These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence [NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGCGGGCACAAGGTGGAGGCCCGCAACGCGCTGGAG-AACTACGCG-TACAA-CATGCGCAACAC-GGTGCGCGACGAGAAGAT-CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTATA-TTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAAAAAAAAAAAA] [+] EMBL AU162018 [NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGCGGGCACAAGGTGGAGGCCCGCAACGCGCTGGAG AACTACGCG TACAA CATGCGCAACAC GGTGCGCGACGAGAAGAT CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAaaaaaa ] [+] EMBL AU161265 [ CGNTGGAGAAACTACGCGTTACAA CATGCGCAACAC GTTCCGCGACGAGAAGATCCGCTTCCAAGTTCCCCGCCGACGACAAGAAGAAGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTATA TTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAAAA ] [+] EMBL AU162016 [ acgGCG TACAACCATGCGCAACACGGGTGCCCGACGAGAAGAT CGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGNACGCCATCGA GATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTTTTAaa aaaaaa ] [+] EMBL C28845 [ AGATCGAGGACGCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCG CGGTGGTCCGGGGNGCATGGACGAAGACGCCCCCAACGGCAGTNCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTTACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTna ] [+] EMBL AU166954 [ gnCGGTGGCAACGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGAGCGGGACGAANAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTNTATGATCCNATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTNTGCTTTGAACTCGGGAGTTCANAAGTATAATGTTNTTTTATACTTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGNTTNAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [ACGCCCCCAACGGCAGTGCCGGCNCCGGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATTATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093119 [ACGCCCCCAACGGCAGTGCCGGCNCCGGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATTATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 334 fasta sequence [CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGTATATGNCATGTTGAGCGGGNCGA-AGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97682 [CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGTATATGNCATGTTGAGCGGGNCGA AGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761260 [ agaGGACGAGACAAGGGGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTAAAAAAAAAAAAAAA ] consensusID : consensus_11453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [TCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA763993 [TCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11453#1 ------------------------------------------------------------ consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 NAGGAGATCGAGCGGATGTGCAGNAGGCCGAGAAGTACAAGGCCGAGGACGAGCAGGTGC 60 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ------------------------------------------------------------ consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GGGCACAAGGTGGAGGCCCGCAACGCGCTGGAGAACTACGCGTACAACATGCGCAACACG 120 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ------------------------------------------------------------ consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GTGCGCGACGAGAAGATCGCCTCCAAGCTCCCCGCCGACGACAAGAAGAAGATCGAGGAC 180 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ------------------------------------------------------------ consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTC 240 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ------------------------------------------------------------ consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GAGGACAAGATGAAGGAGCTCGAGAGCCTCTGCAATCCGATCATCTCAAAGATGTACCAG 300 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ----------------------------------ACGCCCCCAACGGCAGTGCCGGCNCC 26 consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACC 360 consensus_11453#2 ----------------CGGCGGGCATGGACGAAGACGCCCCCAACGGCAGTGCCGGCACC 44 consensus_11453#1 GGCGGTGGCAGCGGCGNTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGT 86 consensus_11453#3 ------------------------------------------------------------ consensus_11453#0 GGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGT 420 consensus_11453#2 GGCGGTGGCAGCGGCGCTGGCCCCAAGATCGNGGAAGTGGACTAAGCGAGTGGACTGAGT 104 consensus_11453#1 ATATGACATGTTGANCGGGACGAAGAAGGAGCGATGCATTTTGGGACGTCATCATCATCT 146 consensus_11453#3 ---------------------------------------TCTGGGACGTCATCATCATCT 21 consensus_11453#0 ATATGACATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCT 480 consensus_11453#2 ATATGNCATGTTGAGCGGGNCGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCT 164 * ******************* consensus_11453#1 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGT 206 consensus_11453#3 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGT 81 consensus_11453#0 TTAGAGTTTCATGCGGTCAAGCCGAATAATGTCACTTGAGTTGTTACTGGTTGTGACAGT 540 consensus_11453#2 TTAGNGTTTCATGCGGTCAAGCCGAATAATGTCNCTTGAGTTGTTACTGGTTGTGACAGT 224 **** **************************** ************************** consensus_11453#1 TATATCTTGTTAAGGTTCTATGANCCGATGTAGGTTGAGAGNGNTATATATATATATATT 266 consensus_11453#3 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 141 consensus_11453#0 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 600 consensus_11453#2 TATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATATATATATATATATT 284 *********************** ***************** * **************** consensus_11453#1 ATTACTACTNCGGAGTGATNGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 326 consensus_11453#3 ATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 201 consensus_11453#0 ATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGT 660 consensus_11453#2 ATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 334 ******* * * * * *** ** ** consensus_11453#1 TCTTTTAGTTA-------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 367 consensus_11453#3 TCTTTTAGTTATCTCTGGTGTTCTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 261 consensus_11453#0 TCTTTTAGTTATCTCTGGTGTTCTGCTTTGAACTCGGGAGTTCAGAAGTATAATGTTCTT 720 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 AAAA-------------------------------------------------------- 371 consensus_11453#3 AAAAA------------------------------------------------------- 266 consensus_11453#0 TTATATTCGTTGCAGTGTCTATGATTACTCCGTACTTTTATGATTACTCCGTAAAAAAAA 780 consensus_11453#2 ------------------------------------------------------------ consensus_11453#1 ---------- consensus_11453#3 ---------- consensus_11453#0 AAAAAAAAAA 790 consensus_11453#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||