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Oryza sativa
cluster # 11479 cluster # 11479       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11479#0 length = 2642 sequences # 7  
consensus_11479#1 length = 178 sequences # 2  

consensusID : consensus_11479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2642
fasta sequence
                              [TAATTGATTGATAAACCCTACTGCTTCTCGCCGCCGCCGCCGACGAGGACGCCGGTGGGATGGGGGGCGGGCCGAGGACGTTCCCGGGCGGGCTGTCGAAGTGGCAGCACAAGCGGATGCACGAGAAGCTCGCGAGGCACAAGGAGCGGGGGCTCCTCCGCCACGAGAAGCAGCTCTACCTCGCCCGCCTCCGCTCCGAGATCCGCGCCTCCCGCCTGCCCGCCGCCGGCGCCTCCCCTCCCGACGACGGCGACGGGCCCACCTCCTCGCGCGCCCACATCCGCGCCCTCGCCGACCGCTTCCTCTTGCCCGGCGCCGAGGATCTCTGGAACGAAGACGACGGGCCCATCCACCGCGCCGACCGGCCGCGGCCGCCGAGGAGGATCGTCTCCGTTGGCGGGAATGGCGGCGACCGCCGTAAGTTGGACTCTACAAAGCAGGAGCTACCGAGGGGTGGGAAGGAGCCGCGTCTGGCTGCGTTCAATCCTAGGAGGGATTTCCAGACGGCCGCGCCCTGGTGGTGGCAATGGAGCTCGTCTTCCGCCATTCCTTCGCGAACAAAGGAGGCATCCTTCTGTTTCTTCGGTCCCAAGAGATCCTACTCAGTGATGCCTCTGTTCCAGGCGCATCAGGAGTCCAGTGGTACATCGATGGTGCCGCTGATTGCTAGAGGTCTTGCCAGTGCTCGGATTGCTCCCTCGCAGTTGAATGGAGAGAGGTTCTACTCGTTCGCAGCAGGGCGATTTGGCAGGAAATTTAGGCCAGACTCCTCAGATGAGGATGATGAGGATATATCAACTGCGAAGAAGGATATGAGGTTTGCGAGGTTTGGAGCATCCAGTGAGGAGGAATCAGGATACGATGAATTGGAGGCGAGAAGTGCCATCAGGAAGAAATGGAGCAGTGCTGCTTTGAGGAACTGTGATATGAAGAAGGAGAGGAGAGCGCTCAAGTCCTATGAGGAAGAAAACAACGATCTCGCTGGTAGCTTCCGAGAGCTGCGAGAGGAGATAAAGAACAGGGAAGTGTTGGGTGCTGAGCGGAGGCGTTACGAGTCGAGGGGCGAATCTTTGTTTACCAATAAAAGATTTGAGGAATGTGGTATCTCTCCCCTAACAGTAAAAGCACTCACTGATGCTGGATATGTACAGACTACCGTTGTGCAGGAAACAGCACTTCCTATGTGTCTTGAAGGCAAAGATGTTCTTGTCAAGGCTAAAACTGGAACTGGCAAAAGTGCAGCTTTTCTGCTCCCTGCAATTGAATCAGTCTTGAATGCTATGAAGAGCCATACAAATCATCGAGTGTCTCCAATATTTTCGCTTATCCTTTGCCCTACAAGAGAGCTTGCCATCCAGCTCACAGCTGAGGCAAATGTTCTGTTGAAGTACCATCAAGGAATTGGTGTTCAATCTCTTATTGGTGGCACTAGATTCAAGCTAGATCAAAGACGTTTAGAATCTGATCCATGCCAGATTTTAGTTGCTACACCTGGTAGACTGCTCGATCACATTGAGAACAAATCTTCATTCTCTGTTCGCTTGATGGGATTGAAGTTGCTTGTATTGGATGAAGCTGATCATTTGCTAGATTTGGGTTTCCGTACAGACATTGAAAAGATTGTTGATAGTTTGCCACGTCAAAGACAGACACTACTATTTTCTGCTACAATCCCAAAGGAGGTTCGAAGGGTTTCACAGCTAGTTTTAAAAAGGGATCATGTTTTTGTTGATACAGTGGGCTTGGGAGCTGTTGAAACTCCTACTAAGGTGGAGCAGTTGTATCTCGTTATGCCACATGAGCTGCATTTTCATATGGTTTATCGCCTTCTCCGAGAACATATTGATCAGGAAGTGGACTATAAGGTGATTGTTTTCTGCACAACTGCCATGGTGACTGAATTTATGTATATAATGCTTCGAGATTTGAAGCTAAATGTCCGAGAAATCCATTCAAGAAAGCCTCAGCTCTATAGAACTCGGATATCAGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAACACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGG-ACCGGAAGAGAAGGTAAATCTGGTAAAGGGATTCTTTTGCTTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGCAGAAGTCTCAAACA-CCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAAAGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATTCAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTAAATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCCTTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTA-GTATCTGTGCTGAA-CAATTATGGAGT-AATATATATTTTTAAAATTTCTGAAAGGAGGCAAAGCCCTCCGTATAGGATGTGTCA]

