cluster # 1146

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Oryza sativa
cluster # 1146 cluster # 1146 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1146#0 length = 898 sequences # 1

consensus_1146#1 length = 598 sequences # 1

consensusID : consensus_1146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 898
fasta sequence

                              [CNATCATCGACTTTCANCAAATTAAGATGGCTGCTGCCTTCTCCTCCACCGTTGGAGCTCCGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAAGAAACANGTGACATCCGCGGTGAACTACCATGGCAAGAGCTCCNACATCAACAGGTTCAAGGTGATGGCCAAGGAGCTGGACNAAGGCAANCANACCGACCANGACAGGTGGAAGGGTCTCGCCTACCACATCTCCNATGACCANCANGACATCACCANGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGGGTNATGGCACCCACGAAGCCGTCCTCAGCTCCTACNAATNCCTCANCCAGGGTCTCNGAACNTTCGACTTCCACAACACCNTGGGANGCTTCTNCNTCNCCCCTGCTTTCATGGANAAACTCNTCCTCCACATCTCCCANAACTTCATGAACCTCCCCNACATCNANGTCCCNCTCATCCTGNGTTTCTTGGGAAGCAAAGGTNNNGGAAAAATNCCTCCCCTTGTNANCTCCTCTCCCCCCNNAATGGGGGATNAACCCCCNCCTTAATNAACCCCCGGAAAACTTGGAAAAACCGGCNACCCCCCGAAAAACCCGCNAAACTTAATNNGGCCCCGTTCCCTTNAAGGCGGCNGAAATCCTCCNNAAANGGGGAANAAATTTCTGCCTCCTTCCTCCNCCAATTTGGAACCCCGGGTTCCNGTTCCCNTTGGGGAAGGCCCCCCCCCCNTTCCCCGGTGNAAACAACCCCAATTGTTTAAACCCCCCCCNTNAATNAAAATTCCCCCAANAANCCCNNCCCANCTTTNCNNCTTCCCCCNGGGATTTTTNTNCNAGGGAAGGAAAAAACCCCCNTNTTTTCCCNTCNTCCNTNCCCC]

[+] EMBL BE229693             [CNATCATCGACTTTCANCAAATTAAGATGGCTGCTGCCTTCTCCTCCACCGTTGGAGCTCCGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAAGAAACANGTGACATCCGCGGTGAACTACCATGGCAAGAGCTCCNACATCAACAGGTTCAAGGTGATGGCCAAGGAGCTGGACNAAGGCAANCANACCGACCANGACAGGTGGAAGGGTCTCGCCTACCACATCTCCNATGACCANCANGACATCACCANGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGGGTNATGGCACCCACGAAGCCGTCCTCAGCTCCTACNAATNCCTCANCCAGGGTCTCNGAACNTTCGACTTCCACAACACCNTGGGANGCTTCTNCNTCNCCCCTGCTTTCATGGANAAACTCNTCCTCCACATCTCCCANAACTTCATGAACCTCCCCNACATCNANGTCCCNCTCATCCTGNGTTTCTTGGGAAGCAAAGGTNNNGGAAAAATNCCTCCCCTTGTNANCTCCTCTCCCCCCNNAATGGGGGATNAACCCCCNCCTTAATNAACCCCCGGAAAACTTGGAAAAACCGGCNACCCCCCGAAAAACCCGCNAAACTTAATNNGGCCCCGTTCCCTTNAAGGCGGCNGAAATCCTCCNNAAANGGGGAANAAATTTCTGCCTCCTTCCTCCNCCAATTTGGAACCCCGGGTTCCNGTTCCCNTTGGGGAAGGCCCCCCCCCCNTTCCCCGGTGNAAACAACCCCAATTGTTTAAACCCCCCCCNTNAATNAAAATTCCCCCAANAANCCCNNCCCANCTTTNCNNCTTCCCCCNGGGATTTTTNTNCNAGGGAAGGAAAAAACCCCCNTNTTTTCCCNTCNTCCNTNCCCC]




