These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2362 fasta sequence [GTTTCTTTCTGCTCTGTTGCAGCTCCGTTGTCTATGGTAGGTACCTTTTGGACGGAGGTTTTGCATTTGCCTAGTTACTAGTAACTGCATAATTAACAGGAGGAGTACTACCAAGAATGCATACTAATTATTCGCGTGATATTTTGTACGTTTAAGTTTAGAGAACCCGGGATTCGACCAGACCATCAGTCCACTCTCTCTCTCTCTCTGCTTCTTCTTGTGTTGTGCTTGTGCCTCCTCATTATTAATATCTGTACTCCATATTCTACTACTGCATGCTGGAGTACTCTGGTCATGGAGCATTTGACATTTGCATCCACCCCGATGAGCTGAGCTGCTCCATTAATATACTATTCCTCCTCAATTAGTCATTCACTACATACATACAGCAAAATCCTAGCACCACGACGGCGGCCGCATTTGTATGAAATCGATAGATCGTCTCTCTCTCTCTCTCATCCAACCAACCACGCACAGCGACTCAGCGAGCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCGAATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGCCGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTCCACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTCACCACCAGGCTCTTCCTCCTCTTCCCCGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGG-GTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGCCCTCCACCTGTCGCGTGCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGTGCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTGAGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATCTTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAGAACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATG--ATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGATATATAGTATGCC] [+] EMBL AK069021 [GTTTCTTTCTGCTCTGTTGCAGCTCCGTTGTCTATGGTAGGTACCTTTTGGACGGAGGTTTTGCATTTGCCTAGTTACTAGTAACTGCATAATTAACAGGAGGAGTACTACCAAGAATGCATACTAATTATTCGCGTGATATTTTGTACGTTTAAGTTTAGAGAACCCGGGATTCGACCAGACCATCAGTCCACTCTCTCTCTCTCTCTGCTTCTTCTTGTGTTGTGCTTGTGCCTCCTCATTATTAATATCTGTACTCCATATTCTACTACTGCATGCTGGAGTACTCTGGTCATGGAGCATTTGACATTTGCATCCACCCCGATGAGCTGAGCTGCTCCATTAATATACTATTCCTCCTCAATTAGTCATTCACTACATACATACAGCAAAATCCTAGCACCACGACGGCGGCCGCATTTGTATGAAATCGATAGATCGTCTCTCTCTCTCTCTCATCCAACCAACCACGCACAGCGACTCAGCGAGCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCGAATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGCCGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTCCACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTCACCACCAGGCTCTTCCTCCTCTTCCCCGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGG GTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGCCCTCCACCTGTCGCGTGCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGTGCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTGAGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATCTTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAGAACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATG ATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGAT ] [+] EMBL CB637689 [ TTGCATCCACCCCGATGAGCTGAGCTGCTCCATTAATATACTATTCCTCCTCAATTAGTCATTCACTACATACATACAGCAAAATCCTAGCACCACGACGGCGGCCGCATTTGTATGAAATCGATAGATCGTCTCTCTCTCTCTCTCATCCAACCAACCACGCACAGCGACTCAGCGAGCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCGAATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGCCGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTCCACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTCACCACCAGGCTCTTCCTCCTCTTCCCCGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGGNGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGA ] [+] EMBL CB664940 [ ATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGCCCTCCACCTGTCGCGTGCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGTGCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTGAGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATCTTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAGAACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCCATG ] [+] EMBL CB681926 [ CGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGCCCTCCACCTGTCGCGTGCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAG ] [-] EMBL CB664941 [ TTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATG ATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGATATATAGTATG ] [-] EMBL CB629335 [ TGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGTTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTCACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTCGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGATATATAGTATGCC] [-] EMBL CB637690 [ CGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATG ATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGAAATATA ] consensusID : consensus_11541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1906 fasta sequence [AATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGTGCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTGAGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATCTTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAGAACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGAT] [+] EMBL AK072134 [AATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGCGACGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGAGAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTGCTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCACTCCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCCTACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGATGATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGTGCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTGAGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATCTTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAGAACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTTGTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTCAACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAGGAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATACCACGACCCAACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTTTAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAAAGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACATTTTAAAATAAAGAT] consensusID : consensus_11541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [CTCTCCCTTCCAACCAACCACGCACAGCGACTCAGCGAGCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCGAATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGCCGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTCCACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTCACCACCAGGCTCTTCCTCCTCTTCCCCGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGTAAGCTCCCTTAACTAATTCCTACCATGCTCAGATAATGTACATCATGCATGCATGCAACCATATACTCTTCTGATCATAAGTCGTTCTGATTTTTTTCTAAATTAATCTTCTTTAGTTTTAATTAACTTTATAATAATATTTTTAACATAAAACAAGAAAAAATATAAAATATATTGAATGTTAGTTTTAATAAAATTAATTTAATGCTGTAAATATTAATATATTTTTTTATAAACTTGATCGAACTTTTAGAAAAGTCAAAGTGACTTATAAGTATAAATGGGGGAGAGTAATTATAATAGTGATCTTGAATTTTGTGACAATTAATTGGTTGCGTGTATGCATGCAGGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGA] [+] EMBL CB629334 [CTCTCCCTTCCAACCAACCACGCACAGCGACTCAGCGAGCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCGAATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGCCGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTCCACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTCACCACCAGGCTCTTCCTCCTCTTCCCCGCCGTCCTCCTCGCCATCGCCGCCACTTACCTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCTGAGCGACTCAGCTTCCTCACCGAGTAAGCTCCCTTAACTAATTCCTACCATGCTCAGATAATGTACATCATGCATGCATGCAACCATATACTCTTCTGATCATAAGTCGTTCTGATTTTTTTCTAAATTAATCTTCTTTAGTTTTAATTAACTTTATAATAATATTTTTAACATAAAACAAGAAAAAATATAAAATATATTGAATGTTAGTTTTAATAAAATTAATTTAATGCTGTAAATATTAATATATTTTTTTATAAACTTGATCGAACTTTTAGAAAAGTCAAAGTGACTTATAAGTATAAATGGGGGAGAGTAATTATAATAGTGATCTTGAATTTTGTGACAATTAATTGGTTGCGTGTATGCATGCAGGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11541#0 GTTTCTTTCTGCTCTGTTGCAGCTCCGTTGTCTATGGTAGGTACCTTTTGGACGGAGGTT 60 consensus_11541#1 ------------------------------------------------------------ consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TTGCATTTGCCTAGTTACTAGTAACTGCATAATTAACAGGAGGAGTACTACCAAGAATGC 120 consensus_11541#1 ------------------------------------------------------------ consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 ATACTAATTATTCGCGTGATATTTTGTACGTTTAAGTTTAGAGAACCCGGGATTCGACCA 180 consensus_11541#1 ------------------------------------------------------------ consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GACCATCAGTCCACTCTCTCTCTCTCTCTGCTTCTTCTTGTGTTGTGCTTGTGCCTCCTC 240 consensus_11541#1 ------------------------------------------------------------ consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 ATTATTAATATCTGTACTCCATATTCTACTACTGCATGCTGGAGTACTCTGGTCATGGAG 300 