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Oryza sativa
cluster # 11465 cluster # 11465       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11465#0 length = 1325 sequences # 4  
consensus_11465#1 length = 1186 sequences # 3  
consensus_11465#2 length = 445 sequences # 1  
consensus_11465#3 length = 320 sequences # 1  

consensusID : consensus_11465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1325
fasta sequence
                              [GCCACCCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTAC-CCGTGC-CAG-GCCTAC-GCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTAGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGCGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCAC--GGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGACGCCGTCCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGT]

[+] EMBL CB645242             [GCCACCCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTAC CCGTGC CAG GCCTAC GCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTAGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGCGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCAC  GGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB645100             [GCCAACCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTAC CCGTGC CAG GCCTAC GCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTAGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGCGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCAC  GGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB619746             [                                                                                                                                                                                               cTACACCGTGCACCGCGCCTACAGCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTCGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGAGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCAC  GGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGCGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGACGCCGTCCAATACGCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB619867             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCGCCACGGGGCGTTCGCCGNCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGCCGCCGTCCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGT]


>consensus_11465#0 GCCACCCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCG CGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCG GCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACG GCGAACGCCACGTACCCGTGCCAGGCCTACGCGCTCTACCGCGCGGGCTTCGGCGGGGTG CCGCTCGAGTTAGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCAC GCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTC CAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAAC GCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAG GCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTC ACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGCGGACAACGCCACCGCGCTCGTCACC TACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCACGGCGTTCGCCGTCGACGCC CAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAG ATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAAC AACATCTCCACGACGCCCGCGTCCCCGACGCCGTCCAATACGCCTGCCCCCACCGTCGTG AGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGG CTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGG CGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCC GCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAG TGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTC GACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTC GCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTGAAC CACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTAC CTGGT



consensusID : consensus_11465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1186
fasta sequence
                              [AATGATAGGAGTGACAAAGTATGCCAAATTGCCAATTGTCAAATGGCATTTGCATTTTTTTTAGTATTATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCCATTTGATCTCAGAAATCAGAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTGATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGCCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGTGCAGAAACTGCATATAGAACTATAGAAGCATCAAGCATTTCTGTGT]

[+] EMBL AK106773             [AATGATAGGAGTGACAAAGTATGCCAAATTGCCAATTGTCAAATGGCATTTGCATTTTTTTTAGTATTATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCCATTTGATCTCAGAAATCAGAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTGATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGTGCAGAAACTGCATATAGAACTATAGAAGCATCAAGCA         ]
[-] EMBL CB645243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACGTCCTGCTTGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGCCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGTGCAGAAACTGCATATAGACCTATAGAGGCATCAAGCATTTCTGTGT]
[-] EMBL CB645101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGCCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCCCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCCCCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGTGCAGAAACTGCATATCGATAAAGAGAAGCATCAAGCATTTCTG   ]


>consensus_11465#1 AATGATAGGAGTGACAAAGTATGCCAAATTGCCAATTGTCAAATGGCATTTGCATTTTTT TTAGTATTATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCC ATTTGATCTCAGAAATCAGAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTG ATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGC ATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTG GACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCAC ATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTG GTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATC GCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACG CAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTG TTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGAC AGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGCCCGGGAGGAGAGG CTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCG GGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAG CGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGAC TACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTC GCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAA TAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAG GTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGT GCAGAAACTGCATATAGAACTATAGAAGCATCAAGCATTTCTGTGT



consensusID : consensus_11465#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence
                              [CTGCTCTGCGTTCTGCAATGCGGGAGAGGAGGCGGCGGCGACGATGGCGTCGCACGAGGCGGATGGGTGCGCGGAGGAGGGAGGGGACGAGACCCACGAGGCGGCGACGGGGGAGGGCTACGCGCGGGCGGCGGGGCAGCCGCTGCTGGTGCCGCTCAAGTGCGGGTGCCCCTCCCGCTCGCCCAATGCATACTCGCCTATGCAGTACCAGATCAACGCCGGCGACACCTTTTGGATCGTCTCCACCACCAAGCTGCAGAACTTGAAGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTACCCACCAACCTCGGCATTGGCCAGATCGACATGTTCCCCGCCGCTTGTTCCCCTCCGTTCCCCGCTGCGTGTTCCCCTCCGTTTGTCGCCGCAGCCTGGTCGCCTCCCTCCGAACGCTGCCGCTGCCTGGTCGCGGGA]