>consensus_1146#0
CNATCATCGACTTTCANCAAATTAAGATGGCTGCTGCCTTCTCCTCCACCGTTGGAGCTC
CGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAAGAAACANGTGACATCCGCGG
TGAACTACCATGGCAAGAGCTCCNACATCAACAGGTTCAAGGTGATGGCCAAGGAGCTGG
ACNAAGGCAANCANACCGACCANGACAGGTGGAAGGGTCTCGCCTACCACATCTCCNATG
ACCANCANGACATCACCANGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGG
GTNATGGCACCCACGAAGCCGTCCTCAGCTCCTACNAATNCCTCANCCAGGGTCTCNGAA
CNTTCGACTTCCACAACACCNTGGGANGCTTCTNCNTCNCCCCTGCTTTCATGGANAAAC
TCNTCCTCCACATCTCCCANAACTTCATGAACCTCCCCNACATCNANGTCCCNCTCATCC
TGNGTTTCTTGGGAAGCAAAGGTNNNGGAAAAATNCCTCCCCTTGTNANCTCCTCTCCCC
CCNNAATGGGGGATNAACCCCCNCCTTAATNAACCCCCGGAAAACTTGGAAAAACCGGCN
ACCCCCCGAAAAACCCGCNAAACTTAATNNGGCCCCGTTCCCTTNAAGGCGGCNGAAATC
CTCCNNAAANGGGGAANAAATTTCTGCCTCCTTCCTCCNCCAATTTGGAACCCCGGGTTC
CNGTTCCCNTTGGGGAAGGCCCCCCCCCCNTTCCCCGGTGNAAACAACCCCAATTGTTTA
AACCCCCCCCNTNAATNAAAATTCCCCCAANAANCCCNNCCCANCTTTNCNNCTTCCCCC
NGGGATTTTTNTNCNAGGGAAGGAAAAAACCCCCNTNTTTTCCCNTCNTCCNTNCCCC

consensusID : consensus_1146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [TCCACCGTTGGAGCTCCGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAANAANCANGTGACATCGGCGGTGAACTACCATGGCAAGAGCTCCAACATCAACAGGTTCAAGGTGATGGCCAANGAGCTGGACCAAGGCNANCANACCGACCAGGACAGGTGGAANGGTCTCGCCTACCACATCTCCGATGACCANCANGACATCACCAGGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGGGTGATGGCACCCACNAAGCCGTCCTCACTCCTACNANTNCCTCANCCAAGGTCTCANAACNTNCNACTTCCACACACCATGGGANGCTTCTACATCGCCCCTGCTTTCATGGACAAACTCNTCNTCCACATCTCCNANAACTTCATGACCCTCCCCCACATCAANGTCCCACTCATCCTGNGTNTCTGGGGANGCCAGGGTCANGGAAAATCCTTCCNNTGTNANCTCCTCTTCCCCANATGGGGATCNACCCNTCNTGATNANCNCCGGAAACTGGANAACGCCACNCCGGAAAACCCGCAANCTGATCAGGCNCNGTNCCTGAGGCGCANACATCNTCCA]

[+] EMBL BE228668             [TCCACCGTTGGAGCTCCGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAANAANCANGTGACATCGGCGGTGAACTACCATGGCAAGAGCTCCAACATCAACAGGTTCAAGGTGATGGCCAANGAGCTGGACCAAGGCNANCANACCGACCAGGACAGGTGGAANGGTCTCGCCTACCACATCTCCGATGACCANCANGACATCACCAGGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGGGTGATGGCACCCACNAAGCCGTCCTCACTCCTACNANTNCCTCANCCAAGGTCTCANAACNTNCNACTTCCACACACCATGGGANGCTTCTACATCGCCCCTGCTTTCATGGACAAACTCNTCNTCCACATCTCCNANAACTTCATGACCCTCCCCCACATCAANGTCCCACTCATCCTGNGTNTCTGGGGANGCCAGGGTCANGGAAAATCCTTCCNNTGTNANCTCCTCTTCCCCANATGGGGATCNACCCNTCNTGATNANCNCCGGAAACTGGANAACGCCACNCCGGAAAACCCGCAANCTGATCAGGCNCNGTNCCTGAGGCGCANACATCNTCCA]




>consensus_1146#1
TCCACCGTTGGAGCTCCGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAANAAN
CANGTGACATCGGCGGTGAACTACCATGGCAAGAGCTCCAACATCAACAGGTTCAAGGTG
ATGGCCAANGAGCTGGACCAAGGCNANCANACCGACCAGGACAGGTGGAANGGTCTCGCC
TACCACATCTCCGATGACCANCANGACATCACCAGGGGGAANGGTTTCGTCCACTCCCTT
TTCCANGCTCCCACGGGTGATGGCACCCACNAAGCCGTCCTCACTCCTACNANTNCCTCA
NCCAAGGTCTCANAACNTNCNACTTCCACACACCATGGGANGCTTCTACATCGCCCCTGC
TTTCATGGACAAACTCNTCNTCCACATCTCCNANAACTTCATGACCCTCCCCCACATCAA
NGTCCCACTCATCCTGNGTNTCTGGGGANGCCAGGGTCANGGAAAATCCTTCCNNTGTNA
NCTCCTCTTCCCCANATGGGGATCNACCCNTCNTGATNANCNCCGGAAACTGGANAACGC
CACNCCGGAAAACCCGCAANCTGATCAGGCNCNGTNCCTGAGGCGCANACATCNTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1146#0      CNATCATCGACTTTCANCAAATTAAGATGGCTGCTGCCTTCTCCTCCACCGTTGGAGCTC 60
consensus_1146#1      --------------------------------------------TCCACCGTTGGAGCTC 16
                                                                  ****************

