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Oryza sativa
cluster # 11566 cluster # 11566       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11566#0 length = 937 sequences # 7  
consensus_11566#1 length = 308 sequences # 1  
consensus_11566#2 length = 306 sequences # 1  

consensusID : consensus_11566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 937
fasta sequence
                              [TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC]

[-] EMBL C97865               [TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTNGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB684193             [                                                                                                                                      GCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAA                                                                                                                                                                                            ]
[-] EMBL AU172703             [                                                                                                                               tttttttGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCANAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCANAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCAT                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB684192             [                                                                                                                                                GGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTTCTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCATGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCCCTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTCTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCC                                                                                                                                                                                                    ]
[-] EMBL AK062542             [                                                                                                                                                  ACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTA                                                                                                                                                                                                                        ]
[-] EMBL OS0032A              [                                                                                                                                                                                                                                                                                GGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU172956             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGAAGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC]


>consensus_11566#0 TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAA ACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGC GAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGA GGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCAC ATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACC GAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCA GGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGG TATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCT GGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCA GCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCA AGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGT GTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTT AGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATT GATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCC ATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTG CACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC



consensusID : consensus_11566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC]

[-] EMBL AU029995             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC]


>consensus_11566#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANAN AAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACA CAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACA GAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCC CCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCG CCAGCCTC



consensusID : consensus_11566#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence
                              [TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC]

[-] EMBL BI813577             [TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC]


>consensus_11566#2 TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCC TGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAA GTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATT CACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAA CTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTG GTGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11566#0      TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAA 60
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      ACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGC 120
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC 39
                                                                                   

consensus_11566#0      GAGACACCACGACGGCGATAGAAAGGACCTTGACATTAG-GGTTCCACCAGGCCCAAATG 179
consensus_11566#2      ---------TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATG 51
consensus_11566#1      NANANACCACGACGGCGANANAAAGGACCTTGACATNAG-GGTTCCACCAGGCCCAAATG 98
                                     **** * *************** ** ********************

consensus_11566#0      AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 239
consensus_11566#2      AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 111
consensus_11566#1      AGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCA 158
                       **************** *************************** ***************

consensus_11566#0      CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 287
consensus_11566#2      CATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTG 171
consensus_11566#1      CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 206
                       *************** *******  **  ****    * *  ** *         ** **

consensus_11566#0      TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACTCCCAGAAGGG-----CCGTTTGCA 339
consensus_11566#2      TGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCA 231
consensus_11566#1      TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACCCCCAGAAGGG-----CCGTTTGCA 258
                       ** * ******** ****** ****** ******* ****  *  *     * *******

consensus_11566#0      GG--AGAAACG--TTGGA-GCTCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTCCC 391
consensus_11566#2      CGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCC 291
consensus_11566#1      GG--AGAAACG--TTGGA-GCNCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTC-- 308
                        *  ******    **** ** ***** ******* ********   * *********  

consensus_11566#0      CAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCG 451
consensus_11566#2      CAGCTCCTGGTGCAC--------------------------------------------- 306
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      CCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCG 511
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      ACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCAC 571
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      CACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATAC 631
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      TTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCAC 691
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      AGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATC 751
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      CATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGA 811
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      TGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACG 871
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      GTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAG 931
consensus_11566#2      ------------------------------------------------------------
consensus_11566#1      ------------------------------------------------------------
                                                                                   

consensus_11566#0      AGGTAC 937
consensus_11566#2      ------
consensus_11566#1      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)