAATTAATTTGTAGCGTTACATCTTTGTTAATCATCTCCTC]
[+] EMBL AU197787 [CTGCGAGCTCGTCGGACAGTACAGCCTCGATCATGGGGACGACGTCGAGTCCGGACACCATGGCGGCGGCGGCCGGCCCCAGCCTGTCCATCACCGTCGAGAAGAACCCGCCGGAGGCGCGCTTGCTTCAGCTCGGCATCAAGTCGTGGCCCAAATGGGGGTGTCCGCCGGGGAAGTTCCCGCTCAAGTTCGACGCGAGGCTGACGTGCTACCTCCTCAAGGGCAGGGTGAGGGCCTCCGTGAAGGGCACCGGGAGGTGCGTCGAGTTCGGCGCCGGCGACCTCGTCGTCTTCCCCAAGGGCCTCAGCTGCACATGGGACGTCGTCGTCGGCATCGACAAGCACTACAACTTCGACTCCTAGTCAGTTAAACACCAAGCTAGACATGCATGCATCATTCATGCTTCGCTCGATCGTCTCTTCTTAATTAATTTGTAGCGTTACATCTTTGTTAATCATCTCCTC]
consensusID : consensus_11433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 454 fasta sequence
[TTTGATACAGGAAAGCCATCAGTCCAACTGCCCTCTCTTGGAGCCTTCCCCCCTCGCGAGAACTAGAAGTAGAAGAACTCATCATCTCACCTCCCAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGAGTCGCCACAGTGCCGATCGATCGCTGTCCATTTCCTGCTCCTTCATGGCGTACGTGTTTAATTGAGCGCGTGGGCGGGTGCGTNCGTACGAGGTGGGGTTGCCCGACGGGGAAGTTC]
[+] EMBL CF330973 [TTTGATACAGGAAAGCCATCAGTCCAACTGCCCTCTCTTGGAGCCTTCCCCCCTCGCGAGAACTAGAAGTAGAAGAACTCATCATCTCACCTCCCAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTC ]
[+] EMBL OSC19181 [ ccgACCCTCCTTAACTCATTCCTCCTACTCCTAACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGAGTCGCCACAGTGCCGATCGATCGCTGTCCATTTCCTGCTCCTTCATGGCGTACGTGTTTAATTGAGCGCGTGGGCGGGTGCGTNCGTACGAGGTGGGGTTGCCCGACGGGGAAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11433#0 TGGACTGAAGGAGTAGAAAAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCTA 60
consensus_11433#1 ------------------------------------------------------------
consensus_11433#2 ------------------------------------------------------------
consensus_11433#0 ACTGCAAGCTACTGCTCACCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGACCTCGCGCGC 120
consensus_11433#1 ----------------------------------CTGCGAGCTCGTCGGACAGTACAGCC 26
consensus_11433#2 -------------------------------------------TTTGATACAGGAAAGCC 17
** *
consensus_11433#0 --GAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTCCCGGCGGCG 178
consensus_11433#1 --TCGATCATGGGGACGACGTCGAGTCCGGACACCATGGCGGCGG-------CGGC--CG 75
consensus_11433#2 ATCAGTCCAACTGCCCTCTCTTGGAGCCTTCCCCCCTCGCGAGAACTAGAAGTAGA--AG 75
* ** * * ** * ** * * * *
consensus_11433#0 GCGGCACCCTCTC-CATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGCTCCAGCTA 237
consensus_11433#1 GCCCCAGCCTGTC-CATCACCGTCGAGAAGAACCCGCCGGAGGCGCGCTTGCTTCAGCTC 134
consensus_11433#2 AACTCATCATCTCACCTCCCAAACTGACACAACCCTCCTTAACTCATTCCTCCTACTCCT 135
** * * ** * ** * ***** ** * * *
consensus_11433#0 GGCGTCAAGTCCTGGCCCAAGTGGGGTTGCCCGACGGGGAAGTTCCCGGTGAAGTTCGAC 297
consensus_11433#1 GGCATCAAGTCGTGGCCCAAATGGGGGTGTCCGCCGGGGAAGTTCCCGCTCAAGTTCGAC 194
consensus_11433#2 AACTGCAAGCTACTGCTCA--------CCCTCTCCCGGTCTCCCTCCTCTCCTCCTCGAC 187
* **** ** ** * * ** ** * *****
consensus_11433#0 GCGCGGGAGACGTGCT-ACCTGGTGAAGGGGAAGGTGAGG-GCGCACATCAAGGGCTCGT 355
consensus_11433#1 GCGAGGCTGACGTGCT-ACCTCCTCAAGGGCAGGGTGAGG-GCCTCCGTGAAGGGCACCG 252
consensus_11433#2 CTCGCGC--GCGAGCTCATGGCCTCGAGCTCAAACCCGGACACCATGGACACGGACCCTC 245
* ** *** * * ** * * * * ** * *
consensus_11433#0 CGGAGTGCGTGGAGTTCGGCGCCGGCGACCTCGT-CGTCTTCCCCAAGGGGCTAAGCTGC 414
consensus_11433#1 GGAGGTGCGTCGAGTTCGGCGCCGGCGACCTCGT-CGTCTTCCCCAAGGGCCTCAGCTGC 311
consensus_11433#2 CCGGCGGCGGCGGCACCCTCTCCATCGCCGTGGAGCGCAACCCGCCGGAGTCGCGCCTGC 305
*** * * * ** ** * * * ** ** * * * * ****
consensus_11433#0 ACCTG--GGACGTC--CTCGCCGCCGTCGACAAGTACTACAAGTTCGATTCATCTTGACG 470
consensus_11433#1 ACATG--GGACGTC--GTCGTCGGCATCGACAAGCACTACAACTTCGACTCCTAGTCAGT 367
consensus_11433#2 TCCAGCTAGGCGTCAAGTCCTGGCCCAAGTGAGTCGCCACAGTGCCGATCGATCGCTGTC 365
* * * **** ** * * * * * *** *** *
consensus_11433#0 TCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCT 530
consensus_11433#1 TAAACACCAAGCTAGACATGCATGCATCATTCAT--GCTTCGCTCGATCGTCT-CTTCTT 424
consensus_11433#2 CATTTCCTGCTCCTTCATGGCGTACGTGTTTAAT--TGAGCGCGTGGGCGGGTGCGTNCG 423
* * * ** * *
consensus_11433#0 GATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAA 590
consensus_11433#1 AATTAATTTG-----------TAGCGTTACATCTTTGTTAATCATCTCCTC--------- 464
consensus_11433#2 TACGAGGTGGGG---------TTGCCCGACGGGGAAGTTC-------------------- 454
* * * * * ** * * *
consensus_11433#0 GCCCGTGCCTAATGTGATAATGTCTCTTCTTCTCTGCGTGTAAAAAAAAATGGTGTGCGA 650
consensus_11433#1 ------------------------------------------------------------
consensus_11433#2 ------------------------------------------------------------
consensus_11433#0 GGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTATTCAGGAGCCCCAAAAACCGG 710
consensus_11433#1 ------------------------------------------------------------
consensus_11433#2 ------------------------------------------------------------
consensus_11433#0 TCAATGCAGGGGCTGTTCAAAGTATTCTTGTTTATTCCTCCGAGTGCAATCCACTTTGAA 770
consensus_11433#1 ------------------------------------------------------------
consensus_11433#2 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||