These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1214 fasta sequence [GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC-TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA-TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGAAAGAA] [+] EMBL OS1169A [GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCC NCCCTCCCCGCTCCGAGGCGGCCGTCTCTANCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCG CATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTAAAGACTTTGGG AACCTGGGATTCTGGTCTAAGTTAGTGTG ANAACTGTCTAAGAAGGAATTTTGTAATT TTGG ANTCG TANAGGGAATG AACATTT CNTTAAATTGTTgaaatt ] [+] EMBL AU069981 [ TGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGGCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGCTTGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTNCCGACCCCGCGGCTTNCCCCGCCGAGGACG ] [+] EMBL AK073270 [ AGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGCAGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGCCGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCCGTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGA ] [+] EMBL BP184927 [ acgaggTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGGCTGCTGC TGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCCCCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAACAGCGCAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCA ] [+] EMBL CA767599 [ AACAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAACTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCTTTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGCAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCGGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACTAATGTTCCTCCGTTCTTTCTTTGGNTGGATTTTTCTCTGCAATTGCTTTGGGGTTTCTTAAAAATTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGNTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGGCTTTCTTACTAACCTTTGGTTATTTCTGAGCATATTANAAGn ] [+] EMBL AK063888 [ TGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTTTTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA TTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATGGAAATTGGAAA ] [+] EMBL CB096779 [ GGTTATATCCGCCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTCCTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAGAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTA CTACCTTTGTTTATTTCTGAGCATATTAGAAGNTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGGTATGGAAATTGGAAAGAA] consensusID : consensus_11496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 427 fasta sequence [ACTAGATACCTCCTAAGGGAA-AAGC-TGCTACATC-GCAG-GCGTACTACCA-GGAATATCTC--GGCCAGAGCCCG-TCTATCTTTAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA] [+] EMBL CB966995 [ACTAGATACCTCCTAAGGGAA AAGC TGCTACATC GCAG GCGTACTACCA GGAATATCTC GGCCAGAGCCCG TCTATCTTTAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA] [+] EMBL CB966986 [ GGAATAAGCTTGCTACATCTGCAGTGCGTACTACCAGGGAATATCTCCTGGCCAGAGCCTGTTCTATCTTTAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCTTCTTTCTTTGGTTGTATTTTTCTCTGCAATCGCTTTGTGTTTTTTTTTTTTTTCTTTTAGTGATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11496#0 GCTGCCCCTCCTCGCCGGAGCAGAGAAACCTCTAGACCGCCTAAACCTACGCAAGGATGC 60 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 AGGCGCTCCTGCTCTCCCCGGCGGCGGCGCCACGGCCGCCCCTCCCCGCTCCGAGGCGGC 120 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CGTCTCTACCCCCTCGAGCCACCTCGATCCTCACGCCGGCGCCGCGCTCCCCCGCTCTCC 180 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 GTGTGGTGGACGCCTTCGCCGCCGGCCGCTGGGGAGGACGCGCTGCGTCGCGCCTCCCGG 240 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CTGCTGCTGCTGCTGCGGCGGCGGCGGCTGAGGCCGGTCCTCCCGACCCCGCGCCTTCCC 300 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CCGCCGAGGACGAGGCCGAGCGCGCCATGCTCGCCCAGGTTAGCAAGAGGCTAGAAAAAA 360 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CAGCACAGTATTTCAAGACTTTGGGCACCCTGGGATTCTGGTCTCAGTTAGTGTGCACAA 420 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CTGTCTCAGCAGGAATTTTGTCATTCTCGGCAGTCGCTACAGGGAATGCAACATCTCCCT 480 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 TTACATTCTTTGCAACTTCAATTGGTATTGTTGCGGCATTTATTTCAGTCTTTTGGGCTT 540 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 TTGGTTATATCCGTCTTTCACAAAGGCTTAAGAGAACAGCAAACAAACCTGCAAAGGCTC 600 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 CTCCACGTGCCGATGTGGTAAAAAATCTCAAAAATGGTATTGTGCTCAATGTTCTTGGAA 660 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 TGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGCCCTCA 720 consensus_11496#1 -------------------------------ACTAGATACCTCCTAAGGGAAAAGCT--G 27 *** * * ** *** * consensus_11496#0 CTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTT 780 consensus_11496#1 CTACATC-GCAG--GCGTACTACCAGG-AATATCTC--GGCCAGAGCCCG--TCTATCTT 79 ******* **** ************ ******** *********** ******** consensus_11496#0 TAGATGTTTTCCTTGTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTAT 840 consensus_11496#1 TAGATGTTTTCCTGNTTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTAT 139 ************* ********************************************* consensus_11496#0 CGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCC 900 consensus_11496#1 CGAGCACACTGGAATTACTGCGATCTGTAACCCTGACAAAAGTAGAAGCTGCCTCAACCC 199 ************************************************************ consensus_11496#0 CTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCCGTTC 960 consensus_11496#1 CTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTCC-TTC 258 ******************************************************** *** consensus_11496#0 TTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGT 1020 consensus_11496#1 TTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTTTTTTT-TTTTCTTTTAGT 317 ***************************************** ** ************ consensus_11496#0 GATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCAT 1080 consensus_11496#1 GATAAGCTTCGATCAGTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCAT 377 ************************************************************ consensus_11496#0 TCAAATCTGCTCGTCTTTCTTATTACCTTTGTTTATTTCTGAGCATATTAGAAGTTTCTG 1140 consensus_11496#1 TCAAATCTGCTCGTCTTTCTTACTACCTTTGTTTATTTCTGAGCATATTA---------- 427 ********************** *************************** consensus_11496#0 TGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTGTTATG 1200 consensus_11496#1 ------------------------------------------------------------ consensus_11496#0 GAAATTGGAAAGAA 1214 consensus_11496#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||