[+] EMBL AK101090             [TAATTGATTGATAAACCCTACTGCTTCTCGCCGCCGCCGCCGACGAGGACGCCGGTGGGATGGGGGGCGGGCCGAGGACGTTCCCGGGCGGGCTGTCGAAGTGGCAGCACAAGCGGATGCACGAGAAGCTCGCGAGGCACAAGGAGCGGGGGCTCCTCCGCCACGAGAAGCAGCTCTACCTCGCCCGCCTCCGCTCCGAGATCCGCGCCTCCCGCCTGCCCGCCGCCGGCGCCTCCCCTCCCGACGACGGCGACGGGCCCACCTCCTCGCGCGCCCACATCCGCGCCCTCGCCGACCGCTTCCTCTTGCCCGGCGCCGAGGATCTCTGGAACGAAGACGACGGGCCCATCCACCGCGCCGACCGGCCGCGGCCGCCGAGGAGGATCGTCTCCGTTGGCGGGAATGGCGGCGACCGCCGTAAGTTGGACTCTACAAAGCAGGAGCTACCGAGGGGTGGGAAGGAGCCGCGTCTGGCTGCGTTCAATCCTAGGAGGGATTTCCAGACGGCCGCGCCCTGGTGGTGGCAATGGAGCTCGTCTTCCGCCATTCCTTCGCGAACAAAGGAGGCATCCTTCTGTTTCTTCGGTCCCAAGAGATCCTACTCAGTGATGCCTCTGTTCCAGGCGCATCAGGAGTCCAGTGGTACATCGATGGTGCCGCTGATTGCTAGAGGTCTTGCCAGTGCTCGGATTGCTCCCTCGCAGTTGAATGGAGAGAGGTTCTACTCGTTCGCAGCAGGGCGATTTGGCAGGAAATTTAGGCCAGACTCCTCAGATGAGGATGATGAGGATATATCAACTGCGAAGAAGGATATGAGGTTTGCGAGGTTTGGAGCATCCAGTGAGGAGGAATCAGGATACGATGAATTGGAGGCGAGAAGTGCCATCAGGAAGAAATGGAGCAGTGCTGCTTTGAGGAACTGTGATATGAAGAAGGAGAGGAGAGCGCTCAAGTCCTATGAGGAAGAAAACAACGATCTCGCTGGTAGCTTCCGAGAGCTGCGAGAGGAGATAAAGAACAGGGAAGTGTTGGGTGCTGAGCGGAGGCGTTACGAGTCGAGGGGCGAATCTTTGTTTACCAATAAAAGATTTGAGGAATGTGGTATCTCTCCCCTAACAGTAAAAGCACTCACTGATGCTGGATATGTACAGACTACCGTTGTGCAGGAAACAGCACTTCCTATGTGTCTTGAAGGCAAAGATGTTCTTGTCAAGGCTAAAACTGGAACTGGCAAAAGTGCAGCTTTTCTGCTCCCTGCAATTGAATCAGTCTTGAATGCTATGAAGAGCCATACAAATCATCGAGTGTCTCCAATATTTTCGCTTATCCTTTGCCCTACAAGAGAGCTTGCCATCCAGCTCACAGCTGAGGCAAATGTTCTGTTGAAGTACCATCAAGGAATTGGTGTTCAATCTCTTATTGGTGGCACTAGATTCAAGCTAGATCAAAGACGTTTAGAATCTGATCCATGCCAGATTTTAGTTGCTACACCTGGTAGACTGCTCGATCACATTGAGAACAAATCTTCATTCTCTGTTCGCTTGATGGGATTGAAGTTGCTTGTATTGGATGAAGCTGATCATTTGCTAGATTTGGGTTTCCGTACAGACATTGAAAAGATTGTTGATAGTTTGCCACGTCAAAGACAGACACTACTATTTTCTGCTACAATCCCAAAGGAGGTTCGAAGGGTTTCACAGCTAGTTTTAAAAAGGGATCATGTTTTTGTTGATACAGTGGGCTTGGGAGCTGTTGAAACTCCTACTAAGGTGGAGCAGTTGTATCTCGTTATGCCACATGAGCTGCATTTTCATATGGTTTATCGCCTTCTCCGAGAACATATTGATCAGGAAGTGGACTATAAGGTGATTGTTTTCTGCACAACTGCCATGGTGACTGAATTTATGTATATAATGCTTCGAGATTTGAAGCTAAATGTCCGAGAAATCCATTCAAGAAAGCCTCAGCTCTATAGAACTCGGATATCAGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAACACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGG ACCGGAAGAGAAGGTAAATCTGGTAAAGGGATTCTTTTG TTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGCAGAAGTCTCAAACA CCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAAAGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATTCAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTAAATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCCTTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTA GTATCTGTGCTGAA CAATTATGGAGT AATATATATTTTTAAAATTTCTGAAAGGAGGCAAAGCCCTCCGTATAGGATGTGTCA]
