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Oryza sativa
cluster # 11511 cluster # 11511       Sequences # 9       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11511#0 length = 1767 sequences # 2  
 consensus_11511#1 length = 1519 sequences # 6  
consensus_11511#2 length = 288 sequences # 1  
consensusID : consensus_11511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1767
fasta sequence 
                              [ATAAAAAAAAGGAAAAAAAATACCAATAAATCGCGGATTTCCCCTACGCCTCCATTCCCAAGGAGAGCCAGTTCGTGTTTGATGCCAAGGCCTCGCCGCTGCGGTAGGAAGTACTGGTTATTATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGAAAGAAATACAAACAACGATGTTGGTCATGAAAAGCAACTCAATCTTCAGATGTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGTGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATCTGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCTGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTGGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAGCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACAGTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCAGAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTTTCCCCTTTAGTTTCCGGAAGCAAAAGGGATCAAAGATGATATGCTAATGGGGTTGCATTGCAGTTGCTGAAACAGAAATAATGTGAGGAGCATGTGCAACAGCCAACAGCACACGCAATGCAATGTTAAGGAGGAGTGGGCAGGCAAAGCAGGGGCTTCTGTGCAAACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAATCAGCACCCAGATAGTACTGAATACTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTTCATGATTGCTGGCACCTGGAGCAATGGCACATGAACATCGAACGTGGCTTGCCACATCTCAATGCTATGGAGAATGATGATGCGAAAACTGCGGAAAAAGGAGGATTTTTTTCTTTGATTCTTGTGGAAATCGTAAGAAAATTTCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGCTGCCTATGATCCAATTGAAAAAAAAAA]

[+] EMBL AK106339             [ATAAAAAAAAGGAAAAAAAATACCAATAAATCGCGGATTTCCCCTACGCCTCCATTCCCAAGGAGAGCCAGTTCGTGTTTGATGCCAAGGCCTCGCCGCTGCGGTAGGAAGTACTGGTTATTATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGAAAGAAATACAAACAACGATGTTGGTCATGAAAAGCAACTCAATCTTCAGATGTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGTGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATCTGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCTGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTGGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAGCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACAGTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCAGAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTTTCCCCTTTAGTTTCCGGAAGCAAAAGGGATCAAAGATGATATGCTAATGGGGTTGCATTGCAGTTGCTGAAACAGAAATAATGTGAGGAGCATGTGCAACAGCCAACAGCACACGCAATGCAATGTTAAGGAGGAGTGGGCAGGCAAAGCAGGGGCTTCTGTGCAAACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAATCAGCACCCAGATAGTACTGAATACTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTTCATGATTGCTGGCACCTGGAGCAATGGCACATGAACATCGAACGTGGCTTGCCACATCTCAATGCTATGGAGAATGATGATGCGAAAACTGCGGAAAAAGGAGGATTTTTTTCTTTGATTCTTGTGGAAATCGTAAGAAAATTTCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGCTG                         ]
[+] EMBL BQ908062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCAAAGATGATATGCTAATGGGGTTGCATTGCAGTTGCTGAAACAGAAATAATGTGAGGAGCATGTGCAACAGCCAACAGCACACGCAATGCAATGTTAAGGAGGAGTGGGCAGGCAAAGCAGGGGCTTCTGTGCAAACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAATCAGCACCCAGATAGTACTGAATACTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTTCATGATTGCTGGCACCTGGAGCAATGGCACATGAACATCGAACGTGGCTTGCCACATCTCAATGCTATGGAGAATGATGATGCGAAAACTGCGGAAAAAGGAGGATTTTTTTCTTTGATTCTTGTGGAAATCGTAAGAAAATTTCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGCTGCCTATGATCCAATTGAAAAAAAAAA]




