cluster # 11488

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Oryza sativa
cluster # 11488 cluster # 11488 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11488#0 length = 618 sequences # 7

consensus_11488#1 length = 288 sequences # 1
consensus_11488#2 length = 216 sequences # 1

consensusID : consensus_11488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 618
fasta sequence

                              [CTCAGCTCACCATTGCCCATCAGCACAAC-AAACACACACACACACACAACACACAGAGTAAAATCAGT-AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG-CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC-GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA-TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN]

[+] EMBL CF299395             [CTCAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAa                                                                                                                   ]
[-] EMBL CF299396             [ TCAGCTCACCATTGCCCATCAGCACAACAAAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGACCAaaaaaa                                                                                                              ]
[+] EMBL AK062691             [  CAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATT                                                                                                             ]
[+] EMBL OSC13521             [                CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTTAGTTCTAGTGTTCGCGAGTNTGTTCATTGTACAATCAACATGTNA TACTGTCGAATG NAATACGNTG ACCAAGTGAG ACATATGNTTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN]
[+] EMBL AU093204             [                CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGTAAAGGAGGAGAAACGAGGATGAANCTTNTGGGGAGCGAGAGGAGGCCAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCAAAAAA                                                                                                     ]
[+] EMBL CB679304             [                    CAGCACATC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAAAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACC                                                                                                                               ]
[+] EMBL OSS15871A            [                      GCACAAC AAACACACACACACACACAACACACAGNGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCANAATNGTGTC GGCCGTTTGTACATAGAGG CAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGG TTTTAGTTCTAGT                                                                                                                                                                                               ]




>consensus_11488#0
CTCAGCTCACCATTGCCCATCAGCACAACAAACACACACACACACACAACACACAGAGTA
AAATCAGTAAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGGCAGAGGGG
AGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTG
CGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCAT
CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG
AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT
AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG
TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA
TACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGG
GTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGT
AATTCAAAAATGGNGGGN

consensusID : consensus_11488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA]

[+] EMBL AU162078             [TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA]




>consensus_11488#1
TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTT
CGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTG
TACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGAT
TTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAAT
GCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA

consensusID : consensus_11488#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF331767             [TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11488#2
TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTA
CAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCA
TTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11488#0      CTCAGCTCACCATTGCCCATCAGCACAACAAACACACACACACACACAACACACAGAGTA 60
consensus_11488#1      ------------------------------------------------------------
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      AAATCAGTAAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGGCAGAGGGG 120
consensus_11488#1      ------------------------------------------------------------
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      AGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTG 180
consensus_11488#1      ------------------------------------------------------------
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      CGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCAT 240
consensus_11488#1      -------------------------------------------------------TCCAT 5
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 300
consensus_11488#1      CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 65
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 360
consensus_11488#1      AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 125
consensus_11488#2      ------------------------TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 36
                                               ************************************

consensus_11488#0      AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 420
consensus_11488#1      AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 185
consensus_11488#2      AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 96
                       ************************************************************

consensus_11488#0      TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 480
consensus_11488#1      TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 245
consensus_11488#2      TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 156
                       ************************************************************

consensus_11488#0      TACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGG 540
consensus_11488#1      TACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA----------------- 288
consensus_11488#2      TACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 216
                       ********************** *  *    *       ****                 

consensus_11488#0      GTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGT 600
consensus_11488#1      ------------------------------------------------------------
consensus_11488#2      ------------------------------------------------------------
                                                                                   

consensus_11488#0      AATTCAAAAATGGNGGGN 618
consensus_11488#1      ------------------
consensus_11488#2      ------------------