These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 876 fasta sequence [TTTTGAAGGGAAGATTTCAGGCCACACAACTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT-GGTGGT-CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGT-ACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAG-C-AAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTACCTCGTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACGTACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTAAAATTCAACCCGTGCGAAATTCCTGTAGAATTCATTCGTCCAGAAAAAAAAAGGGGCACATTGTGTCATTGTCCCTCGTAGCGTAAATGATGTCCCTCGTCGTTCTCTCGTGTCACAATTCTTTTCTGTTTACTTCAAAAAAAAAAATCTACGTTTCTAGAAAAAAAAATTCTTATACTCCCTCTATTACTATATAATTATCACCATCGATTAA] [+] EMBL AK063070 [TTTTGAAGGGAAGATTTCAGGCCACACAACTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT GGTGGT CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGT ACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAG C AAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTACCTCGTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACGTACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTA ] [+] EMBL CF333934 [ gagtagaaaAAGATTTCAGGCCACACAACTTGAGCAGAGGAAGGGTGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGTGGGTGGT CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGT ACGTGCTGATGGAGCC ] [+] EMBL OSS15783A [ CCACACAACTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT GGTGGT CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGNAGACGTAACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAG C AAGGAGGAGCTG ] [+] EMBL AU162115 [ CTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT GGTGGT CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTAACGTNCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGA ] [+] EMBL AU032894 [ CTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCNAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT GGTGGT CGTCTGCGCGGCTCGGCGGAGGAGGGCGGACATCCAGTCGGAGA GT ACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAG CAAAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGActn ] [+] EMBL AU162103 [ CGCCAGCAG AAATCGCAGCATTTGCAGG TCTCGCATCATTTTCAGTCGCCACGTGATCCAGGT GGTGGT CGTCTGCGCGGCTCGGCGGNGGAGGGCGGACATCCAGTCGGAGACGT ACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAG C AAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTACCTNNTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACGTACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTAAAATTCAACCCGTGCGAAATTCCTGTAGAATTCATTCGTCCAGAAAAAAAAAGGGGCACATTGTGTCATTGTCCCTCGTAGCGTAAATGATGTCCCTCGTCGTTCTCTCGTGTCACAATTCTTTTCTGTTTACTTCAAAAAAAAAAA ] [+] EMBL AU162116 [ ATTTTCAGTCGCCNCGTGATCCAGGT GGTGGTNCGTCTGCGCGGCTCGGCGGAGGNGGGCGGACATCCAGTCGGAGACGT ACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCC AAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGANCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTNCCTCNTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACGTACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTAAAATTCAACCCGTGCGAAATTCCTGTAGAATTCATTCGTCCAGAAAAAAAAAGGGGCACATTGTGTCATTGTCCCTCGTAGCGTAAATGATGTCCCTCGTCGTTCTCTCGTGTCACAATTCTTTTCTGTTTACTTCAAAAAAAAAAA ] [-] EMBL CF333935 [ TGT GTACCTCGTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACGTACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTAAAATTCAACCCGTGCGAAATTCCTGTAGAATTCATTCGTCCAGAAAAAAAAAGGGGCACATTGTGTCATTGTCCCTCGTAGCGTAAATGATGTCCCTCGTCGTTCTCTCGTGTCACAATTCTTTTCTGTTTACTTCATATAATCTGCTCTACGTTTCTAGAAAAAAAAA ] [+] EMBL AU162198 [ ACGGAACCGATACTCTACTCTGAAAAGTAAGAATTTTACAGAGACTAAAATTCAACCCGTGCGAAATTCCTGTAGAATTCATTCGTCCAGAAAAAAAAAGGGGCACATTGTGTCATTGTCCCTCGTAGCGTAAATGATGTCCCTCGTCGTTCTCTCGTGTCACAATTCTTTTCTGTTTACTTCATATAATCTGCTCTACGTTTCTAGAAATATGTTTTCTTATACTCCCTCTATTACTATATAATTATCACCATCGATTAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||