Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11593 cluster # 11593       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11593#0 length = 1451 sequences # 8  
consensus_11593#1 length = 486 sequences # 1  

consensusID : consensus_11593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1451
fasta sequence
                              [GCCCGAAGTCCCAAG-GCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGGCCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGCGAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGACTACCGCAGCGGCAGCAACAGCAGCAGCGTCAACAGCTGCTACAATTACAACCGCAAGGACGGCGCCGCGACGGAAGCGTCTGTCGTCGGCGGCAGCGACAATGGCGAGTGGTGGTGGCGCGCGCCGGGCGCCACCACCGCCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAAGAAACCTTCTCTCGTGACCGGACACGGAGAAAGATCGAACAACTTGTGCTGCTACCACTAAAAAAAGGA]

[+] EMBL AK109941             [GCCCGAAGTCCCAAG GCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTTGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGGCCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGCGAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGACTACCGCAGCGGCAGCAACAGCAGCAGCGTCAACAGCTGCTACAATTACAACCGCAAGGACGGCGCCGCGACGGAAGCGTCTGTCGTCGGCGGCAGCGACAATGGCGAGTGGTGGTGGCGCGCGCCGGGCGCCACCACCGCCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAG                                                                                                           ]
[+] EMBL CB650472             [   CGAAGTCCCAAG GCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB650405             [   CGAAGCCCTAAGAGGTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCCCCAAAGGAAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGGCCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGCGAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB650630             [                GCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGGCCGGTTCGCGAGGAACGGCGAGGCCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB648460             [                 CTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTCCTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCCGGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGACGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTCGCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCATCAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTTCTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCCGTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTTCAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGGCGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGCCGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAACAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGGCCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGCGAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGACTACCGCAGCGGCAGCAACAGCAGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB648461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAAGAAACCTTCTCTCGTGACCGGACACGGAGAAAGATCGAACAACTTGTGCTGCTACCACTAAAAAAAGGA]
[-] EMBL CB650406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAA                                                                                   ]
[-] EMBL CB650631             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAAGAAACCTTCTCTCGTGACCGGACACTGAGAAAGATCGAACAACTTGTGCT                   ]


>consensus_11593#0 GCCCGAAGTCCCAAGGCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTC CTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCC GGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGA CGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTC GCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCAT CAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTT CTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCC GTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTT CAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGG CGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGC CGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAA CAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGG CCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGC GAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGACTACCGCAGCGGCAGCAACAG CAGCAGCGTCAACAGCTGCTACAATTACAACCGCAAGGACGGCGCCGCGACGGAAGCGTC TGTCGTCGGCGGCAGCGACAATGGCGAGTGGTGGTGGCGCGCGCCGGGCGCCACCACCGC CGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCT CGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAG CGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTG GGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGG CGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAG GAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAA CTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAA AAGAAACCTTCTCTCGTGACCGGACACGGAGAAAGATCGAACAACTTGTGCTGCTACCAC TAAAAAAAGGA



consensusID : consensus_11593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [ATGTGAACTAGAAGAGTGCGCCAGAGGAAGAGGACGGCGATGATTACACCACCGCCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTAGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCCCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGAAGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAATAAAAAGGA]

[-] EMBL CB650473             [ATGTGAACTAGAAGAGTGCGCCAGAGGAAGAGGACGGCGATGATTACACCACCGCCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCGACATGCTGTCCGTGAACCTCGCCTAGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCCCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGAAGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAATAAAAAGGA]


