These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1071 fasta sequence [ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGGAGCAGGGCGCGGCGGCCGGACAAGCCGTGCTGCCCGGAGCTGGCCGGGCTGGTGGAGTCCAACCCGGTGTGCCTCTGCGAGCTCCTCTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTACTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTG-CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAGATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAAAGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA] [+] EMBL AK069135 [ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGGAGCAGGGCGCGGCGGCCGGACAAGCCGTGCTGCCCGGAGCTGGCCGGGCTGGTGGAGTCCAACCCGGTGTGCCTCTGCGAGCTCCTCTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTACTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTG CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAGATACTAGTACTTTTTCTGGTTT ] [+] EMBL AU166267 [ CGAATTCATTTTCGATTCCTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCAGCGGCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGCGCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGACTGCCTGACGTACGTGCAGAACGGNAG ] [+] EMBL C71752 [ CTCTCCTCTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCNNNAGAGAGCGCGCCATGGCGGCGCANGGNCGGTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTGGCGGCGTCGGCAGCGACGA GGCGGAGGCGCAGTCGGCG CGTCGG GGCGCGNGNGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTAACGGCGCTGCTGAACATNTCG ] [+] EMBL AU093183 [ GTCTCCACCCCTCCCGTCTCCACCTGCGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGA GGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTC CCGTCGGCGTCGCCATTG CCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTNNCTATAAAATTCCTTTTGATNTNAAAaanaaa ] [+] EMBL AU166268 [ GTCGCCGTCGGCGTCGCCATTGCCCGCCGCCCCCGTCGTNG CGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAAAGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA] consensusID : consensus_11470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 881 fasta sequence [AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACAGGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCACATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCCCTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACCGGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGGCATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGTCCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAGGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGAT-TCCATGACA-T-TTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATA-CTAGTACTTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA] [-] EMBL AW155205 [AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACAGGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCACATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCCCTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACCGGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGGCATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGTCCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAGGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTGATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGCTGGAT TCCATGACA T TTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATA CTAGTACTTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA] [+] EMBL BI812633 [ tgGCTGGATGTCCAGGACAGTGTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACCTAGTACTTTTTCTGGTTTTATGTTGTCAAAA ] [+] EMBL C98458 [ TATACTTATCTTGTTCATATGTTTGATGTGATGACTCACANGTCGTCATNTAACCACCTAGTGTGGTATGTGAGAAATA CTAGTACTTTTTCTGGTTTaaaanaaaa ] consensusID : consensus_11470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCANGGCGGATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTNGCGGCGGCGCGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGNCTGNCTGANGTACGTGCAGAACGGGNGCAGNNCGCGGCGGCCGNACAAGNCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCCAAANCGNGTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA] [+] EMBL OS0769A [ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCATGGCGGCGCANGGCGGATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTAGTACTACTNGCGGCGGCGCGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTCGGNCTGNCTGANGTACGTGCAGAACGGGNGCAGNNCGCGGCGGCCGNACAAGNCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCCAAANCGNGTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11470#0 ------------------------------------------------------------ consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 AGTTTATAATTATTACCTAATTTTGACTTGATCAATGAATGTTACTCAAGCATTGTGACA 60 consensus_11470#0 ------------------------------------------------------------ consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 