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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1071 fasta sequence
[ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGGAGCAGGGCGCGGCGGCCGGACAAGCCGTGCTGCCCGGAGCTGGCCGGGCTGGTGGAGTCCAACCCGGTGTGCCTCTGCGAGCTCCTCTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTACTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTG-CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAGATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAAAGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA]
[+] EMBL AK069135 [ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGGAGCAGGGCGCGGCGGCCGGACAAGCCGTGCTGCCCGGAGCTGGCCGGGCTGGTGGAGTCCAACCCGGTGTGCCTCTGCGAGCTCCTCTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTACTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTG CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAGATACTAGTACTTTTTCTGGTTT ]
[+] EMBL AU166267 [ CGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGNAG ]
[+] EMBL C71752 [ CTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCNNNAGAGAGCGCGCCATGGCGGCGCANGGNCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCAGCGACGA GGCGGAGGCGCAGTCGGCG CGTCGG GGCGCGNGNGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTAACGGCGCTGCTGAACATNTCG ]
[+] EMBL AU093183 [ GTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGA GGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTC CCGTCGGCGTCGCCATTG CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTNNCTATAAAATTCCTTTTGATNTNAAAaanaaa ]
[+] EMBL AU166268 [ GTCGCCGTCGGCGTCGCCATTGCCCGCCGCCCCCGTCGTNG CGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAAAGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA]
consensusID : consensus_11470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 881 fasta sequence
[AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACAGGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCACATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCCCTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACCGGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGGCATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGTCCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAGGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGAT-TCCATGACA-T-TTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATA-CTAGTACTTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA]
[-] EMBL AW155205 [AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACAGGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCACATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCCCTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACCGGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGGCATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGTCCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAGGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGAT TCCATGACA T TTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATA CTAGTACTTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA]
[+] EMBL BI812633 [ tgGCTGGATGTCCAGGACAGTGTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACCTAGTACTTTTTCTGGTTTTATGTTGTCAAAA ]
[+] EMBL C98458 [ TATACTTATCTTGTTCATATGTTTGATGTGATGACTCACANGTCGTCATNTAACCACCTAGTGTGGTATGTGAGAAATA CTAGTACTTTTTCTGGTTTaaaanaaaa ]
consensusID : consensus_11470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCANGGCGGATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTNGCGGCGGCGCGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGNCTGNCTGANGTACGTGCAGAACGGGNGCAGNNCGCGGCGGCCGNACAAGNCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCCAAANCGNGTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA]
[+] EMBL OS0769A [ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCANGGCGGATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTNGCGGCGGCGCGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGNCTGNCTGANGTACGTGCAGAACGGGNGCAGNNCGCGGCGGCCGNACAAGNCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCCAAANCGNGTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11470#0 ------------------------------------------------------------
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACA 60
consensus_11470#0 ------------------------------------------------------------
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 GGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCAC 120
consensus_11470#0 ------------------------------------------------------------
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCC 180
consensus_11470#0 ------------------------------------------------------------
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 CTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACC 240
consensus_11470#0 ------------------------------------------------------------
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 GGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGG 300
consensus_11470#0 -------------------------ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCT 35
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 CATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGT 360
consensus_11470#0 CTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCA 95
consensus_11470#2 ---------------------ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCA 39
consensus_11470#1 CCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGC-CCA 419
** ** ** ** ** * *** ** ***
consensus_11470#0 TGGCGGCGCAGCGGCG-GTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTA 154
consensus_11470#2 TGGCGGCGCANGGCGG-ATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTA 98
consensus_11470#1 CAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAG 479
* * * * *** *** * ** *** * *** ** *
consensus_11470#0 GT-ACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGC 213
consensus_11470#2 GT-ACTACTNGCGGCGGCG----------------------------------------- 116
consensus_11470#1 GCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCC 539
* * * **** *
consensus_11470#0 GCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTC 273
consensus_11470#2 --CGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTC 174
consensus_11470#1 GCCGCCGTCGTCGTCGCCGGGAT--GTTTAGAATCGTTTGATTGATCCGCTCAACTAGCT 597
** * * ** ***** * ** * *** * * *** *** *
consensus_11470#0 GG-ACTGCCTGACGTACGTGCAGA-----ACGGGAGCAGGGCGCGGCGGCCGGA--CAAG 325
consensus_11470#2 GG-NCTGNCTGANGTACGTGCAGA-----ACGGGNGCAGNNCGCGGCGGCCGNA--CAAG 226
consensus_11470#1 ATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAA 657
* *** * ** * * * * * * * * ***
consensus_11470#0 --CCGTGCTGCCCGGAGCTGGCCGGGCTG---GTGGAGTCC------------AACCCGG 368
consensus_11470#2 --NCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCC------------AAANCGN 272
consensus_11470#1 TTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGC 717
* * * ** * * * * ** *
consensus_11470#0 -TGTGCCTCTGCGAGCTCCT-CTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTA 426
consensus_11470#2 GTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA------------------------ 308
consensus_11470#1 TGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGA 777
* * * * * * *
consensus_11470#0 CTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTG 486
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 TGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACTAGTAC 837
consensus_11470#0 CGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGT 546
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 TTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA---------------- 881
consensus_11470#0 CTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTC 606
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 GACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGC 666
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 CGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTG 726
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 ATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGT 786
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 CCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATT 846
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 CCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACT 906
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 TATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGG 966
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 TATGTGAGAGATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAA 1026
consensus_11470#2 ------------------------------------------------------------
consensus_11470#1 ------------------------------------------------------------
consensus_11470#0 AGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA 1071
consensus_11470#2 ---------------------------------------------
consensus_11470#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||