consensus_1146#0      CGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAAGAAACANGTGACATCCGCGG 120
consensus_1146#1      CGGCGTCCACTCCGACCAACTTCCTGGGGAAGAAGCTGAANAANCANGTGACATCGGCGG 76
                      **************************************** ** *********** ****

consensus_1146#0      TGAACTACCATGGCAAGAGCTCCNACATCAACAGGTTCAAGGTGATGGCCAAGGAGCTGG 180
consensus_1146#1      TGAACTACCATGGCAAGAGCTCCAACATCAACAGGTTCAAGGTGATGGCCAANGAGCTGG 136
                      *********************** **************************** *******

consensus_1146#0      ACNAAGGCAANCANACCGACCANGACAGGTGGAAGGGTCTCGCCTACCACATCTCCNATG 240
consensus_1146#1      ACCAAGGCNANCANACCGACCAGGACAGGTGGAANGGTCTCGCCTACCACATCTCCGATG 196
                      ** ***** ************* *********** ********************* ***

consensus_1146#0      ACCANCANGACATCACCANGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGG 300
consensus_1146#1      ACCANCANGACATCACCAGGGGGAANGGTTTCGTCCACTCCCTTTTCCANGCTCCCACGG 256
                      ****************** *****************************************

consensus_1146#0      GTNATGGCACCCACGAAGCCGTCCTCAGCTCCTACNAATNCCTCANCCAGGGTCTCNGAA 360
consensus_1146#1      GTGATGGCACCCACNAAGCCGTCCTCA-CTCCTACNANTNCCTCANCCAAGGTCTCANAA 315
                      ** *********** ************ ********* *********** ******  **

consensus_1146#0      CNTTCGACTTCCACAACACCNTGGGANGCTTCTNCNTCNCCCCTGCTTTCATGGANAAAC 420
consensus_1146#1      CNTNCNACTTCCACA-CACCATGGGANGCTTCTACATCGCCCCTGCTTTCATGGACAAAC 374
                      *** * ********* **** ************ * ** **************** ****

consensus_1146#0      TCNTCCTCCACATCTCCCANAACTTCATGAACCTCCCCNACATCNANGTCCCNCTCATCC 480
consensus_1146#1      TCNTCNTCCACATCTCCNANAACTTCATGACCCTCCCCCACATCAANGTCCCACTCATCC 434
                      ***** *********** ************ ******* ***** ******* *******

consensus_1146#0      TGNGTTTCTTGGGAAGCAAAGGTNNNGGAAAAATNCCTCCCCTTGTNANCTCCTCTCCCC 540
consensus_1146#1      TGNGTNTCTGGGGANGCCAGGGTCANGGAAAA--TCCTTCCNNTGTNANCTCCTCTTCCC 492
                      ***** *** **** ** * ***  *******   *** **  ************* ***

consensus_1146#0      CCNNAATGGGGGATNAACCCCCNCCTTAATNAACCCCCGGAAAACTTGGAAAAACCGGCN 600
consensus_1146#1      C--ANATGGGG-ATCNACCCNTCNT---GATNANCNCCGGAAA--CTGGANAA-----CG 539
                      *    ****** **  ****            * * *******   **** **     * 

consensus_1146#0      ACCCCCCGAAAAACCCGCNAAACTTAATNNGGCCCCGTTCCCTTNAAGGCGGCNGAAATC 660
consensus_1146#1      CCACNCCGGAAAACCCGCAA--NCTGATCAGGCNCNGTNCC---TGAGGCG-CANACATC 593
                       * * *** ********* *    * **  *** * ** **     ***** *  * ***

consensus_1146#0      CTCCNNAAANGGGGAANAAATTTCTGCCTCCTTCCTCCNCCAATTTGGAACCCCGGGTTC 720
consensus_1146#1      NTCCA------------------------------------------------------- 598
                       ***                                                        

consensus_1146#0      CNGTTCCCNTTGGGGAAGGCCCCCCCCCCNTTCCCCGGTGNAAACAACCCCAATTGTTTA 780
consensus_1146#1      ------------------------------------------------------------
                                                                                  

consensus_1146#0      AACCCCCCCCNTNAATNAAAATTCCCCCAANAANCCCNNCCCANCTTTNCNNCTTCCCCC 840
consensus_1146#1      ------------------------------------------------------------
                                                                                  

consensus_1146#0      NGGGATTTTTNTNCNAGGGAAGGAAAAAACCCCCNTNTTTTCCCNTCNTCCNTNCCCC 898
consensus_1146#1      ----------------------------------------------------------