cluster # 11573

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Oryza sativa
cluster # 11573 cluster # 11573 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11573#0 length = 962 sequences # 3

consensus_11573#1 length = 601 sequences # 5
consensus_11573#2 length = 127 sequences # 1

consensusID : consensus_11573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 962
fasta sequence

                              [ATGCCACTTCAAGGTTTGAAGGCTTTGAGTACAGCAAAAGCATGCTCAGGGAAGAGGTTGAGAGGTACAAAAGATTTGCAGAGCGCTTGGAGCCGTTCATTGCTGATACTGTTCATCTGTTGAATGAATCTATCCAACAGAAGAAGAAAATTCTGGTTGAAGGTGGTCAAGCAACAATGTTGGATATTGATTTTGGAACTTACCCATTTGTGACTTCTTCTAGCCCTTCAGCTGGTGGGATATGCACTGGCCTTGGGATTGCCCCAAGGTGTATTGGTGACCTGATTGGAGTGGTAAAAGCTTATACAACAAGGGTTGGTTCTGGGCCTTTTCCAACTGAACTGTTTGGAGAGGAAGGTGATCTCCTTAGGAAATCAGGAATGGAATTTGGGACGACAACAGGCCGCCCAAGGCGTTGTGGCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTAATCTGACCAAACTTGATGTTCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTTACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK066881             [ATGCCACTTCAAGGTTTGAAGGCTTTGAGTACAGCAAAAGCATGCTCAGGGAAGAGGTTGAGAGGTACAAAAGATTTGCAGAGCGCTTGGAGCCGTTCATTGCTGATACTGTTCATCTGTTGAATGAATCTATCCAACAGAAGAAGAAAATTCTGGTTGAAGGTGGTCAAGCAACAATGTTGGATATTGATTTTGGAACTTACCCATTTGTGACTTCTTCTAGCCCTTCAGCTGGTGGGATATGCACTGGCCTTGGGATTGCCCCAAGGTGTATTGGTGACCTGATTGGAGTGGTAAAAGCTTATACAACAAGGGTTGGTTCTGGGCCTTTTCCAACTGAACTGTTTGGAGAGGAAGGTGATCTCCTTAGGAAATCAGGAATGGAATTTGGGACGACAACAGGCCGCCCAAGGCGTTGTGGCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTAATCTGACCAAACTTGATGTTCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTTACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTT                    ]
[+] EMBL OS0501A              [                                                                                                                                                                                                                                                                                                                 ACAACAAGGGTTGGTTCTGGGCCTTTTCCAACTGAACTGTTTGGAGAGGAAGGTGATCTCCTTAGGAAATCAGGAATGGAATTTGGGACGACAACAGGCCGCCCAAGGCGTTGTGGCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTAATCTGACCAAACTTGATGTTCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTTACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCT                                                                                                                                                                                                                                                          ]
[+] EMBL AU197604             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11573#0
ATGCCACTTCAAGGTTTGAAGGCTTTGAGTACAGCAAAAGCATGCTCAGGGAAGAGGTTG
AGAGGTACAAAAGATTTGCAGAGCGCTTGGAGCCGTTCATTGCTGATACTGTTCATCTGT
TGAATGAATCTATCCAACAGAAGAAGAAAATTCTGGTTGAAGGTGGTCAAGCAACAATGT
TGGATATTGATTTTGGAACTTACCCATTTGTGACTTCTTCTAGCCCTTCAGCTGGTGGGA
TATGCACTGGCCTTGGGATTGCCCCAAGGTGTATTGGTGACCTGATTGGAGTGGTAAAAG
CTTATACAACAAGGGTTGGTTCTGGGCCTTTTCCAACTGAACTGTTTGGAGAGGAAGGTG
ATCTCCTTAGGAAATCAGGAATGGAATTTGGGACGACAACAGGCCGCCCAAGGCGTTGTG
GCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTA
ATCTGACCAAACTTGATGTTCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATA
ACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAG
TACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTT
ACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTG
TTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGC
AACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGAC
GCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGAC
TGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTAAAAAAAAAAAAAAAAAA
AA

consensusID : consensus_11573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 601
fasta sequence

                              [CANCTCTTAATCTGNCCAAACTTGATGTTCTGTCTGGATTACCNGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTTNCAGTGANCTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTCCAAGACGTCAACAATGATGCAATAATTTTGGGTTGCTTTNTAGTNTTTATCTTTTGNNTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU068234             [CANCTCTTAATCTGNCCAAACTTGATGTTCTGTCTGGATTACCNGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTTNCAGTGANCTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTCCAAGACGTCAACAATGATGCAATAATTTTGGGTTGCTTTATAGTaaaaaaaaa                                                                            ]
[+] EMBL OSR14922A            [                                                                                                                                                                                                                                                   TTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATNAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAA                                                                                                                                                  ]
[+] EMBL AU095083             [                                                                                                                                                                                                                                                       TGTTCCAGTCCNCTACATTGGTGTTGGNCCTGGGNGGGATGCTCTAATNTACAAGTAAAAGCAACNCCATTTGGTCATCAATTGANCCAAAATNTTTCAGCCCTAACTTGGCCTTGNGCGACGCTCATCAGTNTTTNCCGCTATTTCGTTGGTNCCTGTAATACNTGGGAAAAGCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTNTAAGAATNTTCCAAGNCGTCAACAATGATGCAATAATTTTGGGTTGCTTTNTNGTNTTTNTCTTTTGNNTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI795101             [                                                                                                                                                                                                                                                                                                                                   ATCAATTGAACC AAATATTTCAGCCCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGACTGGTAATGTGATGC ATTGCCTGCA  AA TCT AG  TCTTCCAAGACGTCAAAAA                                                                                                                   ]
[+] EMBL AU095033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATNCAATTGCCTGCAATAATTTTAAGAATNTTCCAAGNCGTNAACANTGATGCAATAATTTTGGGTTGCTTTNTAGTNTTTATCTTTTGNNTTTNAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11573#1
CANCTCTTAATCTGNCCAAACTTGATGTTCTGTCTGGATTACCNGAAGTTAAGCTGGGGG
TTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTC
TGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTG
TCCGGAGTTNCAGTGANCTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGC
TTGTTGGTGTTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACA
AGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCC
TTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAA
GCTACTGACTGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTCCAAGACGT
CAACAATGATGCAATAATTTTGGGTTGCTTTNTAGTNTTTATCTTTTGNNTTTNAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

