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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1662 fasta sequence
[ATTCTCTTTGATTTTTGCAAAAAGGCTAGACAACAAGGTTCTCTTCTCCTGGTGCTCAAACGCTCTTTGATTTCTTGCTTTTCAGATACCTACGTGATTAATAAGACGAGTGTGCATCGTCCCAAGTCGCCGGGATCCAGAAGCCGCGCCAAATCCGCCCGGAAT-CCCACCTCCACCACCACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCG----CTCGCATCGTCGCATTGCCACATCCACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTCCCGGCCACCCCGGGACTCCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTCAAAAGCCAGAGGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGATTTCCAAACTGTTGTCAATAGGTGCAAAGAACTTGGCATAAAACACATCAGAAGACCGGCAGTGGACTTCGATCCAGATTCGTTGAGGACTCAATTGCCCAAAGCAGTCTCATCACTAGAATGGGCTATATCGGAAGGCAAAGGGCGGGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCCATTGCTTACATGTTTTGGTTCGAGAATATGGATCTTAGGACAGCTTATGAGAAACTAACTTCTAAAA-GGCCCTGTGGACCCAATAAGAGAGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGATCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCTTTTGAGGGCATTGCTGACTCGGAGAGGAGGTTAATTCAAGAACGGGTCCGTGCTCTTCGGGAGGCTTGAGAAGTAAATGAAAACTTCTCCATATCCTTCTATTCAAGCCTACAGGTCAGGAAATGCAGTAAACATATGATAGAACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACAACAGCAGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGAGGTTTTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGATAATAATAAGAATGACAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGGTCTGGATGATCTTGGTTCTTGGCTGCAATTGCATAGTCTTAATGGCGACCAGTTGTGTAATTGGGAAACTCACACGTACATAGTGCCTCGTATATTCAGAGTATCTTGAGACTGTCACTTTGCTCATGTGTACGGCTATTGCTGTTGAAAGTGAAACACATACTATTGCTGAAAGTGAAAATTCATCATATCATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTACTGATATTTATGTTTTCCTGTCAATTTGATTATTATAACAAGT]
[+] EMBL AU173452 [ATTCTCTTTGATTTTTGCAAAAAGGCTAGACAACAAGGTTCTCTTCTCCTGGTGCTCAAACGCTCTTTGATTTCTTGCTTTTCAGATACCTACGTGATTAATAAGACGAGTGTGCATCGTCCCAAGTCGCCGGGATCCAGAAGCCGCGCCAAATCCGCCGGGAAT CCCACCACCACCACCACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCG CTCGCATCGTCGCATTGCCACATCCACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTTCCGGCCACCCCGGGACTCCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGGAGCACTAGGA ]
[+] EMBL AK072567 [ CATCGTCCCAAGTCGCCGGGATCCAGAAGCCGCGCCAAATCCGGCCGGAATCCCCACCTCCACCACCACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCGCTCTCTCGCATCGTCGCATTGGTACATCAACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTCCCGGCCACCCCGGGACTCCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTCAAAAGCCAGAGGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGATTTCCAAACTGTTGTCAATAGGTGCAAAGAACTTGGCATAAAACACATCAGAAGACCGGCAGTGGACTTCGATCCAGATTCGTTGAGGACTCAATTGCCCAAAGCAGTCTCATCACTAGAATGGGCTATATCGGAAGGCAAAGGGCGGGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCCATTGCTTACATGTTTTGGTTCGAGAATATGGATCTTAGGACAGCTTATGAGAAGCTAACTTCCAAAA GGCCCTGCGGACCCAATAAGAGAGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGATCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCTTTTGAGGGCATTGCTGGCTCGGAGAGGAGTTTAATTCAAGAACGGGTCCGTGCTCTTCGGGAGGCTTGAGAAGTAAATGAAAACTTCTCCACATCCTTCTATTCAAGCCTACAGGTCAGGAAATGCAGTAAACATATGATAGAACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACAACAGCAGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGAGGTTCTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGGTAATAATAAGAATGAAAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGCTCTGGATGATCTTGGTTCTTGGCTGCAATTGCATAGTCTTAATGGCGACCAGTTGTGTAATTGGGAAACTCACACGTACATAGTGCCTCGTATATTCAGAGTATCTTGAGACTGTCACTTTGCTCATGTGTACGGCTATTGCTGTTGAAAGTGAAACACATACTATTGCTGAAAGTGAAAATTCATCATATCATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTACTGATATTTATGTTTTCCTGTCAATTTGATTATTATAACAAGT]
