These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 937 fasta sequence [TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC] [-] EMBL C97865 [TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTNGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAG ] [+] EMBL CB684193 [ GCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAA ] [-] EMBL AU172703 [ tttttttGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCANAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCANAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCAT ] [-] EMBL CB684192 [ GGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTTCTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCATGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCCCTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTCTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCC ] [-] EMBL AK062542 [ ACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTA ] [-] EMBL OS0032A [ GGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGG ] [-] EMBL AU172956 [ AGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGAAGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC] consensusID : consensus_11566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC] [-] EMBL AU029995 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC] consensusID : consensus_11566#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC] [-] EMBL BI813577 [TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11566#0 TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAA 60 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 ACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGC 120 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC 39 consensus_11566#0 GAGACACCACGACGGCGATAGAAAGGACCTTGACATTAG-GGTTCCACCAGGCCCAAATG 179 consensus_11566#2 ---------TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATG 51 consensus_11566#1 NANANACCACGACGGCGANANAAAGGACCTTGACATNAG-GGTTCCACCAGGCCCAAATG 98 **** * *************** ** ******************** consensus_11566#0 AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 239 consensus_11566#2 AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 111 consensus_11566#1 AGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCA 158 **************** *************************** *************** consensus_11566#0 CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 287 consensus_11566#2 CATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTG 171 consensus_11566#1 CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 206 *************** ******* ** **** * * ** * ** ** consensus_11566#0 TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACTCCCAGAAGGG-----CCGTTTGCA 339 consensus_11566#2 TGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCA 231 consensus_11566#1 TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACCCCCAGAAGGG-----CCGTTTGCA 258 ** * ******** ****** ****** ******* **** * * * ******* consensus_11566#0 GG--AGAAACG--TTGGA-GCTCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTCCC 391 consensus_11566#2 CGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCC 291 consensus_11566#1 GG--AGAAACG--TTGGA-GCNCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTC-- 308 * ****** **** ** ***** ******* ******** * ********* consensus_11566#0 CAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCG 451 consensus_11566#2 CAGCTCCTGGTGCAC--------------------------------------------- 306 consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 CCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCG 511 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 ACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCAC 571 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 CACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATAC 631 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 TTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCAC 691 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 AGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATC 751 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 CATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGA 811 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 TGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACG 871 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 GTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAG 931 consensus_11566#2 ------------------------------------------------------------ consensus_11566#1 ------------------------------------------------------------ consensus_11566#0 AGGTAC 937 consensus_11566#2 ------ consensus_11566#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||