GGACTACTCTAAAATATCATTTATCCATTCACACTGTGTCAATCTACTCTATCAGATCAC 120 consensus_11470#0 ------------------------------------------------------------ consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ATGATGAGACGTCCAATCGTCGCACAGGCAGATGTCAGTGCTGCACATGTAACTGCAGCC 180 consensus_11470#0 ------------------------------------------------------------ consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 CTAAGACTCAACCGACAGGCCAGGGCGACAACGTATGCAGAATGGCTGCTGGAATCCACC 240 consensus_11470#0 ------------------------------------------------------------ consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 GGGGCTATGAAGTCTTTTGGTGCCGAGATCTACGGCATGCCGTGGATACTCCGGGCCTGG 300 consensus_11470#0 -------------------------ACGACGCCTCCGAATTCATTTTCGATTCCTCTCCT 35 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 CATCCCGCAATTGCCGGTAATCACCCTCCCGTTTCCCCTGGCAAGCCTTGTAATCAATGT 360 consensus_11470#0 CTCCTCTCCTTCCACCGCCTAACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCA 95 consensus_11470#2 ---------------------ACGAACCACTCGCCATCAAAGCCCCCAGAGAGCGCGCCA 39 consensus_11470#1 CCAATGGGCCCACGCCGTCGCCTTCGCCGGCAGCAGTCTCGCCCTCCGGTGAGGGC-CCA 419 ** ** ** ** ** * *** ** *** consensus_11470#0 TGGCGGCGCAGCGGCG-GTGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTA 154 consensus_11470#2 TGGCGGCGCANGGCGG-ATGGCCGACGTCGACGCTGGCGGCGGTGGCAGTCGCCGTAGTA 98 consensus_11470#1 CAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTCGACGGNGAACGTCACCCCAAAG 479 * * * * *** *** * ** *** * *** ** * consensus_11470#0 GT-ACTACTGGCGGCGTCGGCGGCGACGACGGCGGAGGCGCAGTCGGCGCCGGCGGCGGC 213 consensus_11470#2 GT-ACTACTNGCGGCGGCG----------------------------------------- 116 consensus_11470#1 GCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGCCGTCGGCGTCGCCATTGCCGCC 539 * * * **** * consensus_11470#0 GCCGGGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTC 273 consensus_11470#2 --CGNGGCCAGCGGGGCCGGTGCTGGACCAGGCGTGCCTGACGGCGCTGCTGAACATGTC 174 consensus_11470#1 GCCGCCGTCGTCGTCGCCGGGAT--GTTTAGAATCGTTTGATTGATCCGCTCAACTAGCT 597 ** * * ** ***** * ** * *** * * *** *** * consensus_11470#0 GG-ACTGCCTGACGTACGTGCAGA-----ACGGGAGCAGGGCGCGGCGGCCGGA--CAAG 325 consensus_11470#2 GG-NCTGNCTGANGTACGTGCAGA-----ACGGGNGCAGNNCGCGGCGGCCGNA--CAAG 226 consensus_11470#1 ATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGTCCTTGCTGATCATAATCAAA 657 * *** * ** * * * * * * * * *** consensus_11470#0 --CCGTGCTGCCCGGAGCTGGCCGGGCTG---GTGGAGTCC------------AACCCGG 368 consensus_11470#2 --NCNTGCTGNCCGGAGCTNNAACGGANATAAGTGGAGTCC------------AAANCGN 272 consensus_11470#1 TTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATTCCTTTTGATGTAAAACTTGC 717 * * * ** * * * * ** * consensus_11470#0 -TGTGCCTCTGCGAGCTCCT-CTCCGGCGCCGGCGACTCCTACGGCATCGCCGTCGACTA 426 consensus_11470#2 GTGTNCCTATNAGTGNTACTGTTTNAAAGANAGAGA------------------------ 308 consensus_11470#1 TGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACTTATCTTGTTCATATGTTTGA 777 * * * * * * * consensus_11470#0 CTCCCGCGCCCTCGCCCTCCCCGCCATCTGCCGCGTCTCCACCCCTCCCGTCTCCACCTG 486 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 TGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGGTATGTGAGAAATACTAGTAC 837 consensus_11470#0 CGCAGCCTTTGGATTCAATGTTCCAATGGGCCCAACGCCGTCGCCTTCGCCGGCAGCCGT 546 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 TTTTTCTGGTTTTATGTTGTCAAAAAAAAAAACAAAAAAAAAAA---------------- 881 consensus_11470#0 CTCGCCCTCCGGTGAGGGCCCACAGTTCCCTGGGACCTCACCGTTCGCCTCGCCGCCGTC 606 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 GACGGCGACGCCGTCCACCAACGCCGCCGCCGCCGGCCGCTCCGGCGACCACCTCGTCGC 666 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 CGTCGGCGTCGCCATTGCCGCCGCCGCCGTCGTCGTCGCCGGGATGTTTAGAATCGTTTG 726 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 ATTGATCCGCTCAACTAGCTATCATTTTCTGGGGGTGATGTGGCTGTTTGTTTGTATGGT 786 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 CCTTGCTGATCATAATCAAATTCCTTTTTATTTAAAGACGTATTAAGTAACTATAAAATT 846 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 CCTTTTGATGTAAAACTTGCTGGATTCCATGACATTTGTCCTTGCAAGGACGTATATACT 906 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 TATCTTGTTCATATGTTTGATGTGATGACTCACAAGTCGTCATGTAACCACCTAGTGTGG 966 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 TATGTGAGAGATACTAGTACTTTTTCTGGTTTTATGTTGTCACAAGAACAGCATGAGCAA 1026 consensus_11470#2 ------------------------------------------------------------ consensus_11470#1 ------------------------------------------------------------ consensus_11470#0 AGTTCAAAAAAAAAAAGAGAACAGCATGATGATAAGAAAAAAAAA 1071 consensus_11470#2 --------------------------------------------- consensus_11470#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||