>consensus_11511#0
ATAAAAAAAAGGAAAAAAAATACCAATAAATCGCGGATTTCCCCTACGCCTCCATTCCCA
AGGAGAGCCAGTTCGTGTTTGATGCCAAGGCCTCGCCGCTGCGGTAGGAAGTACTGGTTA
TTATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGAAAGAAATACAAACAA
CGATGTTGGTCATGAAAAGCAACTCAATCTTCAGATGTCCCTGAACTACTTTCCTGTTGA
AAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGTGCTGTATCAACTGGGCTAAGACT
GTCCTATGAGAACAATGAGCACACTTCAATCACATCTGGCAGTGGTAACATGTCATCATT
GCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCTGAATTAGACAAAGAAAACAAAGA
GTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTGGTTAAGTGCATGAAAGATGTAAA
GCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAACGAGGAGTAGGAAAGAAGCTGAA
GGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGAT
CAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGT
CGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAGCCCATAGCAGCAATCTCACCAG
GGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGT
GCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCT
GGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACA
CCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCC
CAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGC
TTAGACAGTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCC
TTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGG
TCCTCCAGAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCC
ATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCAT
GTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTTTCCCCTTTAGTTTCCGGAAGCAA
AAGGGATCAAAGATGATATGCTAATGGGGTTGCATTGCAGTTGCTGAAACAGAAATAATG
TGAGGAGCATGTGCAACAGCCAACAGCACACGCAATGCAATGTTAAGGAGGAGTGGGCAG
GCAAAGCAGGGGCTTCTGTGCAAACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAAT
CAGCACCCAGATAGTACTGAATACTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTT
CATGATTGCTGGCACCTGGAGCAATGGCACATGAACATCGAACGTGGCTTGCCACATCTC
AATGCTATGGAGAATGATGATGCGAAAACTGCGGAAAAAGGAGGATTTTTTTCTTTGATT
CTTGTGGAAATCGTAAGAAAATTTCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGC
TGCCTATGATCCAATTGAAAAAAAAAA

consensusID : consensus_11511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1519
fasta sequence 
                              [CCCAACGCCGCCGCTCCTCTCGCGGATTCCCCAACCCTAAACCGCCGGCGGTTTCTNCGGCGGCGGCGGCGGCGGCGCGTCGAGTCGGCGGAGTCTCCGGNTCGGNTCGGGTTCGTCGCTGATCGAGGAGAGATCGCTTCGCCGTCGTCTCGGGGGAGAGGAGCAGGATGGACGGGGAGATGTTCGGAAGTGGCCACTGGGGTGGTTCCTTCCCCTACGCCTCCATTCCCAAGGAGAGCCAGTTCGTGTTTNATGCCAAGGCCTCGCCGCTGCAGCTGCA-NTCTTCGGGAGCNCCGCAGTTCCTGCGGTAGGAAGTACTGGTTATAATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGGAAG-AATACAAACAACGATTTTTGGCATGAAAAGCAACTCAATCTTCAGATGTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGTGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATCTGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCTGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTGGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAG-CCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATG-CA-GGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCA-AGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACA-GTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCA-GTTGTCATTCTTACA-TGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCA-GAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTTTCCCCAAAAAAAAAAAAAA]

