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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence
[CGAGCTCGTCAATTGGCASGGAGC-AAG-AGGAGAGAG-CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT-GCCTCGA-GTTCAGCAAGGTC-GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCGCCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC]
[+] EMBL BE229525 [CGAGCTCGTCAATTGGCASGGAGC AAG AGGAGAGAGCCTTGGTGAGCTGCAGAGATGG CCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGBTCACCGTGGRGGACCTCCTGAAGCAGATCGAGTACCTTCTCCGTTCCAAGTGGGTGCCCTCGCTGCGAMGTTCAGCAAGGTCGGGWTTYGTCTACCGTGA ]
[+] EMBL CF196829 [ cGAGCAAAGAAGGAGAGAG CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGANNAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC]
[+] EMBL CF196587 [ GGAGAGAG CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNCNACGTTAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACNNNNCCCCGGGCTGNNNNNNNNCTGGTNGCAACNNNGCCGTCA ]
[+] EMBL CF196077 [ ACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTNNNCAGGTGCAGCTTATCAGCTTCATCGCCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCNNNCATCGTNATATAT N NNNNNGNNNNATtg ]
consensusID : consensus_11565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 589 fasta sequence
[GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATAGNNNNNNNTAATTG]
[+] EMBL CF196803 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATAGNNNNNNNTAATTG]
[+] EMBL CF197379 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNNANNNNNNCGTACCCTGATGCATTCNNNCGTATCATCGGCTTnnnnnn ]
[+] EMBL CF196035 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTACCGTGNNNNNCACAGGTCCCCTGGATACTACGACGGCANNTACTGGACCATGTGGANGNTGCCCATGTTCGGGTGCACCGNNNCCACCCnnnngc ]
[+] EMBL CF298212 [ GCTCACCGCGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAG ]
consensusID : consensus_11565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGNGCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN]
[+] EMBL CF197149 [AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGNGCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11565#0 CGAGCTCGTCAATTGGCASGGAGCAAGAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 60
consensus_11565#1 -------------------------GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 35
consensus_11565#2 -------------------AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 41
*********************************
consensus_11565#0 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 120
consensus_11565#1 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 95
consensus_11565#2 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 101
************************************************************
consensus_11565#0 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 180
consensus_11565#1 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 155
consensus_11565#2 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 161
************************************************************
consensus_11565#0 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 240
consensus_11565#1 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 215
consensus_11565#2 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 221
************************************************************
consensus_11565#0 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 300
consensus_11565#1 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 275
consensus_11565#2 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 281
************************************************************
consensus_11565#0 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA 360
consensus_11565#1 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA 335
consensus_11565#2 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACA 341
******************************** **************************
consensus_11565#0 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGT 420
consensus_11565#1 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGT 395
consensus_11565#2 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGN 401
***********************************************************
consensus_11565#0 GCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATG 480
consensus_11565#1 GCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATG 455
consensus_11565#2 GCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN 461
*********************** ******** **** * *******
consensus_11565#0 CATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCG 540
consensus_11565#1 CATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCG 515
consensus_11565#2 ------------------------------------------------------------
consensus_11565#0 CCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCCGTCATCGTCATATATA 600
consensus_11565#1 CCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATA 575
consensus_11565#2 ------------------------------------------------------------
consensus_11565#0 GNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC 637
consensus_11565#1 GNNNNNNNTAATTG----------------------- 589
consensus_11565#2 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||