consensus_11541#1 ------------------------------------------------------------ consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 CATTTGACATTTGCATCCACCCCGATGAGCTGAGCTGCTCCATTAATATACTATTCCTCC 360 consensus_11541#1 -------------------------------------------AATCGGCCTCGTTCCTC 17 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TCAATTAGTCATTCACTACATACATACAGCAAAATCCTAGCACCACGACGGCGGCCGCAT 420 consensus_11541#1 TTGCTGAGCGACTCAGCTTCCTCACCGAGCAGATT----GCATT-TTACACCGGTCCTAC 72 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TTGTATGAAATCGATAGATCGTCTCTCTCTCTCTCTCATCCAACCAACCACGCACAGCGA 480 consensus_11541#1 T-GTGGGAGGACTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTG- 130 consensus_11541#2 ------------------------------CTCTCCCTTCCAACCAACCACGCACAGCGA 30 * * * * * * * consensus_11541#0 CTCAGCGA-GCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCG 539 consensus_11541#1 -TTGGCGCTGCGAGAAGGAA----AGATTGA-GGTGGTGAAATGCTCCCTGCTGGGATCC 184 consensus_11541#2 CTCAGCGA-GCGAGGAACAACTAGAGCTTGATGCCAGTGTCGCGGATGATGATGGAGTCG 89 * *** ***** * ** ** **** * *** * ** *** ** consensus_11541#0 AATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGC 599 consensus_11541#1 ATCCTCTCCAACCTGCTGCTTGTCCT-CGGCACCTCCCTCTTCCTCGCCGGCATCGCCAA 243 consensus_11541#2 AATACGATGGCCAAGGAGATGGCCGTGCGGCACCACCTCCTTCCGGGGTCTCCTCGCCGC 149 * * * * * * * * ******* ** ***** * * ***** consensus_11541#0 CGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTC 659 consensus_11541#1 C-CTCCGCGCCCA-CCAGCCGTACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTC 301 consensus_11541#2 CGCACCGCACACAACCTCTCATCTTCCTCCCTCCGCAAAAGCTCCGACGCCTCCCTCCTC 209 * * **** * ** ** * * * ** * * * ** ** ******** consensus_11541#0 CACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTC 719 consensus_11541#1 ------ATGCTCGCCGTCCTCTGCCACTCCCTGCCGCTCATGCTCAGGTACGCCGTCACC 355 consensus_11541#2 CACAAGGTTCCCTGCGCCGCCCTCCGCTCCCTCCTCGCCAATCTCAACGACGTCCTCCTC 269 * * * ** * * ** ****** * ** **** *** * ** * consensus_11541#0 ACCACCAGGCTCTTCCTCCTCTTCCCCG---CCGTCCTCCTCGCCATCGCCGCCACTTAC 776 consensus_11541#1 TCCGGCGACCACGCCATCGTCTCCGGCGACGCCGTCCTCCTCGCCATCGCCGCCACTTAC 415 consensus_11541#2 ACCACCAGGCTCTTCCTCCTCTTCCCCG---CCGTCCTCCTCGCCATCGCCGCCACTTAC 326 ** * * * * ** *** * ** ***************************** consensus_11541#0 CTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCT 836 consensus_11541#1 CTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCT 475 consensus_11541#2 CTCCACTTCGGACAGGTGTGGGTGTTTGTGCTTAGCTTAATCGGCCTCGTTCCTCTTGCT 386 ************************************************************ consensus_11541#0 GAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGA 896 consensus_11541#1 GAGCGACTCAGCTTCCTCACCGAGCAGATTGCATTTTACACCGGTCCTACTGTGGGAGGA 535 consensus_11541#2 GAGCGACTCAGCTTCCTCACCGAGTAAGCTCC--CTTAACTAATTCCTACCATGCTCAGA 444 ************************ * * * *** ****** ** ** consensus_11541#0 CTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGA 956 consensus_11541#1 CTACTGAACGCGACATTTGGGAACGTGACGGAGGTGATAATCGCGCTGTTGGCGCTGCGA 595 consensus_11541#2 -TAATGTACAT--CATGCATGCATGCAAC--------CATATACTCTTCTGATCAT---- 489 ** ** ** *** * * * ** * * ** ** * consensus_11541#0 GAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTG 1016 consensus_11541#1 GAAGGAAAGATTGAGGTGGTGAAATGCTCCCTGCTGGGATCCATCCTCTCCAACCTGCTG 655 consensus_11541#2 -------------AAGTCGTT--CTGATTTTTTTCTAAATTAATCTTCTTTAGTTT--TA 532 * ** ** ** * * ** *** *** * * * consensus_11541#0 CTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCG 1076 consensus_11541#1 CTTGTCCTCGGCACCTCCCTCTTCCTCGCCGGCATCGCCAACCTCCGCGCCCACCAGCCG 715 consensus_11541#2 ATTAACTTTATAAT----------------AATATTTTTAACATAAAACAAGAAAAAATA 576 ** * * * ** *** * * * consensus_11541#0 TACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCAC 1136 consensus_11541#1 TACGACACCAAGCAAGCTCACGTCAACACCGCCCTCCTCATGCTCGCCGTCCTCTGCCAC 775 consensus_11541#2 TAAAATATATTGAATGTTAGTTTTAATAAAATTAATTTAATGCTGTAAATATTAATATAT 636 ** * * * * * * * ** * * ***** * * * consensus_11541#0 TCCCTGCCGCTCATGCTCAGGTACGCCGTCACCTCCGGCGACCACGCCATCGTCTCCGGC 1196 consensus_11541#1 