>consensus_11593#1 ATGTGAACTAGAAGAGTGCGCCAGAGGAAGAGGACGGCGATGATTACACCACCGCCGAGG CGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCCTCGGCG ACATGCTGTCCGTGAACCTCGCCTAGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAAC GATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGTGGGGTC CGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGGGCGGGC GACCGGTGCGCAGCGTAGTGGTGCGCCAGCCCCAGTGTGCAGCGCGCGAGAGGAGGAGGT CAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTC GCCAGAAACATCATGAAAGAAGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAAAAATAA AAAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11593#0      GCCCGAAGTCCCAAGGCTTTTTTTACGTCCAAATTAAAAAGAAGCCATGTTCCGCCATTC 60
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CTCCTCTGCCTCGTCGGCGGCCTCCTACGGCAGCGACGTCAGCTTCATGAACCACTCGCC 120
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      GGCGGCCGCCTTGCCCGCCGTCCCGACGCAGATCCCTCGCGTCGCCGGCGGCTACCTCGA 180
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CGGCAATGTTAGCGGCGGGTTACCTCACTTCGGAGGGGCGGTGTCGTCGTCGTCGTCGTC 240
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      GCCGCCGTCCTACTCCTCGTCGCTCCCTTCGTCCTACTACAACAACATCCAGAGGAGCAT 300
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CAGCTCGCACTCCCTCCCGCATCACCTCCAGCTCACCGACCACTTCGGCGGCGCATTCTT 360
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CTCGTCGTCGTCCTCCTCCTCCCACCAGCTGCCTCTGCCGCCGCCGCTCTCCTCCTCGCC 420
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      GTCCTCCTCCTCTGGCGACCTCTTCGAGTTCACCTCGCCATGCCCCGTCCGCCGCGTCTT 480
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CAGCACCGGCGACCTCCAGGGGATGAACGGATCGTCGCCGCCGCGGCCGCTCCCGTCCGG 540
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CGAAAGCTGCGGGCAAGACGGCAGCGGGCCATTCTCACAGAAGGTCGGGCGGTACAGTGC 600
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CGAGGAGAGGAAGGAGAGGATCGAGAGGTATCGCGTGAAGCGGCATCAACGCAACTTCAA 660
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CAAGAAGATCACTTACGCGTGCAGGAAGACGCTGGCGGATAGCCGGCCGAGGGTGAAAGG 720
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CCGGTTCGCGAGGAACGGCGAGGCCGACGCGGAGGGCGACGAGCGGGAGGCGTTCGACGC 780
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      GAGCTACAGCTACGACTACTCCGCCGCGGGCTACAGCGACTACCGCAGCGGCAGCAACAG 840
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      CAGCAGCGTCAACAGCTGCTACAATTACAACCGCAAGGACGGCGCCGCGACGGAAGCGTC 900
consensus_11593#1      ------------------------------------------------------------
                                                                                   

consensus_11593#0      TGTCGTCGGCGGCAGCGACAATG-GCGAGTGGTGGTGGCGCGCGCCGGGCGCCACCACCG 959
consensus_11593#1      -----ATGTGAACTAGAAGAGTGCGCCAGAGGAAGAGGACGGCGATGATTAC-ACCACCG 54
                              *    *    * * ** ** ** **  * **   ***  *    * *******

consensus_11593#0      CCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCC 1019
consensus_11593#1      CCGAGGCGGAGCGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGATATGGGCCACCC 114
                       ************************************************************

consensus_11593#0      TCGGCGACATGCTGTCCGTGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGA 1079
consensus_11593#1      TCGGCGACATGCTGTCCGTGAACCTCGCCTAGTAGTACGCTGTCGCCGCCGATCAGGGGA 174
                       ****************************** *****************************

consensus_11593#0      GCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGT 1139
consensus_11593#1      GCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCCGGCGTCGTTGTTGGTGGTCGGT 234
                       ************************************************************

consensus_11593#0      GGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGG 1199
consensus_11593#1      GGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGCGG 294
                       ************************************************************

consensus_11593#0      GCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGA 1259
consensus_11593#1      GCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCCCCAGTGTGCAGCGCGCGAGAGGA 354
                       ************************************ ***********************

consensus_11593#0      GGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTA 1319
consensus_11593#1      GGAGGTCAGGTCAGGTCAGAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTA 414
                       ************************************************************

consensus_11593#0      ACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAA 1379
consensus_11593#1      ACTTTCGCCAGAAACATCATGAAAGAAGGGAAACGAAAAAAAAGAAAAAAAGAGGGACAA 474
                       *************************  *********************************

consensus_11593#0      AAAGAAACCTTCTCTCGTGACCGGACACGGAGAAAGATCGAACAACTTGTGCTGCTACCA 1439
consensus_11593#1      AAATAAAAAGGA------------------------------------------------ 486
                       *** ***                                                     

consensus_11593#0      CTAAAAAAAGGA 1451
consensus_11593#1      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)