[+] EMBL CB636415             [                                                    CGGTGGGATGGGGGGCGGGCCGAGGACGTTCCCGGGCGGGCTGTCGAAGTGGCAGCACAAGCGGATGCACGAGAAGCTCGCGAGGCACAAGGAGCGGGGGCTCCTCCGCCACGAGAAGCAGCTCTACCTCGCCCGCCTCCGCTCCGAGATCCGCGCCTCCCGCCTGCCCGCCGCCGGCGCCTCCCCTCCCGACGACGGCGACGGGCCCACCTCCTCGCGCGCCCACATCCGCGCCCTCGCCGACCGCTTCCTCTTGCCCGGCGCCGAGGATCTCTGGAACGAAGACGACGGGCCCATCCACCGCGCCGACCGGCCGCGGCCGCCGAGGAGGATCGTCTCCGTTGGCGGGAATGGCGGCGACCGCCGTAAGTTGGACTCTACAAAGCAGGAGCTACCGAGGGGTGGGAAGGAGCCGCGTCTGGCTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB635948             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGTTCGGAGCATCCAGTGAGGAGGAATCAGGATACGATGAATTGGAGGCGAGAAGTGCCATCAGGAAGAAATGGAGCAGTGCTGCTTTGAGGAACTGTGATATGAAGAAGGAGAGGAGAGCGCTCAAGTCCTATGAGGAAGAAAACAACGATCTCGCTGGTAGCTTCCGAGAGCTGCGAGAGGAGATAAAGAACAGGGAAGTGTTGGGTGCTGAGCGGAGGCGTTACGAGTCGAGGGGCGAATCTTTGTTTACCAATAAAAGATTTGAGGAATGTGGTATCTCTCCCCTAACAGTAAAAGCACTCACTGATGCTGGATATGTACAGACTACCGTTGTGCAGGAAACAGCACTTCCTATGTGTCTTGAAGGCAAAGATGTTCTTGTCAAGGCTAAAACTGGAACTGGCAAAAGTGCAGCTTTTCTGCTCCCTGCAATTGAATCAGTCTTGAATGCTATGAAGAGCCATACAAATCATCGAGTGTCTCCAATATTTTCGCTTATCCTTTGCCCTACAAGAGAGCTTGCCATCCAGCTCACAGCTGAGGCAAATGTTCTGTTGAAGTACCATCAAGGAATTGGTGTTCAATCTCTTATTGGTGGCACTAGATTCAAGCTAGATCAAAGACGTTTAGAATCTGATCCATGCCAGATTTTAGTTGCTACACCTGGTAGACTGCTCGATCACATTGAGAACAAATCTTCATTCTCTGTTCGCTTGATGGGATTGAAGTTGCTTGTATTGGATGAAGCTGATCATTTGCTAGATTTGGGTTTCCGTACAGACATTGAAAAGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA923297             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAAAGATTGTTGATAGTTTGCCACGTCAAAGACAGACACTACTATTTTCTGCTACAATCCCAAAGGAGGTTCGAAGGGTTTCACAGCTAGTTTTAAAAAGGGATCATGTTTTTGTTGATACAGTGGGCTTGGGAGCTGTTGAAACTCCTACTAAGGTGGAGCAGTTGTATCTCGTTATGCCACATGAGCTGCATTTTCATATGGTTTATCGCCTTCTCCGAGAACATATTGATCAGGAAGTGGACTATAAGGTGATTGTTTTCTGCACAACTGCCATGGTGACTGAATTTATGTATATAATGCTTCGAGATTTGAAGCTAAATGTCCGAGAAATCCATTCAAGAAAGCCTCAGCTCTATAGAACTCGGATATCAGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAACACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGGAACCGAGAGAGAAGGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB636416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAACACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGG ACCGGAAGAGAAGGTAAATCTGGTAAAGGGATTCTTTTGCTTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGCAGAAGTCTCAAACA CCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAAAGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATTCAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTAAATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCCTTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTA GTATCTGTGCTGAA CAATTATG                                                              ]