TCCCTGC----------------------------------------------------- 782 consensus_11541#2 TTTTTTATA--------------------------------------------------- 645 * * consensus_11541#0 GACGCCGCCCTCCACCTGTCGCGTGCCTGCAGCATCCTCATGCTCATCGCCTACCTGGCC 1256 consensus_11541#1 ------------------------------AGCATCCTCATGCTCATCGCCTACCTGGCC 812 consensus_11541#2 ---------------------------------------------------AACTTGATC 654 ** ** * consensus_11541#0 TACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGAT 1316 consensus_11541#1 TACCTCTTCTTCCAACTCAACACGCATCGCCAGCTGTTTGAGCCCCAACAGGTTGAGGAT 872 consensus_11541#2 GAACT-TTTAGAAAAGTCAAAGTGACTTATAAGT-------------ATAAATGGGGGAG 700 * ** ** ** **** * * ** * * * * *** consensus_11541#0 GATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGT 1376 consensus_11541#1 GATGACGACGATGATTTAGTGATCGCTCAAGATGATGAGCCAGTACTGGGATTCTCGAGT 932 consensus_11541#2 AGTAATTATAAT-----AGTGATC-TTGAATTTTGTGA-CAATTAATTGGTTGCGTGTAT 753 * * * ** ******* * ** * *** * * ** * ** * * * * consensus_11541#0 GCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTG 1436 consensus_11541#1 GCCATGATTTGGCTGGCTCTCATGACTCTCCTGACTGCGCTCTTGTCAGGGTATGTTGTG 992 consensus_11541#2 GC----ATGCAGGCAGATTGCATTTTACACCGGTC----CTACTGTGGGAGGA------- 798 ** ** * * * *** * ** * * ** *** * * * consensus_11541#0 AGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATC 1496 consensus_11541#1 AGCACAATTGAGGCGGCCTCAGAATCATGGGAACTATCAGTGAGCTTCATTAGCATCATC 1052 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAG 1556 consensus_11541#1 TTGCTTCCCATCGTTGGGAACGCAGCAGAGCATGCCGGTGCCGTCATATTTGCTCTCAAG 1112 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 AACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTT 1616 consensus_11541#1 AACAAGATGGATATTACTCTCGGAGTGTCTTTGGGCTCTGCCACACAGATCTCCATGTTT 1172 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTC 1676 consensus_11541#1 GTGGTTCCAGTGAGTGTGATTGTAGCCTGGACTATGGGAATCCCAATGGATCTTGATTTC 1232 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 AACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAG 1736 consensus_11541#1 AACCTGCTGGAGACTGGCTCTCTGTTTCTAGCAATATTAGTGACAGCCTTCACCCTCCAG 1292 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGC 1796 consensus_11541#1 GAGGGAGAATCACATTATCTGAAGGGATTGATTCTTGTCCTGTGCTACGCTGTCATCAGC 1352 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTG 1856 consensus_11541#1 GTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGGTGTTCACCATCTG 1412 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACAT 1916 consensus_11541#1 GATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACAT 1472 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACA 1976 consensus_11541#1 GCGCCTAACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACA 1532 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 CTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGC 2036 consensus_11541#1 CTACTGTACTACTGCTTGCACAAGAGAAGAGGATCGAGTACCGTAGCTAGCACAGGCGGC 1592 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 GGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGA 2096 consensus_11541#1 GGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCGGACTGGGCGGAGA 1652 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATACCACGACCCA 2156 consensus_11541#1 TCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATACCACGACCCA 1712 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 ACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTT 2216 consensus_11541#1 ACCATCCGTCCCTGCAATTGGCTGGTTTGGTCATTCAAATAGGGAATCACAATTGGGTTT 1772 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAA 2276 consensus_11541#1 TAATGGGTTGCTTTAGTTTAGGTCGTTTTGGAATGGTTTGTTTATATTTATCTTTTTCAA 1832 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 AGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACAT 2336 consensus_11541#1 AGGAGTTTGTTTAGGTTTATCGAACTACTAGAATATACATCCATCTTAAGATTATTACAT 1892 consensus_11541#2 ------------------------------------------------------------ consensus_11541#0 TTTAAAATAAAGATATATAGTATGCC 2362 consensus_11541#1 TTTAAAATAAAGAT------------ 1906 consensus_11541#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||