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Oryza sativa
cluster # 11553 cluster # 11553       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11553#0 length = 2071 sequences # 8  
consensus_11553#1 length = 591 sequences # 1  

consensusID : consensus_11553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2071
fasta sequence
                              [ACCTTTCTACCTTTCGTAAAGAACGAATAGGGGGTGATGCCTATGGAATCTCATACTGGTATGAAGATGATCCGATTCTCGGGCATAGATTATATCGTGAAATTAGACGAGTGGAACAGCTGAAGAAAGAGCCAGGAAAAAGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTGTGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTGATGATGTTGCAGAAAAACTCTTTTCAAGTCGGAACAGGACAGAGGCCAACCTTGGCAAGAAGTTGAAGATTGAATATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAAGAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTCTTCGTGATAGAAAGCCAGTAACATACACTTTTGATGAATATGACCGCTCAATAAGTGAGGCCATAAAAATAACGAAGAAAGGAGAAAACTCTGCTGAGCCTGCTGCTCCAGCCAATAGAAGGATCCTTACGCCAAGACCGGAGGCATCGAGCAATGGCAAGGTGAATGGCCTCTCACCGACTACCAATGAATATGATGGAAATTCTTCAAAGTCAGATGACTACCGAGATAGTGATGGTGAAGAAGAAAGTGAGACACTTGATCGGAGCAACCGCCGGAGGAGGAGATCTCAGAGATATACACGGGACTTTGTCGAGGCTGTCTCAGATATTGACCCGAACTTTGACAGTGACGATGAAATCATGGGGGAGGCAGTCTATGATGAGGAATATCTGAGAACTCGAAAACAGCAGAAGACATCAAGTGCTTCTGAAGAGGATGAAGAGTTCCGATTAGAAGAAGATGATGATGAAGAGGAAGAGGAATATTCTTTGAGTACCAGTGAGGATTTAGAGGAGCCACAACAGCGCAAGAAACTGCAAACTCGTGGCCGGCGAGGGGCCAAGCTTAGATCTGTTGATGAAATCCAAACAGGTCTTAGGCGCAGCAAGCGTTCTTCTCGTCAACGCATTAATTACCAACAGTATGATTATTCGGACACAGACACAGAGGGAGGAAAGGAAGGAAAATCCGATGCATCAGATCCTGATGCTGGTTTTGATGCAGAAAATGATACGGAACTCTCGACATCGAGTCAAGAGCAAGAGGAAGATGAGGATGATGGCCCTGAGGAACAAAAGGACAATAGCGACGACAATAAAATGGATGAGGATCATGTAATGGTGGAAAATAAAGAAGAGCAGGAGGAGCAGCCGCAGCCACCTCCACTGCCACCACAGCAGCCTGTGGAAAAAATGGAAGCTCCTAGTAGAGAGATTGAAACTGTAGGGAGAACATTTCTAGATTTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAGGCGCTGCTTGGA-GCAAGGTGTAACTGCGTGAAGTCGTGG-GCCA-TTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTA-CAGTGACAAAAGAGGCGAGGTTCCA-CCGAGGTTGTGGTGAAAAGA-GCTTCAAA-TGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTG-TTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCT-TGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCTCTTCTCGGCATTTCTTACGGCTATATTCCA-CTTGTAGAATGTAGTTTTTGAGTCTAAGTAAGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAGATTGGTACATCTGTGTGCAGTTGATGACCTGATACTACTGAGCTAGTAGG]