[+] EMBL CA764376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aggggCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAACACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGG ACCGGAAGAGAAGGTAAATCTGGTAAAGGGATTCTTTTGCTTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGCAGAAGTCTCAAACA CCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAAAGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATTCAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGCAAATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCCTTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTA GTATCTGTGCTGAA CAATTATGGAGT AATATATATTTTTAAAANTTCTGAAAGGAGGCAAAGCCCTNCGTATAG         ]
[-] EMBL CF331595             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATAGAGAGCACTACATCCATCGACTTGGAAGG ACCGGAAGAGAAGGTAAATCTGGTAAAGGGATTCTTTTGCTTGCGCCATGGG  GAGTATTTCTTAAATGAGATACATGATCTCCCGGTGCAGAAGTCTCAAACACCCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAAAGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATTCAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTAAATCCATCGGTTTGGAAAAGCCTCCAGCACTGCACAGGAAAACTGCTCTGAAGATGGGCCTTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTAGGTATCTGTGCTGAACCAATTATGGAGTNAATATATATTTTTAAAATTTCTGAAAGGAGGCAAAGCCCTCCGTAaaaaa       ]


>consensus_11479#0 TAATTGATTGATAAACCCTACTGCTTCTCGCCGCCGCCGCCGACGAGGACGCCGGTGGGA TGGGGGGCGGGCCGAGGACGTTCCCGGGCGGGCTGTCGAAGTGGCAGCACAAGCGGATGC ACGAGAAGCTCGCGAGGCACAAGGAGCGGGGGCTCCTCCGCCACGAGAAGCAGCTCTACC TCGCCCGCCTCCGCTCCGAGATCCGCGCCTCCCGCCTGCCCGCCGCCGGCGCCTCCCCTC CCGACGACGGCGACGGGCCCACCTCCTCGCGCGCCCACATCCGCGCCCTCGCCGACCGCT TCCTCTTGCCCGGCGCCGAGGATCTCTGGAACGAAGACGACGGGCCCATCCACCGCGCCG ACCGGCCGCGGCCGCCGAGGAGGATCGTCTCCGTTGGCGGGAATGGCGGCGACCGCCGTA AGTTGGACTCTACAAAGCAGGAGCTACCGAGGGGTGGGAAGGAGCCGCGTCTGGCTGCGT TCAATCCTAGGAGGGATTTCCAGACGGCCGCGCCCTGGTGGTGGCAATGGAGCTCGTCTT CCGCCATTCCTTCGCGAACAAAGGAGGCATCCTTCTGTTTCTTCGGTCCCAAGAGATCCT ACTCAGTGATGCCTCTGTTCCAGGCGCATCAGGAGTCCAGTGGTACATCGATGGTGCCGC TGATTGCTAGAGGTCTTGCCAGTGCTCGGATTGCTCCCTCGCAGTTGAATGGAGAGAGGT TCTACTCGTTCGCAGCAGGGCGATTTGGCAGGAAATTTAGGCCAGACTCCTCAGATGAGG ATGATGAGGATATATCAACTGCGAAGAAGGATATGAGGTTTGCGAGGTTTGGAGCATCCA GTGAGGAGGAATCAGGATACGATGAATTGGAGGCGAGAAGTGCCATCAGGAAGAAATGGA GCAGTGCTGCTTTGAGGAACTGTGATATGAAGAAGGAGAGGAGAGCGCTCAAGTCCTATG AGGAAGAAAACAACGATCTCGCTGGTAGCTTCCGAGAGCTGCGAGAGGAGATAAAGAACA GGGAAGTGTTGGGTGCTGAGCGGAGGCGTTACGAGTCGAGGGGCGAATCTTTGTTTACCA ATAAAAGATTTGAGGAATGTGGTATCTCTCCCCTAACAGTAAAAGCACTCACTGATGCTG GATATGTACAGACTACCGTTGTGCAGGAAACAGCACTTCCTATGTGTCTTGAAGGCAAAG ATGTTCTTGTCAAGGCTAAAACTGGAACTGGCAAAAGTGCAGCTTTTCTGCTCCCTGCAA TTGAATCAGTCTTGAATGCTATGAAGAGCCATACAAATCATCGAGTGTCTCCAATATTTT CGCTTATCCTTTGCCCTACAAGAGAGCTTGCCATCCAGCTCACAGCTGAGGCAAATGTTC TGTTGAAGTACCATCAAGGAATTGGTGTTCAATCTCTTATTGGTGGCACTAGATTCAAGC