[+] EMBL AU069704             [CCCAACGCCGCCGCTCCTCTCGCGGATTCCCCAACCCTAAACCGCCGGCGGTTTCTNCGGCGGCGGCGGCGGCGGCGCGTCGAGTCGGCGGAGTCTCCGGNTCGGNTCGGGTTCGTCGCTGATCGAGGAGAGATCGCTTCGCCGTCGTCTCGGGGGAGAGGAGCAGGATGGACGGGGAGATGTTCGGAAGTGGCCACTGGGGTGGTTCCTTCCCCTACGCCTCCATTCCCAAGGAGAGCCAGTTCGTGTTTNATGCCAAGGCCTCGCCGCTGCAGCTGCA NTCTTCGGGAGCNCCGCAGTTCCTGCGGTAGGAAGTACTGGTTATAATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGGAAG AATACAAACAACGATTTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK102708             [                             CCCAACCCTAAACCGCCGGCGGTTTCTGCGGCGGCGGCGGCGGCGGCGCGTCGAGTCGGCGGAGTCTCCGGATCGGATCGGGTTCGTCGCTGATCGAGGAGAGATCGCGTCGCCGTCGTCTCGGGGGAGAGGAGCAGGATGGACGGGGAGATGTTCGGGAGTGGCCACTGGGGTGGTTCCTTCCCCTACGCCTCCATTCCCAAGGAGAGCCAGTTCGTGTTTGATGCCAAGGCCTCGCCGCTGCAGCTGCAGCTCTTCGGGAGCGCCGCAGTTCCTGCGGTAGGAAGTACTGGTTATTATAACTACATTGCAAACAACCACCTCTCTGCTATGAATCAAGAAAGAAATACAAACAACGATGTTGGTCATGAAAAGCAACTCAATCTTCAGATGTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGTGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATCTGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCTGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTGGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAG CCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATG CA GGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCA AGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACA GTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCA GTTGTCATTCTTACA TGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCA GAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCT                                                 ]
[+] EMBL AK058789             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTGAACGAGGAGTAGGAAAGGAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAGAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCGGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAG CCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATG CA GGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCA AGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACA GTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCA GTTGTCATTCTTACA TGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCA GAGTCTCTTGATAACCATAT                                                                                                                                                     ]
[-] EMBL CA759415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TAGCACTGCACAACCAGTCTATCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTAG CCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATG CA GGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCA AGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACA GTGGTACACTGAAGCCGTATATACAAAGCT AATCTCTCTGCCCCTCCCCCCCTTCCA GTTGTCATTCTTACA TGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCA GAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTTTCCCCAAAAAAAAAAAAAA]
[-] EMBL CB965835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGCAGATGGTAGCCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATG CA GGTTGTGCAGAATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGTAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCA AGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCTTAGACA GTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCA GTTGTCATTCTTACA TGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCA GAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTT                                                    ]
[+] EMBL BI813013             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCAT GCTGATGGTGGGCTGGGAGCATGCCACGGTTGT CAGAATGAAGGAGGCACCGGTGCTGGTGATCCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGTGCCCTGTCTGCCGCTTCCCCACAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGC ACAGCCTTATAATCATCAGCTTAGACACGTGGTACACTGAAGCCGTATATACCAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCACGTTGTCATTCTTACACTGGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCACGAGTCTCTTGATAACCATATATATAGTTTTAGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACCATGATAAaaaaaaaa                                                    ]




>consensus_11511#1
CCCAACGCCGCCGCTCCTCTCGCGGATTCCCCAACCCTAAACCGCCGGCGGTTTCTNCGG
CGGCGGCGGCGGCGGCGCGTCGAGTCGGCGGAGTCTCCGGNTCGGNTCGGGTTCGTCGCT
GATCGAGGAGAGATCGCTTCGCCGTCGTCTCGGGGGAGAGGAGCAGGATGGACGGGGAGA
TGTTCGGAAGTGGCCACTGGGGTGGTTCCTTCCCCTACGCCTCCATTCCCAAGGAGAGCC
AGTTCGTGTTTNATGCCAAGGCCTCGCCGCTGCAGCTGCANTCTTCGGGAGCNCCGCAGT
TCCTGCGGTAGGAAGTACTGGTTATAATAACTACATTGCAAACAACCACCTCTCTGCTAT
GAATCAAGGAAGAATACAAACAACGATTTTTGGCATGAAAAGCAACTCAATCTTCAGATG
TCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAGT
GCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATCT
GGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGCT
GAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATTG
GTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGAA
CGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAAG
AGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTCG
GTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGTA
GCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCT
TCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATC
AACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGCG
GTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGAC
GTGTGCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTA
GCAACAGCCTTATAATCATCAGCTTAGACAGTGGTACACTGAAGCCGTATATACAAAGCT
AAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGTT
GATTGGGACTATGGAAGCTATGGTCCTCCAGAGTCTCTTGATAACCATATATATAGTTTT
AGAAGCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTGGA
GTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAATGAGTATTTTCTTTT
TCCCCAAAAAAAAAAAAAA

consensusID : consensus_11511#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence 
                              [CTGTGATGACTAGTGGGTGACTATCTGGAATCCCGTGATGATGACTAAGCTGAAATGCTGCTGCTGGCCCCTGCCCCCTCCTGTGCCAGTGTGTGCATTGCTTGACATGGGTGTGTGAGATGTGTGTTGGATTGGGGACTATGGGAAGCTATGGTGCCTGCCAGAGTCTCTTGATGAACCATGATATATGAGTGTTTGAGAAGCTGGTTACATGTGCACATGCCATGATGCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGT]

[-] EMBL CB965642             [CTGTGATGACTAGTGGGTGACTATCTGGAATCCCGTGATGATGACTAAGCTGAAATGCTGCTGCTGGCCCCTGCCCCCTCCTGTGCCAGTGTGTGCATTGCTTGACATGGGTGTGTGAGATGTGTGTTGGATTGGGGACTATGGGAAGCTATGGTGCCTGCCAGAGTCTCTTGATGAACCATGATATATGAGTGTTTGAGAAGCTGGTTACATGTGCACATGCCATGATGCAGAAAAAAGGTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGT]




