These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1377 fasta sequence [GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT-GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAAAAAAAAAAAAAA] [+] EMBL AK060610 [GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAG ] [+] EMBL AK099158 [ CACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACGGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAAT ] [+] EMBL AK070824 [ CACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACGGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAAT ] [+] EMBL AU094471 [ AGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAG TTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATG ] [+] EMBL AU068574 [ GCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGANCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCT ] [+] EMBL BI805656 [ GTTG TGATCCAATGCTGCCCACT GTGGGACAATTGTTGCTGGCTATTGACTT TT GTTGAACGTGGAGTTACAACCAAGCAGATTAAAGTCGTTTCTGCTGTT CAGCGCCTCCTGCGCTTCAAAAGCTCAGCAAACAATTCCCTGGGCTTCATGTGTACACGGGAACCATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATCCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTAC ATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCC ATCAGAGTAATAAA CAATGTGCAA ] [+] EMBL C99393 [ ATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTGGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAAAAAAAAAAAAAA] consensusID : consensus_11559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 356 fasta sequence [CCGAGGATGTGCGAGCGCTTGTTGACTGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAGATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGAATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATGCCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BU672937 [CCGAGGATGTGCGAGCGCTTGTTGACTGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAGATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGAATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCT ] [+] EMBL AU068573 [ TTTNTTGGGAATATGCATGTTTAATGTTTTCAATTATNTCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATGCCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11559#0 GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCC 60 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGC 120 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTC 180 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 CTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCAC 240 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 CGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGC 300 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGT 360 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGAC 420 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGC 480 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAG 540 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCT 600 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCT 660 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGAT 720 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGT 780 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TGCTGCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTC 840 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 TGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGT 900 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 GTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGG 960 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 AGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTA 1020 consensus_11559#1 ------------------------------------------------------------ consensus_11559#0 CCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATT--CGAGCGCTT-TTGAC 1077 consensus_11559#1 ----------------------------------CCGAGGATGTGCGAGCGCTTGTTGAC 26 ******** ********* ***** consensus_11559#0 T-TGGGAGTC-AGGAACAGT-CGAGTTC-ACGTTCACCTGTAGATTGCCT-CGTT-CGAG 1131 consensus_11559#1 TGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAG 86 * ******** ********* ******* ********************* **** **** consensus_11559#0 ATTCTCCCT-TCGGAACTTATCGT-TTTGTAATTATCCATT-TTGTGTTGTCA-TGTTGA 1187 consensus_11559#1 ATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGA 146 ********* ************** **************** *********** ****** consensus_11559#0 ATATAGGATTAGT-TCACGTCCATC-CACGTTTACAATTTGTTGGGAATATGCATGTTTA 1245 consensus_11559#1 ATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTA 206 ****** **** ********* * ********* ************************ consensus_11559#0 ATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATG 1305 consensus_11559#1 ATGTTTTCAATTATATCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATG 266 *********************************** ************** *** ***** consensus_11559#0 CCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAA 1365 consensus_11559#1 CCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAA 326 ************ * ************* ************ ***** consensus_11559#0 AAAAAAAAAAAA------------------ 1377 consensus_11559#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 356 ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||