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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence
[NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGCGGGCACAAGGTGGAGGCCCGCAACGCGCTGGAG-AACTACGCG-TACAA-CATGCGCAACAC-GGTGCGCGACGAGAAGAT-CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTATA-TTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162018 [NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGCGGGCACAAGGTGGAGGCCCGCAACGCGCTGGAG AACTACGCG TACAA CATGCGCAACAC GGTGCGCGACGAGAAGAT CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAaaaaaa ]
[+] EMBL AU161265 [ CGNTGGAGAAACTACGCGTTACAA CATGCGCAACAC GTTCCGCGACGAGAAGATCCGCTTCCAAGTTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTATA TTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAAAA ]
[+] EMBL AU162016 [ acgGCG TACAACCATGCGCAACACGGGTGCCCGACGAGAAGAT CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGNACGCCATCGA GATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTAaa aaaaaa ]
[+] EMBL C28845 [ AGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCG CGGTGGTCCGGGGNGCATGGACGAAGACGCCCCCAACGGCAGTNCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTTACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTna ]
[+] EMBL AU166954 [ gnCGGTGGCAACGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAANAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTNTATGATCCNATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTNTGCTTTGAACTCGGGAGTTCANAAGTATAATGTTNTTTTATACTTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGNTTNAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[ACGCCCCCAACGGCAGTGCCGGCNCCGGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATTATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093119 [ACGCCCCCAACGGCAGTGCCGGCNCCGGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATTATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 334 fasta sequence
[CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGTATATGNCATGTTGAGCGGGNCGA-AGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97682 [CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGTATATGNCATGTTGAGCGGGNCGA AGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761260 [ agaGGACGAGACAAGGGGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAA ]
consensusID : consensus_11453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[TCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA763993 [TCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11453#1 ------------------------------------------------------------
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGC 60
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ------------------------------------------------------------
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GGGCACAAGGTGGAGGCCCGCAACGCGCTGGAGAACTACGCGTACAACATGCGCAACACG 120
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ------------------------------------------------------------
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GTGCGCGACGAGAAGATCGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGAC 180
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ------------------------------------------------------------
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTC 240
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ------------------------------------------------------------
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAG 300
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ----------------------------------ACGCCCCCAACGGCAGTGCCGGCNCC 26
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACC 360
consensus_11453#2 ----------------CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACC 44
consensus_11453#1 GGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGT 86
consensus_11453#3 ------------------------------------------------------------
consensus_11453#0 GGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGT 420
consensus_11453#2 GGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGT 104
consensus_11453#1 ATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCT 146
consensus_11453#3 ---------------------------------------TCTGGGACGTCATCATCATCT 21
consensus_11453#0 ATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCT 480
consensus_11453#2 ATATGNCATGTTGAGCGGGNCGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCT 164
* *******************
consensus_11453#1 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGT 206
consensus_11453#3 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGT 81
consensus_11453#0 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGT 540
consensus_11453#2 TTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGT 224
**** **************************** **************************
consensus_11453#1 TATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATT 266
consensus_11453#3 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 141
consensus_11453#0 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 600
consensus_11453#2 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 284
*********************** ***************** * ****************
consensus_11453#1 ATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 326
consensus_11453#3 ATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 201
consensus_11453#0 ATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 660
consensus_11453#2 ATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 334
******* * * * * *** ** **
consensus_11453#1 TCTTTTAGTTA-------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 367
consensus_11453#3 TCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 261
consensus_11453#0 TCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTT 720
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 AAAA-------------------------------------------------------- 371
consensus_11453#3 AAAAA------------------------------------------------------- 266
consensus_11453#0 TTATATTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAA 780
consensus_11453#2 ------------------------------------------------------------
consensus_11453#1 ----------
consensus_11453#3 ----------
consensus_11453#0 AAAAAAAAAA 790
consensus_11453#2 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||