[+] EMBL AK107942             [CTGCTCTGCGTTCTGCAATGCGGGAGAGGAGGCGGCGGCGACGATGGCGTCGCACGAGGCGGATGGGTGCGCGGAGGAGGGAGGGGACGAGACCCACGAGGCGGCGACGGGGGAGGGCTACGCGCGGGCGGCGGGGCAGCCGCTGCTGGTGCCGCTCAAGTGCGGGTGCCCCTCCCGCTCGCCCAATGCATACTCGCCTATGCAGTACCAGATCAACGCCGGCGACACCTTTTGGATCGTCTCCACCACCAAGCTGCAGAACTTGAAGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTACCCACCAACCTCGGCATTGGCCAGATCGACATGTTCCCCGCCGCTTGTTCCCCTCCGTTCCCCGCTGCGTGTTCCCCTCCGTTTGTCGCCGCAGCCTGGTCGCCTCCCTCCGAACGCTGCCGCTGCCTGGTCGCGGGA]


>consensus_11465#2 CTGCTCTGCGTTCTGCAATGCGGGAGAGGAGGCGGCGGCGACGATGGCGTCGCACGAGGC GGATGGGTGCGCGGAGGAGGGAGGGGACGAGACCCACGAGGCGGCGACGGGGGAGGGCTA CGCGCGGGCGGCGGGGCAGCCGCTGCTGGTGCCGCTCAAGTGCGGGTGCCCCTCCCGCTC GCCCAATGCATACTCGCCTATGCAGTACCAGATCAACGCCGGCGACACCTTTTGGATCGT CTCCACCACCAAGCTGCAGAACTTGAAGCAGTACCAGGCCGTCGAGCGGGTGAACCCCAC GCTGGTACCCACCAACCTCGGCATTGGCCAGATCGACATGTTCCCCGCCGCTTGTTCCCC TCCGTTCCCCGCTGCGTGTTCCCCTCCGTTTGTCGCCGCAGCCTGGTCGCCTCCCTCCGA ACGCTGCCGCTGCCTGGTCGCGGGA



consensusID : consensus_11465#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence
                              [TTTTTTTTTTTTTTTTTATAGTTCTATATGCAGTTTCTGCACAACTCTGAGTTGCAAGTAACAACCAACTACTCCCCACGAAAACTAATTGACAATCCCAACCTCGCGTGTAACGTAACGACAGAGATTATTTAGCTACCTGCTCTCTATCGCCACTCGCTATTTACTACTAGTACAAGTTCTACCACTAACAAACACGGGCACTGGGGATGATTGGCCCGCGACACCTCACCGCGCTGCGATCCCGCCGCTGCTGGCGACGGACACGCTCTCGCCCGAGTAGTCGCCGAAGCTCTCGTCTGCCTTCGACAGCGTGTACG]

[+] EMBL CA757864             [TTTTTTTTTTTTTTTTTATAGTTCTATATGCAGTTTCTGCACAACTCTGAGTTGCAAGTAACAACCAACTACTCCCCACGAAAACTAATTGACAATCCCAACCTCGCGTGTAACGTAACGACAGAGATTATTTAGCTACCTGCTCTCTATCGCCACTCGCTATTTACTACTAGTACAAGTTCTACCACTAACAAACACGGGCACTGGGGATGATTGGCCCGCGACACCTCACCGCGCTGCGATCCCGCCGCTGCTGGCGACGGACACGCTCTCGCCCGAGTAGTCGCCGAAGCTCTCGTCTGCCTTCGACAGCGTGTACG]


>consensus_11465#3 TTTTTTTTTTTTTTTTTATAGTTCTATATGCAGTTTCTGCACAACTCTGAGTTGCAAGTA ACAACCAACTACTCCCCACGAAAACTAATTGACAATCCCAACCTCGCGTGTAACGTAACG ACAGAGATTATTTAGCTACCTGCTCTCTATCGCCACTCGCTATTTACTACTAGTACAAGT TCTACCACTAACAAACACGGGCACTGGGGATGATTGGCCCGCGACACCTCACCGCGCTGC GATCCCGCCGCTGCTGGCGACGGACACGCTCTCGCCCGAGTAGTCGCCGAAGCTCTCGTC TGCCTTCGACAGCGTGTACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11465#0      GCCACCCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCG 60
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      ----------------------------------------------------AATGATAG 8
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      CGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCG 120
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      GAGTGACAAAGTATGCCAAATTGCCAATTGTCAAATGGCATTTGCATTTTTTTTAGTATT 68
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACG 180
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      ATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCCATTTGATC 128
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GCGAACGCCACGTACCCGTGCCAGGCCTACGCGCTCTACCGCGC-GGGCTTCGGCGG-GG 238
consensus_11465#2      ---------------------CTGCTCTGCGTTCTGCAATGCGG-GAGAGGAGGCGGCGG 38
consensus_11465#1      TCAGAAATCA-GAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTGATGTTGG 187
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      TGCCGCTCGAGTTAGCGGCCATCGGCGACCTCTTCGCG---GCCAGCCGATTCATGGTCG 295
consensus_11465#2      CGACGATGGCGTCGCACGAGGCGGATGGGTGCGCGGAG---GAGGGAGGGGACGAGACC- 94
consensus_11465#1      CAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACT 247
consensus_11465#3      -------------------------------------TTTTTTTTTTTTTTTTTATAGTT 23
                                                                                   