[+] EMBL AK070547             [ACCTTTCTACCTTTCGTAAAGAACGAATAGGGGGTGATGCCTATGGAATCTCATACTGGTATGAAGATGATCCGATTCTCGGGCATAGATTATATCGTGAAATTAGACGAGTGGAACAGCTGAAGAAAGAGCCAGGAAAAAGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTGTGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTGATGATGTTGCAGAAAAACTCTTTTCAAGTCGGAACAGGACAGAGGCCAACCTTGGCAAGAAGTTGAAGATTGAATATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAAGAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTCTTCGTGATAGAAAGCCAGTAACATACACTTTTGATGAATATGACCGCTCAATAAGTGAGGCCATAAAAATAACGAAGAAAGGAGAAAACTCTGCTGAGCCTGCTGCTCCAGCCAATAGAAGGATCCTTACGCCAAGACCGGAGGCATCGAGCAATGGCAAGGTGAATGGCCTCTCACCGACTACCAATGAATATGATGGAAATTCTTCAAAGTCAGATGACTACCGAGATAGTGATGGTGAAGAAGAAAGTGAGACACTTGATCGGAGCAACCGCCGGAGGAGGAGATCTCAGAGATATACACGGGACTTTGTCGAGGCTGTCTCAGATATTGACCCGAACTTTGACAGTGACGATGAAATCATGGGGGAGGCAGTCTATGATGAGGAATATCTGAGAACTCGAAAACAGCAGAAGACATCAAGTGCTTCTGAAGAGGATGAAGAGTTCCGATTAGAAGAAGATGATGATGAAGAGGAAGAGGAATATTCTTTGAGTACCAGTGAGGATTTAGAGGAGCCACAACAGCGCAAGAAACTGCAAACTCGTGGCCGGCGAGGGGCCAAGCTTAGATCTGTTGATGAAATCCAAACAGGTCTTAGGCGCAGCAAGCGTTCTTCTCGTCAACGCATTAATTACCAACAGTATGATTATTCGGACACAGACACAGAGGGAGGAAAGGAAGGAAAATCCGATGCATCAGATCCTGATGCTGGTTTTGATGCAGAAAATGATACGGAACTCTCGACATCGAGTCAAGAGCAAGAGGAAGATGAGGATGATGGCCCTGAGGAACAAAAGGACAATAGCGACGACAATAAAATGGATGAGGATCATGTAATGGTGGAAAATAAAGAAGAGCAGGAGGAGCAGCCGCAGCCACCTCCACTGCCACCACAGCAGCCTGTGGAAAAAATGGAAGCTCCTAGTAGAGAGATTGAAACTGTAGGGAGAACATTTCTAGATTTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAGGCGCTGCTTGGA GCAAGGTGTAACTGCGTGAAGTCGTGG GCCA TTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTA CAGTGACAAAAGAGGCGAGGTTCCA CCGAGGTTGTGGTGAAAAGA GCTTCAAA TGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTG TTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCT TGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCTCTTCTCGGCATTTCTTACGGCTATATTCCA CTTGTAGAATGTAGTTTTTGAGTCTAAGTAAGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAGATTGGTACATCTGTGTGCAGTTGATGACCTGATACTACTGAGCTAGTA  ]
[+] EMBL CB660038             [                                       CCTATGGAATCTCATACTGGTATGAAGATGATCCCATTCTCGGGCATAGATTATATCGTGAAATTAGACGAGTGGAACAGCTGAAGAAAGAGCCAGGAAAAAGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTGTGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTGATGATGTTGCAGAAAAACTCTTTTCAAGTCGGAACAGGACAGAGGCCAACCTTGGCAAGAAGTTGAAGATTGAATATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAAGAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTCTTCGTGATAGAAAGCCAGTAACATACACTTTTGATGAATATGACCGCTCAATAAGTGAGGCCATAAAAATAACGAAGAAAGGAGAAAACTCTGCTGAGCCTGCTGCTCCAGCCAATAGAAGGATCCTTACGCCAAGACCGGAGGCATCGAGCAATGGCAAGGTGAATGGCCTCTCACCGACTACCAATGAATATGATGGAAATTCTTCAAAGTCAGATGACTACCGAGATAGTGATGGTGAAGAAGAAAGTGAGACACTTGATCGGAGCAACCGCCGGAGGAGGAGATCTCAGAGATATACACGGGACTTTGTCGAGGCTGTCTCAGATATTGACCCGAACTTTGACAGTGACGATGAAATCATGGGGGAGGCAGTCTATGATGAGGAATATCTGAGAACTCGAAAACAGCAGAAGACATCAAGTGCTTCTGAAGAGGATGAAGAGTTCCGATTAGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL D43562               [                                                                                                                                            AGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTGTGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTNNTGATGTTGCAGAAAAACTCTTTTCAAGTCGGAACAGGACAGAGGCCANCCTTGGCAAGAAGTTGAAGATTGAATATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAAGAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTCTTCGTGATAGAAAGCCAGTAACATACACTTTTGATGNATATGACCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB660039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGAAGAGGAAGAGGAATATTCTTTGAGTACCAGTGAGGATTTAGAGGAGCCACAACAGCGCAAGAAACTGCAAACTCGTGGCCGGCGAGGGGCCAAGCTTAGATCTGTTGATGAAATCCAAACAGGTCTTAGGCGCAGCAAGCGTTCTTCTCGTCAACGCATTAATTACCAACAGTATGATTATTCGGACACAGACACAGAGGGAGGAAAGGAAGGAAAATCCGATGCATCAGATCCTGATGCTGGTTTTGATGCAGAAAATGATACGGAACTCTCGACATCGAGTCAAGAGCAAGAGGAAGATGAGGATGATGGCCCTGAGGAACAAAAGGACAATAGCGACGACAATAAAATGGATGAGGATCATGTAATGGTGGAAAATAAAGAAGAGCAGGAGGAGCAGCCGCAGCCACCTCCACTGCCACCACAGCAGCCTGTGGAAAAAATGGAAGCTCCTAGTAGAGAGATTGAAACTGTAGGGAGAACATTTCTAGATTTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAGGCGCTGCTTGGA GCAAGGTGTAACTGCGTGAAGTCGTGG GCCA TTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTA CAGTGACAAAAGAGGCGAGGTTCCA CCGAGGTTGTGGTGAAAAGAGGCTTCAAA TGTAACAGATTGCTTGTTTGATACTTGGAGGGCATCCAAAGGGA                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI796936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            acATCGAGTTTAGTAGGC CTGCTTGGACCCAAGGTGTAACTGCGTGAAGTC TGGCCCCACTTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTACCAGTGAC AAAGAGGCGAGGTTCCACCCGAGGTTGTGGTGAAAAGA GCTTCAAACTGTAACAGATTGCTTGTTTGATACTT GGGGCCATCC AAGGGAGTTTTTCATTCTATTGCTTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATAC AACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCTCTCCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCTCTTCTC GCATTTCTTACGGCTATATTCCACCTTGTAGAATGTAGTTTTTGAGTCTAAaaaaaa                                                                                        ]
[+] EMBL AK059129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGTTTAGTAGGCGCTGCTTGGA GCAAGGTGTAACTGCGTGAAGTCGTGG GCCA TTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTA CAGTGACAAAAGAGGCGAGGTTCCA CCGAGGTTGTGGTGAAAAGA GCTTCAAA TGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTG TTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCT TGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCTCTTCTCGGCATTTCTTACGGCTATATTCCA CTTGTAGAATGTAGTTTTTGAGTCTAAGTAAGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGA                                                      ]
[-] EMBL CB966544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atTGCGTGAAGTCGTGG GTCA TTGCCATAGATGAATGGTCCCCTAGTAAGATGACTCAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTA CAGTGACCAAAGAGGCGAGGTTCCC CCGAGGTTGTGGCGAAAAGA GCTTCAAA TGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCCAAGGGAGTTTTT  TTTTTTTG TTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACCAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGTGATACTGTTGTCGGGAAATTCT TGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCTCTTCTCGGCATTTCTTACGGCTATAT                                                                                                                              ]
[+] EMBL BE228849             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCTGTGTTGCTGCCAGATACAAACTTGTNGCCTCCATTTGTTTAGCTCNAGGCGCNATACTGTTGTCGGGAAATTCT TGCAACATTCATATGGTGGAAACTTGTNATACNCCTAAGTGCTGCTCTTCTCGGCATNTCTTACGGCTATATTCCA CTTGTANAATGTAGTTTTTGAGTCTAAATAAGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAAATTGGTACATCTGTGTGCANTTGATGACCTGATACTACTGAGCTAGTAGG]