[+] EMBL CF324768 [ CGGGATCCAGAAGCCGCGCCAAATCCGGCCGGAATCCCCACCTCCACCACCACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCGCTCTCTCGCATCGTCGCATTGGTACATCAACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTCCCGGCCACCCCGGGACTCCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTCAAAAGCCAGAGGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGATTTCCAAACTGTTGTCAATAGGTGCAAAGAACTTGGCATAAAACACATCAGAAGACCGGCAGTG ]
[+] EMBL CB626087 [ GCCCGGAAT CCCA CCACCACCACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCG CTCGCATCGTCGCATTGCCACATCCACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTTCCGGCCACCCCGGGACTCCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGGAGCACTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGGTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTCAAAAACCAGAAGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGATTTCCAAACTGTTGTCAATAGGTGCAAAGAACTTGGCATAAAACACATCAGAAGACCGGCAGTGGACTTCGATCCAGATTCGTTGAGGACTCAATTGCCCAAAGCAGTCGCATCACTAGAATGGGCTATATCGGAAGGCAAAGGGCGTGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATCTTAAGACAGCTTATGAGAAACTAACTTCTAAAA GGCCCTGTGGACCCAATAAGAGAGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGATCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCT ]
[+] EMBL C72777 [ TGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTCCCGGCCACCCCGGGACTCCCAGCGCGCGGC NCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCAACNGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGGTATGAATTATGCTATCATAAGTGANAGCTTGATTGTTGGCTCACAACCTCAAAAGCCAGANGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTTACAGCAGGACAAGGACATTGAATATTGGGGCATTGNTTTCC ]
[-] EMBL CA762603 [ ACTANCTTCTAAAAGGGCCCTGTGGACCCAATAAGAGAGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGATCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCTTNTGAGGGCATTGCTGACTCGGAGAGGAGGTTAATTCAAGAACGGGTCCGTGCTCTTCGGGAGGCTTGAGAAGTAAATGAAAACTTCTCCATATCCTTCTATTCAAGCCTACAGGTCAGGAAATGCAGTAAACATATGATAGAACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACTACAGCAGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGAGGTTTTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGATAATAATAAGAATGACAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGGTCTGGATGATCTTGGTTCTT ]
[-] EMBL CB626088 [ AGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGATCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCTTTTGAGGGCATTGCTGACTCGGAGAGGAGGTTAATTCAAGAACGGGTCCGTGCTCTTCGGGAGGCTTGAGAAGTAAATGAAAACTTCTCCATATCCTTCTATTCAAGCCTACAGGTCAGGAAATGCAGTAAACATATGATAGAACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACAACAGCAGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGAGGTTTTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGATAATAATAAGAATGACAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGGTCTGGATGATCTTGGTTCTT ]
[+] EMBL AU173453 [ AACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACAACAGCAGAACCTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAAAGGTTTTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCTGATAATAATAAGAATGACAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGGTCTGGATGATCTTGGTTCT ]
consensusID : consensus_11492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence
[AGAGGACGAGACAAGGGGGTTGAAAGTTAAACACATTCTATTGCTGAAAGTGAAAATTCATCATATTATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTACTGATATTTATGTTTTCCTGTCAAAAAAAAAAAAA]
[-] EMBL CA760941 [AGAGGACGAGACAAGGGGGTTGAAAGTTAAACACATTCTATTGCTGAAAGTGAAAATTCATCATATTATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTACTGATATTTATGTTTTCCTGTCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11492#0 ATTCTCTTTGATTTTTGCAAAAAGGCTAGACAACAAGGTTCTCTTCTCCTGGTGCTCAAA 60
