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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2057 fasta sequence
[GCGGCGCTGTTGCTG-GCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT-TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA-AACTGTAAATTACATTATTCATTTGACTATGTGAGGAGCATTGCATAAAAAAAAGACTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACAGTTTGGCCCTGAAAAAAAAAAGA]
[+] EMBL AK068553 [GCGGCGCTGTTGCTG GCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAATTACATTATTCATTTGACTATGTGAGG ]
[+] EMBL CB631492 [ TGCTGCGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGGCACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTGGGCGGCGTGGTTGTGTATATAGATTGGTTTGGTTTGGTTGCCATGGAAGAGAGAGAGAGAACAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCTGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTGTCAGCACGGCCGTCGCGGCGGACATCTCTCAGGCGGCGGCGGTCTC ]
[+] EMBL CB634067 [ GGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGGCACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCAGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTT ]
[+] EMBL CB677592 [ AAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAG ]
[-] EMBL CB631493 [ ACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAAAACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTGGAATGGAAGGGAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAGTTACATTATTCATGTGACTATGTGAGGAGCATT ]
[-] EMBL CB677593 [ ATGAGGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAATTACATTATTCATTTGACTATGTGAGGAGCATTGCATAAAAAAAAGA ]
[-] EMBL CB634068 [ GATTCTGCCTGATCTTACGATTCAAGGATCTCTAAAACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTGGAATGGAAGGGAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAGAACTGTAAATTACATTATTCATGTGACTATGTGAGGAGCATTGCATACATACCTCTCTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACAGTTTGGCCCTGAAAAAAAAAAGA]
consensusID : consensus_11480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1778 fasta sequence
[TCTCTTCCTCCTCTTCTCTTCATTCTCTTCCTGTTCCTCTTCTTCCTCCTCCCATCTCTTCGTCTTCCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCGCGGAGGCGGCCTCGCGCGGCGGCCTGGCGGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATTCTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATGTGAGG]
[+] EMBL AK071584 [TCTCTTCCTCCTCTTCTCTTCATTCTCTTCCTGTTCCTCTTCTTCCTCCTCCCATCTCTTCGTCTTCCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCGCGGAGGCGGCCTCGCGCGGCGGCCTGGCGGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATTCTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATGTGAGG]
consensusID : consensus_11480#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence
[CTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGCGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAATAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTCTTCGTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGACCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGTCTCGATAGGGTGGGGTGTGAGGCAGCGCGTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGTAGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGCATTGGTGTAGATTGGCGAGTGTGGTGATATGGGGAGGTGCGTGTGGCGAGGAGTATGTGGTTGCGATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGGATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTATGACGTGGAGGGAGGGCGAGCTCTTGTTCGGAGGAGAGTATGTGATGGAGATGGGTAATGGGGGCAGATGTGAGGTGTAGATGTGGTTGGCTGTGAGCTGACTAGTCGTGTGGAATGTAGTGAGAGTGCACTGGGTAGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGGTATGATAGATTGGGGG]
[+] EMBL AW155146 [CTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGCGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAATAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTCTTCGTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGACCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGTCTCGATAGGGTGGGGTGTGAGGCAGCGCGTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGTAGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGCATTGGTGTAGATTGGCGAGTGTGGTGATATGGGGAGGTGCGTGTGGCGAGGAGTATGTGGTTGCGATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGGATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTATGACGTGGAGGGAGGGCGAGCTCTTGTTCGGAGGAGAGTATGTGATGGAGATGGGTAATGGGGGCAGATGTGAGGTGTAGATGTGGTTGGCTGTGAGCTGACTAGTCGTGTGGAATGTAGTGAGAGTGCACTGGGTAGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGGTATGATAGATTGGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11480#0 GCGGCGCTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTG 60
consensus_11480#1 ------------------------------------------------------------
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 AACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAG 120
consensus_11480#1 ------------------------------------------------------------
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 GAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCG 180
consensus_11480#1 ------------------------------------------------------------
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 CGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTT 240
consensus_11480#1 ---------------TCTCTTCCTCCTCTTC-TCTTCATTCTCTTCCTGTTCCTCTTCTT 44
consensus_11480#2 ----------------------------------------------CTGTTGCTGG-CTG 13
** ** *
consensus_11480#0 CCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCT 300
consensus_11480#1 CCTCCTCCCATCTCTTCGTCTTCCT----CCTCTGGATCCGCCCCCTCCCCTCTCCTCCC 100
consensus_11480#2 ACCCCACCAAACTTAGCGAGGGGGA-----AGGGAGAACGGCGGTGAACAGCGCGACGGA 68
* * * **
consensus_11480#0 GACCCGTCGCGCG--CCAGCAGCGGTTGC--GACGGCGTCGGCGGCGTGGTTGTGTAGAT 356
consensus_11480#1 CACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCG-CGGAGGCGGCCTCGCGC-GGC 158
consensus_11480#2 CGACGGTTAG-CGAGCGAGCGACGACGC---AACGGAAGAAGAAATAGAGGAGGAC--AC 122
* * ** * ** ** *** * *
consensus_11480#0 AGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGG 416
consensus_11480#1 GGCCTGGC---GGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATT 215
consensus_11480#2 GGCGGCGC----ACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCG 178
* * * * * *** *
consensus_11480#0 TTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTC 476
consensus_11480#1 CTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTC 275
consensus_11480#2 CCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTC 238
