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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2166 fasta sequence
[TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATC-ATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCTAGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTATATTAGGCCCTGTTTGATCTAATACTTGCAAAAAAAAAACTAGAATAGTAAGTGATTAAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTATACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG-TG-ATGAGTT-GAACT-CCCAGAGAAGGACAG-TAG-AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC-TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA]
[+] EMBL AK101433 [TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATC ATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCTAGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTATATTAGGCCCTGTTTGATCTAATACTTGCAAAAAAAAAACTAGAATAGTAAGTGATTAAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTATACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAGGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATC ]
[+] EMBL CB659865 [ GTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTACGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCATATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGA GGGGGGGGGGGGGGCCAAAACTCACCATCGGTACTAAACTTGTTAAAAAAAGGGCAATAAGACAAAGGCTAGATATTTCTTTCCCTCACCCATTTGGAAAAGGGTGTGGAAGCCATGCAAAATTATTTAAAAGCGAGGTTACCTTTATTGAAAAAAATCTATGTGCCTCTGAACCCCTCAAAATGGA ]
[-] EMBL BU673674 [ CCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA]
[-] EMBL CB966628 [ CCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGC ACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA]
[-] EMBL BU673271 [ CAACGTTGAATGATTTGGAACTCCCCGGAGAAGGACCGTTAGAAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCCATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGC ACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA]
consensusID : consensus_11469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1670 fasta sequence
[AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACATTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGTTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACATGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTT]
[+] EMBL AK107428 [AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACATTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGTTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACATGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTT]
consensusID : consensus_11469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence
[GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCTTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTGCTGCCCAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGGCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACGTGATGAGTTGAACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTGGAATATCATTGTTCCTTAATTTGGTTTAAAAAA]
[+] EMBL CB096551 [GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCTTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTGCTGCCCAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGG ]
[-] EMBL CB659864 [ AGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTAT GGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACGTGATGAGTTGAACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTGGAATATCATTGTTCCTTAATTTGGTTTAAAAAA]
consensusID : consensus_11469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[GTGCAATTAATAGAGTGGGTGAAGAAAGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGTTTCTGCCCAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATTTCAACGGGATGAGTTGAACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAAAACTTGATGGGCAAATGGCCATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCATCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTTTTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTTTAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAAATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATTTCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGGAGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG]
[-] EMBL CB681641 [GTGCAATTAATAGAGTGGGTGAAGAAAGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGTTTCTGCCCAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATTTCAACGGGATGAGTTGAACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAAAACTTGATGGGCAAATGGCCATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCATCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTTTTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTTTAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAAATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATTTCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGGAGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATT 60
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 CTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCT 120
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 GAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAG 180
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 TTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCA 240
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGA 300
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAA 360
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCG 420
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATAT 480
consensus_11469#1 ------------------------------------------------------------
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 TTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGA 540
consensus_11469#1 ------------------------AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGC 36
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 GGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGA 600
consensus_11469#1 TGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACC 96
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGA 660
consensus_11469#1 GGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAA 156
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 GCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCG 720
consensus_11469#1 TCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGAC 216
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACC 780
consensus_11469#1 TGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGAT 276
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAG 840
consensus_11469#1 CAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAAC 336
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 CAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATC 900
consensus_11469#1 TCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACA 396
consensus_11469#2 ------------------------------------------------------------
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAAT 960
consensus_11469#1 TTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGG 456
consensus_11469#2 -------GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCT 53
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 GCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGA 1020
