These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence [CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACANATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGACCCCCATAGAACTTTCATAAC-ATGAAAGGAAAAATCCCCCGGAACTTAGTTGGGAGGTGCATATGACAAAT-GGGTCAATGTATGGTTAAAT-AAGGGGACCCCTGGGTTTGGGTTAGGTCCTTTTGGGAGGG-AACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG] [+] EMBL CF333520 [CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAG ] [+] EMBL BE040591 [ ACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACANATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGACCCCCATAGAACTTTCATAAC ATGAAAGGAAAAATCCCCCGGAACTTAGTTGGGAGGTGCATATGACAAAT GGGTCAATGTATGGTTAAAT AAGGGGACCCCTGGGTTTGGGTTAGGTCCTTTTGGGAGGG AACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG] [+] EMBL BE040598 [ ACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGCCGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGTCTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTGACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTATCTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCTCGTCCGCTGCGGACCATAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGGTGAACTTCTGGAGAAAGAGATTGGTGAGCTTTGTGGGACCCCAGTAGAAACTTCATAACAATG AAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGGGGTCAATGTATGTTAAAATCAAGGTGACGCCTTGGTAT GGTTAGGTTCTTTT GAAGGGAAACCCAAAATTTTTGTT GTCCTAGGACACCGTCCGAAcca ] consensusID : consensus_11513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [ACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTACCCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGTGTCAATGTATGTTAAATCAGGTGACGCTTGGTATGGTTAGTTCTTTTGATGGAACCAAAATTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAAGTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAAGCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA] [-] EMBL CF333519 [ACCACAGGTCGATACTACCAGAGGATGAGTATCACAAATTAGCAGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTACCCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGGAACTAAGTTGGATGGTGCATATGACAAATGTGTCAATGTATGTTAAATCAGGTGACGCTTGGTATGGTTAGTTCTTTTGATGGAACCAAAATTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAAGTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAAGCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA] consensusID : consensus_11513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 618 fasta sequence [TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC-AGACTCAGCCCCGAGC-TGATGC-AGGATGAGTCGCAT-AGGGCGTTCCAG-TGTTGACATAATCTGA-TCGGTGCTTGTT-AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATAACAGCCTGACAACTCATGCTACTCCCAGTATTCACATTTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA] [+] EMBL AK109278 [TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATA ] [+] EMBL C29141 [ ACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTNCGTCCTCATGGTCAAGACTTAGCCCCGAGCTTAATGCAAGGATGAATCGCATAAGGGGGTTNCAGTTTTTGACATAATCTNATTCGGTGCTTTTTAAGCTAattg ] [+] EMBL AU165292 [ CCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAAaaaaa ] [+] EMBL AU091313 [ GGTTGAGCTGCCGTTTTCTGTAATCTCCNTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTNCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCNTGGAGGGGCTGATCGAGGAGCTNTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTC AGACTCAGCCCCGAGC TGATGC AGGATGAGTCGCAT AGGGCGTTCCAG TGTTGACATAATCTGA TCGGTGCTTGTT AGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATAACAGCCTGACAACTCATGCTACTCCCAGTATTCACATTTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA] [+] EMBL C74086 [ GTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCANCTTCCGGAGCCTGAAGAGGAACGCGGCGATGCTAGGGCTCGGCGANCTCCGGGACGACGANCTGTCGGAGATGATGAGGGAAGGGG CCTCGACGGGGACGGCGCGCTTGACCAa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11513#0 CTCGCCGCATCCTCGACCGGACCGGGTTAACGCATCCTCCTCCCCACTTCGACGGCGCGC 60 consensus_11513#1 ------------------------------------------------------------ consensus_11513#2 ------------------------------------------------------------ consensus_11513#0 CGGCGGCGATGGCGTCGCGGAAGCTCGTCCTCGGCCTCACGGCGGCAAGGCGGTTGAGGT 