>consensus_11553#0 ACCTTTCTACCTTTCGTAAAGAACGAATAGGGGGTGATGCCTATGGAATCTCATACTGGT ATGAAGATGATCCGATTCTCGGGCATAGATTATATCGTGAAATTAGACGAGTGGAACAGC TGAAGAAAGAGCCAGGAAAAAGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTG TGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTGATGATGTTGCAGAAA AACTCTTTTCAAGTCGGAACAGGACAGAGGCCAACCTTGGCAAGAAGTTGAAGATTGAAT ATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAA GAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTC TTCGTGATAGAAAGCCAGTAACATACACTTTTGATGAATATGACCGCTCAATAAGTGAGG CCATAAAAATAACGAAGAAAGGAGAAAACTCTGCTGAGCCTGCTGCTCCAGCCAATAGAA GGATCCTTACGCCAAGACCGGAGGCATCGAGCAATGGCAAGGTGAATGGCCTCTCACCGA CTACCAATGAATATGATGGAAATTCTTCAAAGTCAGATGACTACCGAGATAGTGATGGTG AAGAAGAAAGTGAGACACTTGATCGGAGCAACCGCCGGAGGAGGAGATCTCAGAGATATA CACGGGACTTTGTCGAGGCTGTCTCAGATATTGACCCGAACTTTGACAGTGACGATGAAA TCATGGGGGAGGCAGTCTATGATGAGGAATATCTGAGAACTCGAAAACAGCAGAAGACAT CAAGTGCTTCTGAAGAGGATGAAGAGTTCCGATTAGAAGAAGATGATGATGAAGAGGAAG AGGAATATTCTTTGAGTACCAGTGAGGATTTAGAGGAGCCACAACAGCGCAAGAAACTGC AAACTCGTGGCCGGCGAGGGGCCAAGCTTAGATCTGTTGATGAAATCCAAACAGGTCTTA GGCGCAGCAAGCGTTCTTCTCGTCAACGCATTAATTACCAACAGTATGATTATTCGGACA CAGACACAGAGGGAGGAAAGGAAGGAAAATCCGATGCATCAGATCCTGATGCTGGTTTTG ATGCAGAAAATGATACGGAACTCTCGACATCGAGTCAAGAGCAAGAGGAAGATGAGGATG ATGGCCCTGAGGAACAAAAGGACAATAGCGACGACAATAAAATGGATGAGGATCATGTAA TGGTGGAAAATAAAGAAGAGCAGGAGGAGCAGCCGCAGCCACCTCCACTGCCACCACAGC AGCCTGTGGAAAAAATGGAAGCTCCTAGTAGAGAGATTGAAACTGTAGGGAGAACATTTC TAGATTTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGA AAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAG GCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAATGG TCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGA TTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAATGT AACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTGTTG TACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCT GTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGT TGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCT CTTCTCGGCATTTCTTACGGCTATATTCCACTTGTAGAATGTAGTTTTTGAGTCTAAGTA AGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAGATTGGTACATCTGTGTGCA GTTGATGACCTGATACTACTGAGCTAGTAGG