consensus_11469#1 GGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAG 516
consensus_11469#2 TTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAG 113
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAA 1080
consensus_11469#1 AAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAAT 576
consensus_11469#2 TTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTT 173
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 CTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTC 1140
consensus_11469#1 TATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAAT 636
consensus_11469#2 GNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCA 233
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 CATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCT 1200
consensus_11469#1 GGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGG 696
consensus_11469#2 AGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGAT 293
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCT 1260
consensus_11469#1 TTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACA 756
consensus_11469#2 GAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGC 353
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTAT 1320
consensus_11469#1 TGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCT 816
consensus_11469#2 TCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACA 413
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ATTAGGCCCTGTTTGATCTAATACTTGCAAA----AAAAAAACTAGAATAGTAAGTGATT 1376
consensus_11469#1 ATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCAT 876
consensus_11469#2 GGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACA 473
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 AAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTAT 1436
consensus_11469#1 AACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCAT 936
consensus_11469#2 TGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAA 533
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 ACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAA 1496
consensus_11469#1 GTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAG 996
consensus_11469#2 CAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGG 593
consensus_11469#3 ------------------------------------------------------------
consensus_11469#0 CAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGG 1556
consensus_11469#1 CAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGA 1056
consensus_11469#2 AAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAA 653
consensus_11469#3 ----------------------------------GTGCAATTAATAGAGTGGGTGAAGAA 26
consensus_11469#0 AAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAA 1616
consensus_11469#1 AACAAAGAGA--CAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAA 1114
* ** * * **
consensus_11469#2 AGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGC------TGCTGCC 707
consensus_11469#3 AGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGT------TTCTGCC 80
consensus_11469#0 AGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGC------TACTGCC 1670
consensus_11469#1 AGGCTGATGGAACATGGTCT-GTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACT 1173
***** * * * ** * *** ** **** * * * *
consensus_11469#2 CAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGGCCGCAA 767
consensus_11469#3 CAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGG-AAGACCAAGTCCGCAA 139
consensus_11469#0 CAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGG-AAGACCAAGTCCGCAA 1729
consensus_11469#1 TATGACAAC-TTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCT 1232
* ** *** * * ** * * **** * * * *
consensus_11469#2 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATCTCAACGTGATGAGTTGA 826
consensus_11469#3 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATTTCAACGGGATGAGTTGA 198
consensus_11469#0 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATCTCAACGTGATGAGTTGA 1788
consensus_11469#1 TCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTT 1292
** * ** * * * *** ** * * * * * **** *
consensus_11469#2 ACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAA 886
consensus_11469#3 ACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAA 258
consensus_11469#0 ACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAA 1848
consensus_11469#1 TTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACA 1352
* * * * *** * * * ** * * * * *
consensus_11469#2 AACTTGATGAGCAAATGGC-CATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 945
consensus_11469#3 AACTTGATGGGCAAATGGC-CATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCA 317
consensus_11469#0 AACTTGATGAGCAAATGGC-CATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 1907
consensus_11469#1 AGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 1412
* *** * ********* ** ** ** * ** ****** ** ******
consensus_11469#2 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTAT 1005
consensus_11469#3 TCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTT 377
consensus_11469#0 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTAT 1967
consensus_11469#1 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTAT 1472
***** **** *********** ** ******************** * ******* * *
consensus_11469#2 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 1065
consensus_11469#3 TTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTT 437
consensus_11469#0 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 2027
consensus_11469#1 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 1532
********* *************** ****** *********************** **
consensus_11469#2 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 1125
consensus_11469#3 TAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAA 497
consensus_11469#0 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 2087
consensus_11469#1 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 1592
******* * *************** ************************** * * ***
consensus_11469#2 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 1185
consensus_11469#3 ATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATT 557
consensus_11469#0 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 2147
consensus_11469#1 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 1652
*********** ******** ************************** ************
consensus_11469#2 GGAATATCATTGTTCCTTAATTTGGTTTAAAAAA-------------------------- 1219
consensus_11469#3 TCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGG 617
consensus_11469#0 TCAATATCATTGTTCCTGA----------------------------------------- 2166
consensus_11469#1 TCAATATCATTGTTCCTT------------------------------------------ 1670
** ************
consensus_11469#2 --------------------------------------------------------
consensus_11469#3 AGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG 673
consensus_11469#0 --------------------------------------------------------
consensus_11469#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||