consensusID : consensus_11573#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [GATGCAATTGCCTGCAATAATTCTTAGAATCTTCCAAGACGTCAACAATGATGCAATAATTTTGGGTTGCTTTATAGTATTTATCTTTTGACTTTACTTGTTTGGTGCTATAGACCCCCTATATTCT]

[+] EMBL D42755               [GATGCAATTGCCTGCAATAATTCTTAGAATCTTCCAAGACGTCAACAATGATGCAATAATTTTGGGTTGCTTTATAGTATTTATCTTTTGACTTTACTTGTTTGGTGCTATAGACCCCCTATATTCT]




>consensus_11573#2
GATGCAATTGCCTGCAATAATTCTTAGAATCTTCCAAGACGTCAACAATGATGCAATAAT
TTTGGGTTGCTTTATAGTATTTATCTTTTGACTTTACTTGTTTGGTGCTATAGACCCCCT
ATATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11573#0      ATGCCACTTCAAGGTTTGAAGGCTTTGAGTACAGCAAAAGCATGCTCAGGGAAGAGGTTG 60
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      AGAGGTACAAAAGATTTGCAGAGCGCTTGGAGCCGTTCATTGCTGATACTGTTCATCTGT 120
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      TGAATGAATCTATCCAACAGAAGAAGAAAATTCTGGTTGAAGGTGGTCAAGCAACAATGT 180
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      TGGATATTGATTTTGGAACTTACCCATTTGTGACTTCTTCTAGCCCTTCAGCTGGTGGGA 240
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      TATGCACTGGCCTTGGGATTGCCCCAAGGTGTATTGGTGACCTGATTGGAGTGGTAAAAG 300
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      CTTATACAACAAGGGTTGGTTCTGGGCCTTTTCCAACTGAACTGTTTGGAGAGGAAGGTG 360
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      ATCTCCTTAGGAAATCAGGAATGGAATTTGGGACGACAACAGGCCGCCCAAGGCGTTGTG 420
consensus_11573#1      ------------------------------------------------------------
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      GCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTA 480
consensus_11573#1      ---------------------------------------------------CANCTCTTA 9
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      ATCTGACCAAACTTGATGTTCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATA 540
consensus_11573#1      ATCTGNCCAAACTTGATGTTCTGTCTGGATTACCNGAAGTTAAGCTGGGGGTTTCTTATA 69
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      ACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAG 600
consensus_11573#1      ACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGGATCTTGATACTCTGGAGCAAG 129
consensus_11573#2      --------GATGCA-ATTGCCTGCAATAATTCTTAGAATCTTCCAAGACGTC--AACAAT 49
                               ****   *    ** ****  ***  **    *    * **     * *** 

consensus_11573#0      TACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTT 660
consensus_11573#1      TACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGTT 189
consensus_11573#2      GATGCAATAATTTTGGGTTGCTTTATAGTATTTATCTTTTGACTTTACTTGTTTGGTGCT 109
                        *      ** * ** * ** *   * *     *   *   * **    ***  ** * *

consensus_11573#0      ACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTG 720
consensus_11573#1      NCAGTGANCTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTG 249
consensus_11573#2      ATAG---ACCCCCTATATTCT--------------------------------------- 127
                         **    *  **  **                                           

consensus_11573#0      TTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGC 780
consensus_11573#1      TTCCAGTCCACTACATTGGTGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGC 309
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      AACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGAC 840
consensus_11573#1      AACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGCCCTAACTTGGCCTTGAGCGAC 369
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      GCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGAC 900
consensus_11573#1      GCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAATACATGGGAAAAGCTACTGAC 429
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      TGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTAAAAAAAAAAAAAAAAAA 960
consensus_11573#1      TGGTAATGTGATGCAATTGCCTGCAATAATTCTAAGAATCTTCCAAGACGTCAACAATGA 489
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      AA---------------------------------------------------------- 962
consensus_11573#1      TGCAATAATTTTGGGTTGCTTTNTAGTNTTTATCTTTTGNNTTTNAAAAAAAAAAAAAAA 549
consensus_11573#2      ------------------------------------------------------------
                                                                                   

consensus_11573#0      ----------------------------------------------------
consensus_11573#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 601
consensus_11573#2      ----------------------------------------------------