consensusID : consensus_11553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [CGGNNTCGCNANGCTTGATGCCNGAGGACGNGANAGGGGATTGAAACTGTAGGGAGAACATTTCTAGATTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAGGCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAATGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTGTTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACC]

[+] EMBL CB096582             [CGGNNTCGCNANGCTTGATGCCNGAGGACGNGANAGGGGATTGAAACTGTAGGGAGAACATTTCTAGATTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAGGCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAATGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGATTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAATGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTGTTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTAGCTCTAGGCGCGATACTGTTGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACC]


>consensus_11553#1 CGGNNTCGCNANGCTTGATGCCNGAGGACGNGANAGGGGATTGAAACTGTAGGGAGAACA TTTCTAGATTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTA TGAAAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAG TAGGCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAA TGGTCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACAT CGATTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAA TGTAACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTG TTGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGAT GCTGTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTAGCTCTAGGCGCGATACT GTTGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11553#0      ACCTTTCTACCTTTCGTAAAGAACGAATAGGGGGTGATGCCTATGGAATCTCATACTGGT 60
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      ATGAAGATGATCCGATTCTCGGGCATAGATTATATCGTGAAATTAGACGAGTGGAACAGC 120
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      TGAAGAAAGAGCCAGGAAAAAGATCTAGGGGGAAAGGAGGGTCTATAATTCTTCCAGTTG 180
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      TGTCCTACCAGTGGGAAACTGTCGCATCCAACTTTGACGAGTTTGATGATGTTGCAGAAA 240
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      AACTCTTTTCAAGTCGGAACAGGACAGAGGCCAACCTTGGCAAGAAGTTGAAGATTGAAT 300
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      ATCTTCCAGATATTGAAAAGATACATAAAAAGAAGGAGAGGTTGCTCAAAAAGCAACAAA 360
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      GAGAAGCCCTTCTCATTGATAGCTTCTTGGCTCCAGATGGATTTACCACTGGTCGCTCTC 420
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      TTCGTGATAGAAAGCCAGTAACATACACTTTTGATGAATATGACCGCTCAATAAGTGAGG 480
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      CCATAAAAATAACGAAGAAAGGAGAAAACTCTGCTGAGCCTGCTGCTCCAGCCAATAGAA 540
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      GGATCCTTACGCCAAGACCGGAGGCATCGAGCAATGGCAAGGTGAATGGCCTCTCACCGA 600
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      CTACCAATGAATATGATGGAAATTCTTCAAAGTCAGATGACTACCGAGATAGTGATGGTG 660
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      AAGAAGAAAGTGAGACACTTGATCGGAGCAACCGCCGGAGGAGGAGATCTCAGAGATATA 720
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      CACGGGACTTTGTCGAGGCTGTCTCAGATATTGACCCGAACTTTGACAGTGACGATGAAA 780
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      TCATGGGGGAGGCAGTCTATGATGAGGAATATCTGAGAACTCGAAAACAGCAGAAGACAT 840
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      CAAGTGCTTCTGAAGAGGATGAAGAGTTCCGATTAGAAGAAGATGATGATGAAGAGGAAG 900
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      AGGAATATTCTTTGAGTACCAGTGAGGATTTAGAGGAGCCACAACAGCGCAAGAAACTGC 960
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      AAACTCGTGGCCGGCGAGGGGCCAAGCTTAGATCTGTTGATGAAATCCAAACAGGTCTTA 1020
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      GGCGCAGCAAGCGTTCTTCTCGTCAACGCATTAATTACCAACAGTATGATTATTCGGACA 1080
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      CAGACACAGAGGGAGGAAAGGAAGGAAAATCCGATGCATCAGATCCTGATGCTGGTTTTG 1140
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      ATGCAGAAAATGATACGGAACTCTCGACATCGAGTCAAGAGCAAGAGGAAGATGAGGATG 1200
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      ATGGCCCTGAGGAACAAAAGGACAATAGCGACGACAATAAAATGGATGAGGATCATGTAA 1260
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      TGGTGGAAAATAAAGAAGAGCAGGAGGAGCAGCCGCAGCCACCTCCACTGCCACCACAGC 1320
consensus_11553#1      ---------------------------------------------------CGGNNTCGC 9
                                                                          *      **

