These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTAGAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATTTATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT] [+] EMBL AK062825 [GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTAGAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATTTATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT] consensusID : consensus_1147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [CCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGATCTATGTTGATTGTTGGACTCTCTATGTTGTAATATTTGCACATTTCGAACTTGCTTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATTTCTATCGCATTTTCAAAAAAAAAAAAAA] [+] EMBL CA754465 [CCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGATCTATGTTGATTGTTGGACTCTCTATGTTGTAATATTTGCACATTTCGAACTTGCTTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATTTCTATCGCATTTTCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1147#0 GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCC 60 consensus_1147#1 -------------------------------------------------CCGGCGCCTCC 11 *********** consensus_1147#0 TCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTC 120 consensus_1147#1 TCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTC 71 ************************************************************ consensus_1147#0 TGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCG 180 consensus_1147#1 TGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCG 131 ************************************************************ consensus_1147#0 CGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCC 240 consensus_1147#1 CGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCC 191 ************************************************************ consensus_1147#0 TCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCG 300 consensus_1147#1 TCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCG 251 ************************************************************ consensus_1147#0 CCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCC 360 consensus_1147#1 CCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCC 311 ************************************************************ consensus_1147#0 ACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTA 420 consensus_1147#1 ACTAGCCAGGATCTATGTTGATTGTTGGACT------CTCTATGTTGTAAT-----ATTT 360 ********** * * *** * *** ** ** * *** *** consensus_1147#0 GAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATT 480 consensus_1147#1 GCACATTT-CGAACTTGC--TTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATT 417 * * **** *** *** ** * ** * * ** ** ** * *** consensus_1147#0 TATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT 531 consensus_1147#1 TCTATCGCATTTTCAAAAAAAAAAAAAA----------------------- 445 * ** ** ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||