These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1523 fasta sequence [CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCGACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGAGTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACGATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA-GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG-AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC-GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTC-TTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAAAAAAAAAAGGCAGCCATCCAGCTCCCTATCACTA] [+] EMBL AK069843 [CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCGACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGAGTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACGATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAACTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGT ] [+] EMBL CF324780 [ gGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCG ] [+] EMBL AU065263 [ ACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGANGTTACACGCTCTGATTTGACCGAA GGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCNTGCTATGCTTGCTGAANGCTTTCTACATGAAGGTGGCATTT ] [-] EMBL CB658101 [ TTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGGCCGTTGCTGTTTGTGTAGAATCCATTTAC TGAAAaaaaaaga ] [+] EMBL CB096357 [ GATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTA ] [+] EMBL AU095254 [ AATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTC TTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAAAAAA ] [+] EMBL AA750445 [ AGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTG ] [+] EMBL CA757667 [ gAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAGACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTCTTTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAATAATAAAAGGCAGCCATCCAGCTCCCTATCACTA] consensusID : consensus_11517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [AATCCCTTGGATGAGTTAGATATCATCCGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACCGAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGGCTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATAATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATATAATAATAAAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGAGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCNANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA] [+] EMBL BQ908383 [AATCCCTTGGATGAGTTAGATATCATCCGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACCGAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGGCTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATAATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATATAATAATAAAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGAGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCNANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11517#0 CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGC 60 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 TCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCG 120 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 ACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGA 180 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 GTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACG 240 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 ATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCAC 300 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 TGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCA 360 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 CCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTG 420 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 AAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCC 480 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 AGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATC 540 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 TGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGA 600 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 AGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAA 660 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 GTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTG 720 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 AAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACT 780 consensus_11517#1 ------------------------------------------------------------ consensus_11517#0 TGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGA 840 consensus_11517#1 --------------------------------------AATCCCTTGGATGA-GTTAGAT 21 *** * ******** ***** consensus_11517#0 ATCATCATCCGATTCTGT-TAGCACAGTGGCAGGAAGGAGTTACACGCTCTGATTTGACC 899 consensus_11517#1 ATCATC--CGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACC 79 ****** * ****** ** ********** *** *********************** consensus_11517#0 GAA-GGGTTCTCTTTTGAGGAATTCATAAA-GCGTGGTGG-AAATCTTGCTA-TGCTTG- 954 consensus_11517#1 GAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGG 139 *** *********** *********** ** ********* ** ******** ****** consensus_11517#0 -CTGAAC-GCTTTCTACATGA----GGTGGCA--TTTAAGCT-CTGGAAAGCTCCTAA-- 1003 consensus_11517#1 CTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATA 199 ***** ***** * * ******* ******** ************ * consensus_11517#0 ATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAA-A 1062 consensus_11517#1 ATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATA-TAATAATA 258 **** * *************************************** * ****** * consensus_11517#0 AAGAGAATGATCTGTT-GGGTTCCTTCTGTAAATGGGAACTGCAGATATT-GCAAATAGA 1120 consensus_11517#1 AAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGA 318 **************** ********************************* ********* consensus_11517#0 TGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGA-ATTGATAAAGGAGATGCTGAT 1179 consensus_11517#1 TGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGAT 378 ************************************** ********************* consensus_11517#0 AAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCG 1239 consensus_11517#1 AAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCG 438 ************************************************************ consensus_11517#0 A-TGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTA 1298 consensus_11517#1 AGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTA 498 * ********************************************************** consensus_11517#0 GAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCT 1358 consensus_11517#1 GAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCT 558 ************************************************************ consensus_11517#0 G-ACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTC-CT 1416 consensus_11517#1 GGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCN 618 * ** ** ************************************************* * consensus_11517#0 AAAAAT-CGTGTGGCTGGAGCCTC-TTTTTTCTTTTAATAAGAACAGTACTACTAATAGA 1474 consensus_11517#1 ANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA------------------ 660 * * ** ** ************** ************* ** consensus_11517#0 ATTGATTCTAGAGAAAAAAAAAAGGCAGCCATCCAGCTCCCTATCACTA 1523 consensus_11517#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||