consensus_11553#0      AGCCTGTGGAAAAAATGGAAGCTCCTAGTAGAGAGATTGAAACTGTAGGGAGAACATTTC 1380
consensus_11553#1      NANGCTTGATGCCNGAGGACGN-----GANAGGGGATTGAAACTGTAGGGAGAACATTTC 64
                             **        *** *      *    * **************************

consensus_11553#0      TAGATTTAAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGA 1440
consensus_11553#1      TAGATT-AAATGAGCTTGCACCTGGAGGTGGCTTTGACGATGGGCCAAGCCTGACTATGA 123
                       ****** *****************************************************

consensus_11553#0      AAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAG 1500
consensus_11553#1      AAGATGAGGATATGGATAACAGTTAGGAAATAAGTTTTGTAATACAATCGAGTTTAGTAG 183
                       ************************************************************

consensus_11553#0      GCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAATGG 1560
consensus_11553#1      GCGCTGCTTGGAGCAAGGTGTAACTGCGTGAAGTCGTGGGCCATTGCCATAGATGAATGG 243
                       ************************************************************

consensus_11553#0      TCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGA 1620
consensus_11553#1      TCCACTAGTAAGATGACACAGCAATATCTGAACAGTTTTAGATGATTGCTGTTACATCGA 303
                       ************************************************************

consensus_11553#0      TTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAATGT 1680
consensus_11553#1      TTTACAGTGACAAAAGAGGCGAGGTTCCACCGAGGTTGTGGTGAAAAGAGCTTCAAATGT 363
                       ************************************************************

consensus_11553#0      AACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTGTTG 1740
consensus_11553#1      AACAGATTGCTTGTTTGATACTTGGGGGCCATCCAAAGGGAGTTTTTCATTCTATTGTTG 423
                       ************************************************************

consensus_11553#0      TACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCT 1800
consensus_11553#1      TACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCT 483
                       ************************************************************

consensus_11553#0      GTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGCGATACTGT 1860
consensus_11553#1      GTGTTGCTGCCAGATACAAACTTGTAGCCTCCATTTGTT-AGCTCTAGGCGCGATACTGT 542
                       *************************************** ********************

consensus_11553#0      TGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACCTAAGTGCTGCT 1920
consensus_11553#1      TGTCGGGAAATTCTTGCAACATTCATATGGTGGAAACTTGTAATACACC----------- 591
                       *************************************************           

consensus_11553#0      CTTCTCGGCATTTCTTACGGCTATATTCCACTTGTAGAATGTAGTTTTTGAGTCTAAGTA 1980
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      AGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAGATTGGTACATCTGTGTGCA 2040
consensus_11553#1      ------------------------------------------------------------
                                                                                   

consensus_11553#0      GTTGATGACCTGATACTACTGAGCTAGTAGG 2071
consensus_11553#1      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)