TAGATCAAAGACGTTTAGAATCTGATCCATGCCAGATTTTAGTTGCTACACCTGGTAGAC TGCTCGATCACATTGAGAACAAATCTTCATTCTCTGTTCGCTTGATGGGATTGAAGTTGC TTGTATTGGATGAAGCTGATCATTTGCTAGATTTGGGTTTCCGTACAGACATTGAAAAGA TTGTTGATAGTTTGCCACGTCAAAGACAGACACTACTATTTTCTGCTACAATCCCAAAGG AGGTTCGAAGGGTTTCACAGCTAGTTTTAAAAAGGGATCATGTTTTTGTTGATACAGTGG GCTTGGGAGCTGTTGAAACTCCTACTAAGGTGGAGCAGTTGTATCTCGTTATGCCACATG AGCTGCATTTTCATATGGTTTATCGCCTTCTCCGAGAACATATTGATCAGGAAGTGGACT ATAAGGTGATTGTTTTCTGCACAACTGCCATGGTGACTGAATTTATGTATATAATGCTTC GAGATTTGAAGCTAAATGTCCGAGAAATCCATTCAAGAAAGCCTCAGCTCTATAGAACTC GGATATCAGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAA CACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATA GAGAGCACTACATCCATCGACTTGGAAGGACCGGAAGAGAAGGTAAATCTGGTAAAGGGA TTCTTTTGCTTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGC AGAAGTCTCAAACACCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAA AGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATT CAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTA AATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCC TTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTT TACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTAGTATCTGTGCTGAACAATTAT GGAGTAATATATATTTTTAAAATTTCTGAAAGGAGGCAAAGCCCTCCGTATAGGATGTGT CA



consensusID : consensus_11479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 178
fasta sequence
                              [GCGATGGCATTACAGAACCTGTTCGCTAGGTCAACAAGCATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTTAGTGAGAGAGTAGTAGTATCTGTCATCTTTCAGTAAAAAAAAAAAAAAAAAACAGAGCGGC]

[+] EMBL BI305485             [GCGATGGCATTACAGAACCTGTTCGCTAGGTCAACAAGCATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTTAGTGAGAGAGTAGTAGTATCTGTCATCTTTCAGTAAAAAAAAAAAAAAAAAACAGAGCGGC]
[+] EMBL CB966569             [          TACAGAACCTGTTCGCTAGGTCAACAAGCATGTACCTGGGATTCGAATCAGGAAATAGCAA TGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTTAGTGAGAGAGTAGTAGTATCTGTCATCTTTCAGTAAAAAAAAAAAAAAAAAA         ]


>consensus_11479#1 GCGATGGCATTACAGAACCTGTTCGCTAGGTCAACAAGCATGTACCTGGGATTCGAATCA GGAAATAGCAATTGCATTTCTTTCCTTTTCTTTTACTGAAAGATGGCAGATAGATTTAGT GAGAGAGTAGTAGTATCTGTCATCTTTCAGTAAAAAAAAAAAAAAAAAACAGAGCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11479#0      TAATTGATTGATAAACCCTACTGCTTCTCGCCGCCGCCGCCGACGAGGACGCCGGTGGGA 60
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TGGGGGGCGGGCCGAGGACGTTCCCGGGCGGGCTGTCGAAGTGGCAGCACAAGCGGATGC 120
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ACGAGAAGCTCGCGAGGCACAAGGAGCGGGGGCTCCTCCGCCACGAGAAGCAGCTCTACC 180
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TCGCCCGCCTCCGCTCCGAGATCCGCGCCTCCCGCCTGCCCGCCGCCGGCGCCTCCCCTC 240
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      CCGACGACGGCGACGGGCCCACCTCCTCGCGCGCCCACATCCGCGCCCTCGCCGACCGCT 300