120 consensus_11513#1 ------------------------------------------------------------ consensus_11513#2 ------------------------------------------------------------ consensus_11513#0 CTCGCGCTCCCGTCCTCGTCTCGTCCTCTCCCTTCCTGGAAGCCTCCACATCGACTTCTG 180 consensus_11513#1 ------------------------------------------------------------ consensus_11513#2 ------------------------------------------------------------ consensus_11513#0 ACGCCACCGCCGCCACCGCGACGCGGGGTTCGGGGTTGGGGCCGTGGGGGCTGTTCCTAT 240 consensus_11513#1 ------------------------------------------------------------ consensus_11513#2 -----------------------TCCATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTT 37 consensus_11513#0 CTTCGAGGGCCCTCTCGTCGACTCGTCCGGTGTCTCTGTCCGCCGGTGATGCGCCTGGCT 300 consensus_11513#1 ------------------------------------------------------------ consensus_11513#2 CTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCATGGGCGCCGCCGACA 97 consensus_11513#0 CGTCCGCTGCGGACCATAGGTCGAT-ACTACCAGAGGATGAGTATCACAAATTAG----C 355 consensus_11513#1 ------------ACCACAGGTCGAT-ACTACCAGAGGATGAGTATCACAAATTAG----C 43 consensus_11513#2 AGGGCAC--CGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGT 155 ** **** *** ** * * ** * ** * consensus_11513#0 AGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCT--CTTCAG 413 consensus_11513#1 AGATGAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCT--CTTCAG 101 consensus_11513#2 GGAGGGGCTGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGG 215 ** * * ** * ** ** * * *** *** * * * * consensus_11513#0 ATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTT- 472 consensus_11513#1 ATGGATGGCTTTGACATAGACTATGGGAATCAAGTTCTAACACTAAGGTTAGGAGAGTT- 160 consensus_11513#2 CAAGATCACCTTC-CGGAGCCTG-AAGAGGAACGCGGCGATGCTAGGGCTCGGCGAGCTC 273 *** * ** * ** ** ** * * * *** ** * ** *** * consensus_11513#0 -GGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTG 531 consensus_11513#1 -GGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGCTATCTTCACCTG 219 consensus_11513#2 CGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGACGGCGCGCTG 333 *** * * *** * * * ** *** ** * *** consensus_11513#0 TG--AGTGGGCCTTCTAGGTTCGATTGG---GATGCACCAACANATTGTTGGATATACAG 586 consensus_11513#1 TG--AGTGGGCCTTCTAGGTTCGATTGG---GATGCACCAACAAATTGTTGGATATACAG 274 consensus_11513#2 GACCAGATGGAGTTCTGCGTCCTCATGGTCAGACTCAGCCCCGAGCTGATGCAGGATGAG 393 ** ** **** ** * *** ** ** * * ** ** * ** consensus_11513#0 GCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGGGGGAC 646 consensus_11513#1 GCGGACAGGAGCTAATCTTGTTGAACTTCTGGAGAAAGAGATTGGTGAGCTCTGTGGTAC 334 consensus_11513#2 TCGCATAGGGCGTTCCAGTGTTGACATAATCTGATCGGTGCTTGTTAGCTAGTGGAATGC 453 ** * *** * ****** * * * * *** * ** * consensus_11513#0 CCCCATAGAACTTTCATAACATGAAAGGAAAAATCCCCCGG---AACTTAGTTGGGAGGT 703 consensus_11513#1 CCCAGTAGAACTTTCATAACAATGAAGGGAAAATACCACGG---AACTAAGTTGGATGGT 391 consensus_11513#2 AACATTATAATACAGTGAGCGTTTTGAGGATTTGTCGATAGTGTGATTATGCATTTTATT 513 * ** ** * * * * * * * * * * consensus_11513#0 GCATATGACAAATGGGTCAATGTATGGTTAAATAAGGGGACCCCTGGGTTTGGGTTAGGT 763 consensus_11513#1 GCATATGACAAATGTGTCAATGTATG-TTAAATCAGGTGACGCTTGGTAT--GGTTAGTT 448 consensus_11513#2 TCCCCTAACGAA-GCATAACAGCCTG-ACAACTCATGCTACTCCCAGTAT----TCACAT 567 * * ** ** * * * * ** ** * * * ** * * * * * * consensus_11513#0 CCTTTTGGGAGGGAACCAAAAATTTTGGTTGGTCTTAGAACACCGTCCGAATCCCTGGG- 822 consensus_11513#1 CTTTT---GATGGAACCAAAA--TTTTGTTGTACTAGACACGTCCGATCACTGCTTGGAA 503 consensus_11513#2 --TTTGACATGCAAATCACTACACCCACAACGGCTTAAAAAAAAAAAAAAAAA------- 618 *** ** ** * ** * * consensus_11513#0 ------------------------------------------------------------ consensus_11513#1 GTTGGAATAAATACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAA 563 consensus_11513#2 ------------------------------------------------------------ consensus_11513#0 ------------------------------------------------------- consensus_11513#1 GCCGTTGTGGGTGTAGTGATTTGCATGTCAAAATGTGAATACTGGGAGTAAAAAA 618 consensus_11513#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||