>consensus_11511#2
CTGTGATGACTAGTGGGTGACTATCTGGAATCCCGTGATGATGACTAAGCTGAAATGCTG
CTGCTGGCCCCTGCCCCCTCCTGTGCCAGTGTGTGCATTGCTTGACATGGGTGTGTGAGA
TGTGTGTTGGATTGGGGACTATGGGAAGCTATGGTGCCTGCCAGAGTCTCTTGATGAACC
ATGATATATGAGTGTTTGAGAAGCTGGTTACATGTGCACATGCCATGATGCAGAAAAAAG
GTTATCATCCTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11511#0      ------------------------------------------------------------
consensus_11511#1      CCCAACGCCGCCGCTCCTCTCGCGGATTCCCCAACCCTAAACCGCCGGCGGTTTCTNCGG 60
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ------------------------------------------------------------
consensus_11511#1      CGGCGGCGGCGGCGGCGCGTCGAGTCGGCGGAGTCTCCGGNTCGGNTCGGGTTCGTCGCT 120
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ---------------------------------------------------ATAAAAAAA 9
consensus_11511#1      GATCGAGGAGAGATCGCTTCGCCGTCGTCTCGGGGGAGAGGAGCAGGATGGACGGGGAGA 180
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      AGGAAAAAAAATACCAATAAATCGCGGATTTCCCCTACGCCTCCATTCCCAAGGAGAGCC 69
consensus_11511#1      TGTTCGGAAGTGGCCACTGGGGTGGTTCCTTCCCCTACGCCTCCATTCCCAAGGAGAGCC 240
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      AGTTCGTGTTTGATGCCAAGGCCTCGCCGCTGC--------------------------- 102
consensus_11511#1      AGTTCGTGTTTNATGCCAAGGCCTCGCCGCTGCAGCTGCANTCTTCGGGAGCNCCGCAGT 300
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ------GGTAGGAAGTACTGGTTATTATAACTACATTGCAAACAACCACCTCTCTGCTAT 156
consensus_11511#1      TCCTGCGGTAGGAAGTACTGGTTATAATAACTACATTGCAAACAACCACCTCTCTGCTAT 360
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GAATCAAGAAAGAAATACAAACAACGATGTTGGTCATGAAAAGCAACTCAATCTTCAGAT 216
consensus_11511#1      GAATCAAGGAAGAA-TACAAACAACGATTTTTGGCATGAAAAGCAACTCAATCTTCAGAT 419
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAG 276
consensus_11511#1      GTCCCTGAACTACTTTCCTGTTGAAAATCTTGATCGGTTAGCACGTATTGGTAATCCAAG 479
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      TGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATC 336
consensus_11511#1      TGCTGTATCAACTGGGCTAAGACTGTCCTATGAGAACAATGAGCACACTTCAATCACATC 539
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      TGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGC 396
consensus_11511#1      TGGCAGTGGTAACATGTCATCATTGCCTATCATGGCATCCTTTGTTGATGAAGTGATGGC 599
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      TGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATT 456
consensus_11511#1      TGAATTAGACAAAGAAAACAAAGAGTTCAACTGTTATTTCGGACTTCAGGTGGAACAATT 659
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGA 516
consensus_11511#1      GGTTAAGTGCATGAAAGATGTAAAGCAGAGGCAGATGGTTGAATTTCTTGCATCCCTTGA 719
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAA 576
consensus_11511#1      ACGAGGAGTAGGAAAGAAGCTGAAGGAGAAAGAACTCGAGGTGGAGGCCATGAACAGGAA 779
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTC 636
consensus_11511#1      GAGCAAGGAACTGAACGAACAGATCAGGCAGGTTGCATTGGAAGTCCAGTCATGGCAGTC 839
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGT 696
consensus_11511#1      GGTAGCACTGCACAACCAGTCTGTCGCTAACAGCATGAAAAGCAAGCTCATGCAGATGGT 899
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      AGCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGC 756
consensus_11511#1      AGCCCATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGC 959
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      TTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCAT 816
consensus_11511#1      TTCCAGTCAGAATGTCAATGCTGTGCCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCAT 1019
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      CAACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGC 876
consensus_11511#1      CAACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAGAATGAAGGAGGCAGC 1079
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGA 936
consensus_11511#1      GGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGA 1139
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      CGTGTGCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCT 996
consensus_11511#1      CGTGTGCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCT 1199
consensus_11511#2      --------------------------------------CTGTGATGACTAGTGGGTGACT 22
                                                              ** *** *  *     *  **