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TCCTCTTGCCCGGCGCCGAGGATCTCTGGAACGAAGACGACGGGCCCATCCACCGCGCCG 360
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ACCGGCCGCGGCCGCCGAGGAGGATCGTCTCCGTTGGCGGGAATGGCGGCGACCGCCGTA 420
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGTTGGACTCTACAAAGCAGGAGCTACCGAGGGGTGGGAAGGAGCCGCGTCTGGCTGCGT 480
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TCAATCCTAGGAGGGATTTCCAGACGGCCGCGCCCTGGTGGTGGCAATGGAGCTCGTCTT 540
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      CCGCCATTCCTTCGCGAACAAAGGAGGCATCCTTCTGTTTCTTCGGTCCCAAGAGATCCT 600
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ACTCAGTGATGCCTCTGTTCCAGGCGCATCAGGAGTCCAGTGGTACATCGATGGTGCCGC 660
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TGATTGCTAGAGGTCTTGCCAGTGCTCGGATTGCTCCCTCGCAGTTGAATGGAGAGAGGT 720
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TCTACTCGTTCGCAGCAGGGCGATTTGGCAGGAAATTTAGGCCAGACTCCTCAGATGAGG 780
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ATGATGAGGATATATCAACTGCGAAGAAGGATATGAGGTTTGCGAGGTTTGGAGCATCCA 840
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GTGAGGAGGAATCAGGATACGATGAATTGGAGGCGAGAAGTGCCATCAGGAAGAAATGGA 900
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GCAGTGCTGCTTTGAGGAACTGTGATATGAAGAAGGAGAGGAGAGCGCTCAAGTCCTATG 960
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGGAAGAAAACAACGATCTCGCTGGTAGCTTCCGAGAGCTGCGAGAGGAGATAAAGAACA 1020
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GGGAAGTGTTGGGTGCTGAGCGGAGGCGTTACGAGTCGAGGGGCGAATCTTTGTTTACCA 1080
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ATAAAAGATTTGAGGAATGTGGTATCTCTCCCCTAACAGTAAAAGCACTCACTGATGCTG 1140
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GATATGTACAGACTACCGTTGTGCAGGAAACAGCACTTCCTATGTGTCTTGAAGGCAAAG 1200
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ATGTTCTTGTCAAGGCTAAAACTGGAACTGGCAAAAGTGCAGCTTTTCTGCTCCCTGCAA 1260
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TTGAATCAGTCTTGAATGCTATGAAGAGCCATACAAATCATCGAGTGTCTCCAATATTTT 1320
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      CGCTTATCCTTTGCCCTACAAGAGAGCTTGCCATCCAGCTCACAGCTGAGGCAAATGTTC 1380
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TGTTGAAGTACCATCAAGGAATTGGTGTTCAATCTCTTATTGGTGGCACTAGATTCAAGC 1440
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TAGATCAAAGACGTTTAGAATCTGATCCATGCCAGATTTTAGTTGCTACACCTGGTAGAC 1500
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TGCTCGATCACATTGAGAACAAATCTTCATTCTCTGTTCGCTTGATGGGATTGAAGTTGC 1560
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TTGTATTGGATGAAGCTGATCATTTGCTAGATTTGGGTTTCCGTACAGACATTGAAAAGA 1620
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TTGTTGATAGTTTGCCACGTCAAAGACAGACACTACTATTTTCTGCTACAATCCCAAAGG 1680