**** *** * * * * **** * * ** ** **** * * ***
consensus_11480#0 TACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGC 536
consensus_11480#1 TACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGC 335
consensus_11480#2 TTCGTGTGAGGC-CGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGA 297
* *** * ** ** * * * * * ***** ****** * **
consensus_11480#0 CTGCTGCTGCGCCGCCCGGCGGCGCCG-GGGCTCGTCAACGTCGCCGCGGCCGGGGAGGA 595
consensus_11480#1 CTGCTGCTGCGCCGCCCGGCGGCGCCG-GGGCTCGTCAACGTCGCCGCGGCCGGGGAGGA 394
consensus_11480#2 CCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGT--CTCGATAGGG 355
* * * ***** * ** * * *** ** * * * * * ***
consensus_11480#0 GGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCT 655
consensus_11480#1 GGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCT 454
consensus_11480#2 TGGGGTGTGAGGCAGCGC-GTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGT 414
* ** * * * **** * ** * ** * * * ** * *
consensus_11480#0 CGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGG 715
consensus_11480#1 CGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGG 514
consensus_11480#2 AGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGC-------ATTGG 467
** ** ** * * * * * * * ** * ** * * **
consensus_11480#0 CGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCA 775
consensus_11480#1 CGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCA 574
consensus_11480#2 TGT-----AGATTGGCGA--GTGTGGTGATATGGGG--AGGTGCGTGTGGCGAGGA---G 515
* *** * *** * *** * * ** ** * * * ** *
consensus_11480#0 TGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGG-ATTATGGCGAGG 834
consensus_11480#1 TGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGG-ATTATGGCGAGG 633
consensus_11480#2 TATGTGGTTGCG-ATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGG 574
* ** *** ** * * * * ** **** * * ** **** ** * **
consensus_11480#0 AGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACC 894
consensus_11480#1 AGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACC 693
consensus_11480#2 ATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTA 634
* * ** * * * * * * * * * **** ** * ** *** *
consensus_11480#0 CGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTG 954
consensus_11480#1 CGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTG 753
consensus_11480#2 TGACGTGGAGGGAG------------------GGCGAGCTCTTGTTCGGAGGAGAGTATG 676
* *** *** * ** ** ** * *** * ** **
consensus_11480#0 TGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAG 1014
consensus_11480#1 TGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAG 813
consensus_11480#2 TGATGGAGATGGGT--AATGGGGGCAGATGTGAGGT---GTAGATGTGGT-TGGCTGTGA 730
*** ** * ** * *** ** *** * * * ** ** * ***
consensus_11480#0 ACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACT 1074
consensus_11480#1 ACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACT 873
consensus_11480#2 GCTGA----CTAGTCGT--------GTGGAATG----TAGTGAGAGTGC----ACTGGGT 770
*** *** * * ** * ** ** ** * * *** *
consensus_11480#0 ATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCT 1134
consensus_11480#1 ATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCT 933
consensus_11480#2 AGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGG-TAT 829
* * ** ** ** * *** ** * * * ** * * * * * * *
consensus_11480#0 GCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACA 1194
consensus_11480#1 GCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACA 993
consensus_11480#2 GATAGATTGGGGG----------------------------------------------- 842
* ****** *
consensus_11480#0 ATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTG 1254
consensus_11480#1 ATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTG 1053
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 ATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTA 1314
consensus_11480#1 ATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTA 1113
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 CGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACT 1374
consensus_11480#1 CGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACT 1173
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCC 1434
consensus_11480#1 TCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCC 1233
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTC 1494
consensus_11480#1 TTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTC 1293
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 AAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGG 1554
consensus_11480#1 AAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGG 1353
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 CTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGG 1614
consensus_11480#1 CTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGG 1413
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTG 1674
consensus_11480#1 TAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTG 1473
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 AGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGC 1734
consensus_11480#1 AGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGC 1533
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTG 1794
consensus_11480#1 TGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTG 1593
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGA 1854
consensus_11480#1 TACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGA 1653
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 AAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCG 1914
consensus_11480#1 AAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCG 1713
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 GCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATG 1974
consensus_11480#1 GCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATG 1773
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 TGAGGAGCATTGCATAAAAAAAAGACTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACA 2034
consensus_11480#1 TGAGG------------------------------------------------------- 1778
consensus_11480#2 ------------------------------------------------------------
consensus_11480#0 GTTTGGCCCTGAAAAAAAAAAGA 2057
consensus_11480#1 -----------------------
consensus_11480#2 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||