consensus_11465#0      CGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGC 355
consensus_11465#2      CACGAGGCGGCGACGGGGGAGGGCTA--CGCGCGGGCGGCGGGGCAGCCGCTGCTGGTGC 152
consensus_11465#1      CGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGT 307
consensus_11465#3      CTATATGCAGTTTCTGCACAACTCTG-AGTTGCAAGTAAC-AACCAACTACTCCCCACGA 81
                       *      *     *                     *              **      * 

consensus_11465#0      CGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAAC--GCGTACGCGCCCATGCAGTACCA 413
consensus_11465#2      CGCTCAAGTGCGGGTGCCCCTCCCGCTCGCCCAAT--GCATACTCGCCTATGCAGTACCA 210
consensus_11465#1      GGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCC 367
consensus_11465#3      AAACTAATTGACAATCCCAACCTCGCGTGTAACGTAACGACAGAGATTATTTAGCTACCT 141
                                       **   * **   *                            ** 

consensus_11465#0      GATCAACGCCGGCGACACCT-ACTGGATCGTCTCCAC---CACCAAGCTGCA----GAAC 465
consensus_11465#2      GATCAACGCCGGCGACACCT-TTTGGATCGTCTCCAC---CACCAAGCTGCA----GAAC 262
consensus_11465#1      --TCGACCTCGCCCACGGCT-TGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGC 424
consensus_11465#3      GCTCTCTATCGCCACTCGCTATTTACTACTAGTACAAGTTCTACCACTAACA-----AAC 196
                         **     ** *     **        *     *     *  *      *        *

consensus_11465#0      CTGACG----CAGTACCAG-GCCGTCGAGCGGGTGAACCCCACGCTGGT---GCCCACCA 517
consensus_11465#2      TTGAAG----CAGTACCAG-GCCGTCGAGCGGGTGAACCCCACGCTGGT---ACCCACCA 314
consensus_11465#1      ACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCA 484
consensus_11465#3      ACGGGCA---CTGGGGATG-ATTGGCCCGCGACACCTCACCGCGCTGCG--ATCCCGCCG 250
                                 *       *    * *  **       *  *  **          * ** 

consensus_11465#0      ACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTC-TGC-CAGTGCCCGACCGCCGC 575
consensus_11465#2      ACCTCGGCATTGGCCAGATCGACATGTTCCCCGCCGCT-TGT-TCCCCTCCGTTCCCCGC 372
consensus_11465#1      ACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGG 544
consensus_11465#3      CTGCTGGCGACGGACACGCTCTCGCCCGAGTAGTCGCCGAAGCTCTCGTCTGCCTTCGAC 310
                            * *   *   *      *           *              * *    *   

consensus_11465#0      GGACAACGCCACCGC-GCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCA 634
consensus_11465#2      TGCGTGTTCCCCTCC-GTTTGTCGCC--------GCAGCCTGGTCGCCTCCCTCCGAACG 423
consensus_11465#1      GGTACATCGCGCCGGAGTACCTCGCCG-------ACGGCCTCGTCACCACCAA--GATGG 595
consensus_11465#3      AGCGTGTACG-------------------------------------------------- 320
                        *                                                          

consensus_11465#0      TCGCCACGGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGG 694
consensus_11465#2      CTGCCGCTGC-CTGGTCGCGGGA------------------------------------- 445
consensus_11465#1      ACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCG 655
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGT 754
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      ACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGCCCGGGAGG 715
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGACGCCGT 814
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      AGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCC 775
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      CCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAG 874
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      CGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGG 835
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      CCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTG-CAGATGCTGCTGCTGGGCTGC 933
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      CGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCG 895
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      CTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATG-- 991
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      GCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAG 955
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCG 1051
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      GTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTA 1015
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGG 1111
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      GTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACAC 1075
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      AGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGT 1171
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      GCGAGGTTGGGATTGTCA--ATTAGTTTTCGTGGGGAGAAGTTGGTT--GTTACTTGCAA 1131
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      ACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCG 1231
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      CTCAGTTGTGCAGAAACTGCATATAGAACTATAGAAGCATCAAGCATTTCTGTGT----- 1186
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      AAGAGCTCAAAATCCTGCAAAAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCT 1291
consensus_11465#2      ------------------------------------------------------------
consensus_11465#1      ------------------------------------------------------------
consensus_11465#3      ------------------------------------------------------------
                                                                                   

consensus_11465#0      GCATCAACTCGGAAACCGGCGACTGCTACCTGGT 1325
consensus_11465#2      ----------------------------------
consensus_11465#1      ----------------------------------
consensus_11465#3      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)