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CGCTCTTTGATTTCTTGCTTTTCAGATACCTACGTGATTAATAAGACGAGTGTGCATCGT 120
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CCCAAGTCGCCGGGATCCAGAAGCCGCGCCAAATCCGCCCGGAATCCCACCTCCACCACC 180
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 ACCACCACCGGCCGGTCTCCTTTCTGCTTGCCTCGCTCGCATCGTCGCATTGCCACATCC 240
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 ACATCCTGCAAACATGGCCGCCATGGCCACCGCCCCGTGTTTCCCGGCCACCCCGGGACT 300
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CCCAGCGCGCGGCGCCGTCGCTGCTAGGAGCAGGATGGCCGCCGGAGGAAGCAGGAGCCA 360
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 ACGGCGGCGGAGTTCCTCTGGGGTTTTCCTGTGCCGCTCCTCCACGACGGGAAGCAGTAG 420
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCA 480
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CGATTTAGGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTCA 540
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 AAAGCCAGAGGATATTGATCACTTAAAAGATGAGGAGAAAGTAGCCTTTATTCTTTGCTT 600
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 ACAGCAGGACAAGGACATTGAATATTGGGGCATTGATTTCCAAACTGTTGTCAATAGGTG 660
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CAAAGAACTTGGCATAAAACACATCAGAAGACCGGCAGTGGACTTCGATCCAGATTCGTT 720
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GAGGACTCAATTGCCCAAAGCAGTCTCATCACTAGAATGGGCTATATCGGAAGGCAAAGG 780
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GCGGGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCCATTGCTTA 840
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CATGTTTTGGTTCGAGAATATGGATCTTAGGACAGCTTATGAGAAACTAACTTCTAAAAG 900
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GCCCTGTGGACCCAATAAGAGAGCGATCCGTGCTGCAACTTATGATCTTGCTAAGAATGA 960
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 TCCACATAAAGAGTCTTTTGACAGTCTGCCAGAGCATGCTTTTGAGGGCATTGCTGACTC 1020
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GGAGAGGAGGTTAATTCAAGAACGGGTCCGTGCTCTTCGGGAGGCTTGAGAAGTAAATGA 1080
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 AAACTTCTCCATATCCTTCTATTCAAGCCTACAGGTCAGGAAATGCAGTAAACATATGAT 1140
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 AGAACTAAATAAACAAATCTGCGCAAATTGAATTCATTATGGAACAGACAACAGCAGAAC 1200
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CTTAGCTCCTCTAGTAGTATTCTTCTTTGCTGCCAGATTGCTAGCTGGTGCAGATGAAGA 1260
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GGTTTTGATTCACCTATCCTCAGAATAAAGCTCAGACAAGATCTAATTTAGTAGGTATCT 1320
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 GATAATAATAAGAATGACAAAATAAGGAGGTGCCAGAAGATGGCATTGCTGGTCTGGATG 1380
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 ATCTTGGTTCTTGGCTGCAATTGCATAGTCTTAATGGCGACCAGTTGTGTAATTGGGAAA 1440
consensus_11492#1 ------------------------------------------------------------
consensus_11492#0 CTCACACGTACATAGTGCCTCGTATATTCAGAGTATCTTGAGACTGTCACTTTGCTCATG 1500
consensus_11492#1 ----------------------------------------------------------AG 2
*
consensus_11492#0 TGTACG-GCTATTGCTGTTGAAAGTGAAACACATACTATTGCTGAAAGTGAAAATTCATC 1559
consensus_11492#1 AGGACGAGACAAGGGGGTTGAAAGTTAAACACATTCTATTGCTGAAAGTGAAAATTCATC 62
* *** * * * ********* ******** *************************
consensus_11492#0 ATATCATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTA 1619
consensus_11492#1 ATATTATCGCCAAATGTGATGTATGCATGTTCAGAGGTTGACTGCGGATGTTTAAGTTTA 122
**** *******************************************************
consensus_11492#0 CTGATATTTATGTTTTCCTGTCAATTTGATTATTATAACAAGT 1662
consensus_11492#1 CTGATATTTATGTTTTCCTGTCAAAAAAAAAAAAA-------- 157
************************ * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||