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Oryza sativa
cluster # 11443 cluster # 11443       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11443#0 length = 940 sequences # 7  
consensus_11443#1 length = 135 sequences # 2  

consensusID : consensus_11443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 940
fasta sequence
                              [AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT-GGAAATTTGATTACC-GGGATGGGGCTTGGGAC-GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT-GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG-AGACATTTAG-TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG-AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG-CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG-CCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATA-GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU183212             [AACAGNGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGATAGGAAATTTGATTACCAGGGATGGGGCTTGGGACAGGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C74767               [ ACAGTCCCAGCTCACCCNNNCNTAGTCAATCACCTCACGTGNNAAGTTATNGANCGATCAAAGGTTGTNATTGAT GGNNATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTAGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTGAAGACATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C74766               [  CAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGG GTNGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACNAAGGTCACCGGTGCTCTTCG CTTGCTG TTTATGGG  CTTC ACTC TCTTGAG C AC ACATA TCC CTG TGCG CA TGG CA CTGG CGG AATCA TCC CTATA TTG TGGGA GG CCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU065630             [                        AGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAGTTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAAGAC AAGGTCACCGGTGCTCTTCGTCTTACTG TTTATGGGNCCTACAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA765780             [                                                                                                                                                                                    ATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGCG AGACATTTAG TTGTGCTTCAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGGACCATTTACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATAGGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGT                                                                                                                ]
[+] EMBL AU030159             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCAGATNTTTTTTCAGCAATTTTGTTNCCTGAATTCTGAAGTTAACTGGCAATNTAGTACAATGGATTCCCTCAATTTGCTCGATA GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB965594             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGCAATGTAGTACCATGGATTCCCTCCATTTGCTCGATA GTTGATCAGATAATTTGCTCGAT                                                                                                                                   ]


>consensus_11443#0 AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATC AAAGGTTGTGATTGATGGAAATTTGATTACCGGGATGGGGCTTGGGACGGTCATTGATTT TTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTGGCAAATGG CATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATA CGCAGACGTGAGACATTTAGTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAGACAA AGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGGCCTTCAACTCTTCTTGAGACAACA ACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTG GGATGGCCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTT GGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGA TGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCT TCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTA GAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAAT TTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGC TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATG CTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 135
fasta sequence
                              [CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA]

[+] EMBL CF301155             [CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAA ]
[-] EMBL CF301154             [                             GATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA]


>consensus_11443#1 CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTT GATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCC GTTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11443#0      AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATC 60
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      AAAGGTTGTGATTGATGGAAATTTGATTACCGGGATGGGGCTTGGGACGGTCATTGATTT 120
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      TTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTGGCAAATGG 180
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      CATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATA 240
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      CGCAGACGTGAGACATTTAGTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAGACAA 300
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      AGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGGCCTTCAACTCTTCTTGAGACAACA 360
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      ACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTG 420
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      GGATGGCCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTT 480
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      GGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGA 540
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      TGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCT 600
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      TCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTA 660
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      GAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAAT 720
consensus_11443#1      ------------------------------------------------------------
                                                                                   

consensus_11443#0      TTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGC 780
consensus_11443#1      ---------------------------------CTGGACTGAAGGAGTAGAAAAATTTGT 27
                                                         * *    * *** *     ****** 

consensus_11443#0      TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATG 840
consensus_11443#1      TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATG 87
                       ********************************************** ***** *******

consensus_11443#0      CTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAA 900
consensus_11443#1      CTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA------------ 135
                       ********* ********************** ***************            

consensus_11443#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 940
consensus_11443#1      ----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)