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGGTTCGAAGGGTTTCACAGCTAGTTTTAAAAAGGGATCATGTTTTTGTTGATACAGTGG 1740
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GCTTGGGAGCTGTTGAAACTCCTACTAAGGTGGAGCAGTTGTATCTCGTTATGCCACATG 1800
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGCTGCATTTTCATATGGTTTATCGCCTTCTCCGAGAACATATTGATCAGGAAGTGGACT 1860
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      ATAAGGTGATTGTTTTCTGCACAACTGCCATGGTGACTGAATTTATGTATATAATGCTTC 1920
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GAGATTTGAAGCTAAATGTCCGAGAAATCCATTCAAGAAAGCCTCAGCTCTATAGAACTC 1980
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GGATATCAGAAGAATTTCGAGATTCTAGTCGCTTGATTCTGGTGACCTCAGATGTTTCAA 2040
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      CACGTGGAGTGAATTATCCAGGTGTCACCTTAGTCATTCAGGTTGGTGTTCCTTCAGATA 2100
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      GAGAGCACTACATCCATCGACTTGGAAGGACCGGAAGAGAAGGTAAATCTGGTAAAGGGA 2160
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      TTCTTTTGCTTGCGCCATGGGAAGAGTATTTCTTAAATGAGATACATGATCTCCCGGTGC 2220
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGAAGTCTCAAACACCAAACATTGACGAGGAGATGAAACGAAAGGTTGATGGTTCAATAA 2280
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AGATAGTTGATATGAGCATCAAGGAGGCAGCATATCACGCATGGCTTGGCTACTACAATT 2340
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      CAATAGGTGATGTTGGAAGAGACAAGACCATGCTTGTTGACCTAGCGAACAGGTTCTGTA 2400
consensus_11479#1      ------------------------------------------------------------
                                                                                   

consensus_11479#0      AATCCATCGGTTTGGAAAAGCCTCCAGCACTGTACAGGAAAACTGCTCTGAAGATGGGCC 2460
consensus_11479#1      ----------------------GCGATGGCATTACAG--AACCTGTTCGCTAGGTCAAC- 35
                                              * *   *  *****  ** *** **   ** *   * 

consensus_11479#0      TTAAGGATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTT 2520
consensus_11479#1      --AAGCATGTACCTGGGATTCGAATCAGGAAATAGCAATTGCATTTCTTTCCTTTTCTTT 93
                         *** ******************************************************

consensus_11479#0      TACTGAAAGATGGCAGATAGATTGAGTGAGAGAGTAGTAGTATCTGTGCTGAACAATTAT 2580
consensus_11479#1      TACTGAAAGATGGCAGATAGATTTAGTGAGAGAGTAGTAGTATCTGTCATCTTTCAGTAA 153
                       *********************** ***********************  *     * ** 

consensus_11479#0      GGAGTAATATATATTTTTAAAATTTCTGAAAGGAGGCAAAGCCCTCCGTATAGGATGTGT 2640
consensus_11479#1      AAAAAAAAAAAAAAAAC-AGAGCGGC---------------------------------- 178
                         *  ** * * *     * *    *                                  

consensus_11479#0      CA 2642
consensus_11479#1      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)