These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 940 fasta sequence [AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT-GGAAATTTGATTACC-GGGATGGGGCTTGGGAC-GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT-GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG-AGACATTTAG-TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG-AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG-CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG-CCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATA-GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU183212 [AACAGNGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGATAGGAAATTTGATTACCAGGGATGGGGCTTGGGACAGGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG ] [+] EMBL C74767 [ ACAGTCCCAGCTCACCCNNNCNTAGTCAATCACCTCACGTGNNAAGTTATNGANCGATCAAAGGTTGTNATTGAT GGNNATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTAGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTGAAGACATTTA ] [+] EMBL C74766 [ CAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGG GTNGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACNAAGGTCACCGGTGCTCTTCG CTTGCTG TTTATGGG CTTC ACTC TCTTGAG C AC ACATA TCC CTG TGCG CA TGG CA CTGG CGG AATCA TCC CTATA TTG TGGGA GG CCATTA ] [+] EMBL AU065630 [ AGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAGTTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAAGAC AAGGTCACCGGTGCTCTTCGTCTTACTG TTTATGGGNCCTACAACT ] [+] EMBL CA765780 [ ATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGCG AGACATTTAG TTGTGCTTCAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGGACCATTTACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATAGGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGT ] [+] EMBL AU030159 [ TTCAGATNTTTTTTCAGCAATTTTGTTNCCTGAATTCTGAAGTTAACTGGCAATNTAGTACAATGGATTCCCTCAATTTGCTCGATA GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB965594 [ TGGCAATGTAGTACCATGGATTCCCTCCATTTGCTCGATA GTTGATCAGATAATTTGCTCGAT ] consensusID : consensus_11443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 135 fasta sequence [CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA] [+] EMBL CF301155 [CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAA ] [-] EMBL CF301154 [ GATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11443#0 AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATC 60 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 AAAGGTTGTGATTGATGGAAATTTGATTACCGGGATGGGGCTTGGGACGGTCATTGATTT 120 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 TTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTGGCAAATGG 180 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 CATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATA 240 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 CGCAGACGTGAGACATTTAGTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAGACAA 300 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 AGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGGCCTTCAACTCTTCTTGAGACAACA 360 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 ACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTG 420 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 GGATGGCCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTT 480 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 GGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGA 540 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 TGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCT 600 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 TCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTA 660 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 GAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAAT 720 consensus_11443#1 ------------------------------------------------------------ consensus_11443#0 TTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGC 780 consensus_11443#1 ---------------------------------CTGGACTGAAGGAGTAGAAAAATTTGT 27 * * * *** * ****** consensus_11443#0 TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATG 840 consensus_11443#1 TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATG 87 ********************************************** ***** ******* consensus_11443#0 CTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAA 900 consensus_11443#1 CTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA------------ 135 ********* ********************** *************** consensus_11443#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 940 consensus_11443#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||