consensus_11511#0      AGCAACAGCCTTATAATCATCAGCTTAGACAGTGGTACACTGAAGCCGTATATACAAAGC 1056
consensus_11511#1      AGCAACAGCCTTATAATCATCAGCTTAGACAGTGGTACACTGAAGCCGTATATACAAAGC 1259
consensus_11511#2      ATCTGGAATCCCGTGATGATGA--CTAAGC--TGAAATGCTGCTGCTGGCCC-------C 71
                       * *   *  *   * ** ** *   **  *  **  *  ***  ** *           *

consensus_11511#0      TAAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGT 1116
consensus_11511#1      TAAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACATGGTGTGTAGATTTGT 1319
consensus_11511#2      TGCCCCCTCCTGTGCCAGTGTGTGCATTGCTTGACATGGGTGTGTGAGATGTGTGTTGGA 131
                       *    *   ***  **              *** ***   *   **   ***   ** * 

consensus_11511#0      TGATTGGGACTATGG-AAGCTATGGTCCT--CCAGAGTCTCTTGAT-AACCAT-ATATAT 1171
consensus_11511#1      TGATTGGGACTATGG-AAGCTATGGTCCT--CCAGAGTCTCTTGAT-AACCAT-ATATAT 1374
consensus_11511#2      T--TGGGGACTATGGGAAGCTATGGTGCCTGCCAGAGTCTCTTGATGAACCATGATATAT 189
                       *  * ********** ********** *   *************** ****** ******

consensus_11511#0      A---GTTTTAGAAGCTG-TTACATGT-CACAT-CCATAT--CAGAAAAAAGGTTATCATC 1223
consensus_11511#1      A---GTTTTAGAAGCTG-TTACATGT-CACAT-CCATAT--CAGAAAAAAGGTTATCATC 1426
consensus_11511#2      GAGTGTTTGAGAAGCTGGTTACATGTGCACATGCCATGATGCAGAAAAAAGGTTATCATC 249
                           **** ******** ******** ***** ****    *******************

consensus_11511#0      CTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAAT 1283
consensus_11511#1      CTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGTTTCCTGGTTGCACTGAGGAAT 1486
consensus_11511#2      CTGCCAACGTTGGAGTGGCAATTACAATGATAACCATGT--------------------- 288
                       ***************************************                     

consensus_11511#0      GAGTATTTTCTTTTTCCCCTTTAGTTTCCGGAAGCAAAAGGGATCAAAGATGATATGCTA 1343
consensus_11511#1      GAGTATTTTCTTTTTCCC----------CAAAAAAAAAAAAAA----------------- 1519
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ATGGGGTTGCATTGCAGTTGCTGAAACAGAAATAATGTGAGGAGCATGTGCAACAGCCAA 1403
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      CAGCACACGCAATGCAATGTTAAGGAGGAGTGGGCAGGCAAAGCAGGGGCTTCTGTGCAA 1463
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ACGGAAAGGATGAGTGCATCTGAAGTTACACCCCAATCAGCACCCAGATAGTACTGAATA 1523
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      CTGTTGCACGCATCATGCATGCCGTTCAGGTAAGGTTCATGATTGCTGGCACCTGGAGCA 1583
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      ATGGCACATGAACATCGAACGTGGCTTGCCACATCTCAATGCTATGGAGAATGATGATGC 1643
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      GAAAACTGCGGAAAAAGGAGGATTTTTTTCTTTGATTCTTGTGGAAATCGTAAGAAAATT 1703
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      TCCTGTGTTCCAAACGATGCCTAGTGAGGATTAATGCTGCCTATGATCCAATTGAAAAAA 1763
consensus_11511#1      ------------------------------------------------------------
consensus_11511#2      ------------------------------------------------------------
                                                                                   

consensus_11511#0      AAAA 1767
consensus_11511#1      ----
consensus_11511#2      ----


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)