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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1168 fasta sequence
[NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG-TACA--CCA-TGA--TT-AT-AAT-AAG-TGG-TC-AAACAT-TTAT-ATAT-AGT-CCATT-ATTCTTTATTC-ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGCGCCCGCCGGACAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAACATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGGAGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC]
[-] EMBL AU162838 [NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCA ]
[+] EMBL CB638491 [ TTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTTGTTGTGGAGCACCGCG ]
[+] EMBL CB675503 [ TAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAG ]
[-] EMBL OSS11679A [ aaggaccacCAAGTTACAACCCATTGAATTTAATAAATAAAG TGGNNCAAAACATNTTATAATATAAGTCCCATTAATTCTTTATTCAACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCG ]
[+] EMBL CB654910 [ AT AAGTTGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATACTACTTGTGCTTTAAATAATTTTTCATCCGTCAAAGGTACCCCTCGACTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCACTGAGGCACTCCACCACCGGGATGATGTGCTTGCGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGAACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCATCCACCTTGGCCAGCT ]
[-] EMBL CF326479 [ ACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGA ]
[-] EMBL CF324656 [ TCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATGAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCAAAGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGC ]
[-] EMBL CB675502 [ GCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACTGTAGTCCAAGCTCGGGTTGCGCCCGCCGGACAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAACATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGGAGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC]
consensusID : consensus_11440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TTCTTTATTCACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGGGTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCTCCACTCGTCTTGGAACACCCCCGGAACTGCTGCTCAAATCCNCCCCTTGGCACTTGTTNTCCCNTTGGCCACNCNTGGCCCTNAACCCCCCGGACTNCTNTTAAATTGGNACCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCCCAAANCNACAATNCTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAATTGCNGTTAGGCNGC]
[+] EMBL BE229087 [TTCTTTATTCACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGGGTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCTCCACTCGTCTTGGAACACCCCCGGAACTGCTGCTCAAATCCNCCCCTTGGCACTTGTTNTCCCNTTGGCCACNCNTGGCCCTNAACCCCCCGGACTNCTNTTAAATTGGNACCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCCCAAANCNACAATNCTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAATTGCNGTTAGGCNGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11440#0 NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAGT 60
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 ACACCATGATTATAATAAGTGGTCAAACATTTATATATAGTCCATTATTCTTTATTCACT 120
consensus_11440#1 -----------------------------------------------TTCTTTATTCACT 13
*************
consensus_11440#0 TACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTT 180
consensus_11440#1 TACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTT 73
************************************************************
consensus_11440#0 AAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTT 240
consensus_11440#1 AAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTT 133
************************************************************
consensus_11440#0 GAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTT 300
consensus_11440#1 GAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTT 193
************************************************************
consensus_11440#0 GATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCG 360
consensus_11440#1 GATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCG 253
************************************************************
consensus_11440#0 CGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGG 420
consensus_11440#1 CGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGG 313
******************************** **************** ********
consensus_11440#0 GTACGAGCGACACTGGGT-GATCCTGTTCGGGG--CCGTGCCGCTCTCCACAGCCGCGCG 477
consensus_11440#1 GTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCG 373
****** *********** ********* *** *************************
consensus_11440#0 TGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTT 537
consensus_11440#1 TGCGGC-TCCAC-TCGTCTTGGAACACC-CCCGGAACTGCTGCTCAAATCCNCC--CCTT 428
****** ***** ***** **** **** * **** ********* ** * * ****
consensus_11440#0 GGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTG 597
consensus_11440#1 GGC--ACTTGTTNTC-CCNTTGGCCA-CNCNTGGCCCTNAA---CCCCCCGGA-CTNCTN 480
*** ** *** ** ** ******* * * *** ** * ** * **** ** **
consensus_11440#0 TATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTC 657
consensus_11440#1 TTAAATTGGNA---CCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCC 537
* * *** * *** * * * * ** * * * ** *
consensus_11440#0 GATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGC 717
consensus_11440#1 CAAANCNACAATN--CTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAAT 595
* * * * * * ** *** * *** * * * *
consensus_11440#0 GACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTC 777
consensus_11440#1 TGCNGTTAGGCNGC---------------------------------------------- 609
* ** **
consensus_11440#0 GACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGC 837
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 CTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTC 897
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 CGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGA 957
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 CGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGCGCCCGCCGGA 1017
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 CAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAA 1077
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 CATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGG 1137
consensus_11440#1 ------------------------------------------------------------
consensus_11440#0 AGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC 1168
consensus_11440#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||