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Oryza sativa
cluster # 11446 cluster # 11446       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11446#0 length = 769 sequences # 6  
consensus_11446#1 length = 334 sequences # 1  
consensus_11446#2 length = 331 sequences # 1  
consensus_11446#3 length = 203 sequences # 1  

consensusID : consensus_11446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 769
fasta sequence
                              [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC-CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG]

[+] EMBL AU184871             [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU078360             [ GGTGAGAGCGGGAGTNGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACNGCTACCCGGCGCA  CGCNACCCCGCGGGGTACNCGTACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB653346             [   TGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATG                                                                                                                                                        ]
[+] EMBL AU184865             [                                                                                                                                                                                                                                                                            CGTACCCGGCGGCGAACNCCGGGAGGCCTGGCCGCANCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCNCGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAAaaaaaaa                                                                                                                                                   ]
[+] EMBL AU070724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCNTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGNAAATATATAAATATGATTTGGNATGCGTATTGTCTAAAAAAAAAA                                                                                                                                    ]
[+] EMBL AK058770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAATCGTTGTGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG]


>consensus_11446#0 TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCG CCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAG CCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACG ACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACC CGGCGCAGCCGCCCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCC GCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCG GCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCG GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT AAATATGATTTGGAATGCGTATTGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTACTT TTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAA TTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG



consensusID : consensus_11446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence
                              [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA]

[+] EMBL OSA298285            [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA]


>consensus_11446#1 TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATAT ATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACG TAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATC GGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGT TGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAG GACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA



consensusID : consensus_11446#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]

[+] EMBL AU095626             [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]


>consensus_11446#2 GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGG CGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTT ACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCG CACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCG TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA



consensusID : consensus_11446#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence
                              [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA]

[+] EMBL BQ907259             [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA]


>consensus_11446#3 CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGC AGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAAT GCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGA ATGCGTATTGTCTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11446#0      TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCG 60
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      CCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAG 120
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      CCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACG 180
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      ACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACC 240
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      --------------------------------TTTTCGTCCGCAATATTTTGTTTGATTT 28
                                                                                   

consensus_11446#0      CGGCGCAGCCGCCCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCC 300
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      TATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAA 88
                                                                                   

consensus_11446#0      GCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCG 360
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      AACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCAC 148
                                                                                   

consensus_11446#0      GCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCG 420
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      -------------------GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCG 41
consensus_11446#1      AACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTG 208
                                                                                   

consensus_11446#0      GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 480
consensus_11446#3      -----------------------------------CCGAACACGAGCAGATAAGCAACAA 25
consensus_11446#2      GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 101
consensus_11446#1      ACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTG 268
                                                                * ***  * *    * *  

consensus_11446#0      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 540
consensus_11446#3      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 85
consensus_11446#2      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 161
consensus_11446#1      CTCGTGTTC-TATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTT 327
                       ********* ************************  ***  *******************

consensus_11446#0      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 600
consensus_11446#3      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 145
consensus_11446#2      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 221
consensus_11446#1      GCTCTTA----------------------------------------------------- 334
                       *******                                                     

consensus_11446#0      AAATATG-ATTTGGAATGCGTAT-TGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTAC 658
consensus_11446#3      AAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA-- 203
consensus_11446#2      AAATATG-ATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 280
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      TTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCA 718
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA--------- 331
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      AATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG 769
consensus_11446#3      ---------------------------------------------------
consensus_11446#2      ---------------------------------------------------
consensus_11446#1      ---------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)