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Oryza sativa
cluster # 11599 cluster # 11599       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11599#0 length = 2067 sequences # 5  
consensus_11599#1 length = 698 sequences # 2  
consensus_11599#2 length = 437 sequences # 1  
consensus_11599#3 length = 261 sequences # 1  

consensusID : consensus_11599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2067
fasta sequence
                              [TTGCAGTTACAACCGGCAAACCTCTCGCGACCCTGCACCGTAGCAGCGTCGACGCGAGGCGGACAGCCTCTTCTTCCTCCTCCCTTTCCACCCCCCACAGAGATCTCGCCTCTCTCCTCCTCCCTTTCCCTCTCCTTCCTTCCAGATCTCTCCACGCGCCGCCCCGATCTCTTCCCCCCACCCCCACCTCGTCACCGGCGGGGAGGAGGGCCCGGCCGCCGGCAGCCATGATCTCCTCCAGTAAGCTCAAGTCCGTCGACTTCTACAGGAAAATTCCTAGGGATTTGACCGAGGCATCACTATCTGGGGCTGGATTGTCCATTGTAGCAGCACTAGCTATGGTGTTTTTGTTTGGAATGGAACTGAGTAATTACTTAGCAGTCAATACTAGCACATCTGTGATTGTTGATAGGAGTTCAGATGGGGAGTTCTTACGGATAGATTTTAACTTAAGCTTTCCTGCGCTTTCATGCGAATTTGCATCAGTTGATGTCAGTGATGTTCTGGGAACAAACAGATTGAACATAACGAAAACTGTTCGCAAATATTCAATTGATCGGAATTTAGTGCCTACTGGATCCGAGTTCCACCCAGGACCTATTCCTACGGTCAGCAAACATGGAGATGATGTTGAAGAAAACCATGATGATGGTTCAGTTCCCTTGTCCTCTCGCAATTTTGATAGCTATTCACACCAGTATCCTGTTTTGGTTGTTAATTTTTATGCCCCCTGGTGTTACTGGAGCAATCGATTGAAACCTTCGTGGGAGAAGACTGCAAAAATAATGAGGGAGAGATATGATCCTGAAATGGATGGCAGAATCATTCTTGCCAAGGTTGACTGCACTGAAGAAATTGACTTGTGTAGGAGGCACCATATACAAGGTTATCCATCCATTCGCATTTTCCGTAAAGGGAGTGATCTTAAGGAAAACCAGGGTCACCATGATCATGAATCATACTACGGCGATCGTGATACTGAGAGTTTAGTAGCGGCAATGGAAACTTATGTTGCAAACATCCCAAAAGATGCCCATGTTCTAGCTTTGGAGGACAAATCCAATAAGACTGTTGATCCTGCAAAACGCCCTGCTCCATTGACCAGTGGATGCAGAATAGAAGGTTTTGTGCGGGTAAAAAAGGTCCCTGGGAGTGTTGTAATCTCAGCTCGATCTGGTTCCCACTCCTTTGATCCATCCCAGATAAATGTTTCCCACTATGTAACACAGTTCTCTTTTGGCAAAAGGCTATCGGCAAAGATGTTTAATGAACTGAAAAGACTAACTCCCTATGTTGGTGGCCACCATGATAGATTAGCTGGTCAATCCTACATTGTTAAGCATGGTGATGTCAATGCCAACGTTACTATTGAGCATTACCTGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATACACAGCGC-ACAGCAGCTTGGTGCACAGCTT-CTATGTTCCTGTT-GTGAAATTCCATT--TTGAACCTTCT-CCCATGCAGGTCTT-GGT-AACTGAACTTCCAAAATCCTT-CTCC--CATTTCATCACAAATGTTTGTGCTAT-CATTGGAGGAGTTT-TCACGGTTGCTGGAATACT-GGATTCCATCT-TCCACAAC-ACCTTGCGGCT-GGTTAAGAA-GGTCGAGCTTGGGAAGAACATTT-GAACAACAAGATTAATCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTAT-TTTGTTATACCA-GGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGG-TAGTGGGTTGGCAGAGGAGGAGAAG-TTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTC-GTAAGAACAATAATACAGTGGATCCTTGTTAACTATACCCTACG-TTAATTCGTCCAGACTATGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCACATGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTTATTTACGGTAACCAGAATTTTTAAGTTCAAAAAAAAAAAAAA]

[+] EMBL AK099660             [TTGCAGTTACAACCGGCAAACCTCTCGCGACCCTGCACCGTAGCAGCGTCGACGCGAGGCGGACAGCCTCTTCTTCCTCCTCCCTTTCCACCCCCCACAGAGATCTCGCCTCTCTCCTCCTCCCTTTCCCTCTCCTTCCTTCCAGATCTCTCCACGCGCCGCCCCGATCTCTTCCCCCCACCCCCACCTCGTCACCGGCGGGGAGGAGGGCCCGGCCGCCGGCAGCCATGATCTCCTCCAGTAAGCTCAAGTCCGTCGACTTCTACAGGAAAATTCCTAGGGATTTGACCGAGGCATCACTATCTGGGGCTGGATTGTCCATTGTAGCAGCACTAGCTATGGTGTTTTTGTTTGGAATGGAACTGAGTAATTACTTAGCAGTCAATACTAGCACATCTGTGATTGTTGATAGGAGTTCAGATGGGGAGTTCTTACGGATAGATTTTAACTTAAGCTTTCCTGCGCTTTCATGCGAATTTGCATCAGTTGATGTCAGTGATGTTCTGGGAACAAACAGATTGAACATAACGAAAACTGTTCGCAAATATTCAATTGATCGGAATTTAGTGCCTACTGGATCCGAGTTCCACCCAGGACCTATTCCTACGGTCAGCAAACATGGAGATGATGTTGAAGAAAACCATGATGATGGTTCAGTTCCCTTGTCCTCTCGCAATTTTGATAGCTATTCACACCAGTATCCTGTTTTGGTTGTTAATTTTTATGCCCCCTGGTGTTACTGGAGCAATCGATTGAAACCTTCGTGGGAGAAGACTGCAAAAATAATGAGGGAGAGATATGATCCTGAAATGGATGGCAGAATCATTCTTGCCAAGGTTGACTGCACTGAAGAAATTGACTTGTGTAGGAGGCACCATATACAAGGTTATCCATCCATTCGCATTTTCCGTAAAGGGAGTGATCTTAAGGAAAACCAGGGTCACCATGATCATGAATCATACTACGGCGATCGTGATACTGAGAGTTTAGTAGCGGCAATGGAAACTTATGTTGCAAACATCCCAAAAGATGCCCATGTTCTAGCTTTGGAGGACAAATCCAATAAGACTGTTGATCCTGCAAAACGCCCTGCTCCATTGACCAGTGGATGCAGAATAGAAGGTTTTGTGCGGGTAAAAAAGGTCCCTGGGAGTGTTGTAATCTCAGCTCGATCTGGTTCCCACTCCTTTGATCCATCCCAGATAAATGTTTCCCACTATGTAACACAGTTCTCTTTTGGCAAAAGGCTATCGGCAAAGATGTTTAATGAACTGAAAAGACTAACTCCCTATGTTGGTGGCCACCATGATAGATTAGCTGGTCAATCCTACATTGTTAAGCATGGTGATGTCAATGCCAACGTTACTATTGAGCATTACCTGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATACACAGCGC ACAGCAGCTTGGTGCACAGCTT CTATGTTCCTGTT GTGAAATTCCATT  TTGAACCTTCT CCCATGCAGGTCTT GGT AACTGAACTTCCAAAATCCTT CTCC  CATTTCATCACAAATGTTTGTGCTAT CATTGGAGGAGTTT TCACGGTTGCTGGAATACT GGATTCCATCT TCCACAAC ACCTTGCGGCT GGTTAAGAA GGTCGAGCTTGGGAAGAACATTT GAACAACAAGATTATTCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTAT TTTGTTATACCA GGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGG TAGTGGGTTGGCAGAGGAGGAGAAG TTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTC GTAAGAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACG T                                                                                                                                           ]
[+] EMBL D43363               [                                                                                                                                         CCTTCCAGATCTCTCCACGCGCCGCCCCGATCTCTTCCCCCCACCCCCACCTCGTCACCGGCGGGGAGGAGGGCCCGGCCGCCGGCAGCCATGATCTCCTCCAGTAAGCTCAAGTCCGTCGACTTCTACAGGAAAATTCCTAGGGATTTGACCGAGGCATCACTATCTGGGGCTGGATTGTCCATTGTAGCAGCACTAGCTATGGTGTTTTTGTTTGGAATGGAACTGAGTAATTACTTAGCAGTCAATACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OS0451A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCAATGCCAACGTTACTATTGAGCATTACCTGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATACACAGCGC ACAGCAGCTTGGTGCACAGCTT CTATGTTCCTGTT GTGAAATTCCATT  TTGAACCTTCT CCCATGCAGGTCTT GGT AACTGAACTTCCAAAATCCTT CTCC  CATTTCATCACAAATGTTTGTGCTAT CATTGGAGGAGTTT TCACGGTTGCTGGAATACTGGGATTCCATCT TNCACAACAACTTTGCGGCT GGTTAAGAAGGGTCGAGCTTGGGAAGGNCATTT GAACAACAn                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA762618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATACACAGCGC ACAGCAGCTTGGTGCACAGNTT CTATGTTCCTGTT GTGAAATTCCATT  TTGAACCTTCT CCCATGCAGGTCTT GGT AACTGAACTTCCAAAATCCTT CTCT  CATTTCATCACAAATGTTTGTGCTAT CATTGGAGGAGTTT TCACGGTTGCTGGAATACT GGATTCCATCT TCCACAAC ACCTTGCGGCT GGTTAAGAA GGTCGAGCTTGGGAAGAACATTT GAACAACAAAATTAATCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTAT TTTGTTATACCA GGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGG TAGTGGGTTGGCAGAGGAGGAGAAG TTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTT GTAAGAACAATAATACAGTGGATCCTTGTTAACTATACCCTACG TTAATTCGTCCAGACTATGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCACATGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTTATTTACGGTAACCAGAATTTTTAAGTTCAAAAAAAAAAAAAA]
[+] EMBL BQ906624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAATACACAGCGCAACAGCAGCTTGGTGCACAGCTTGCTATGTTCCTGTTCGTGAAATTCCATTCGTGGAACCTTCTGCCCATGCAGGTCTTGGGTGAACTGAACTTCCCAAATCCTTGCTGCTGCATTTCATCACAAATGTTTGTGCTATGCATTGGAGGAGTTTGTCACGGTTGCTGGAATACT GGATTCCATCTGTCCACAAC ACCTTGCGGCTAGGTTAAGAA GGTCGAGCTTGGGAAGAACATTTGGAACAACAA ATTAATCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATCTTTGTTATACCACGGGTAGGAATTCNTAATATATCAAGATGTGAAAGAGGGCTAGTGGGTTGGCAGAGGAGGAGAAGCTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCTGTAAGAAC ATAATACAGTGGATCCTTGTTAACTATACCCTACGNNTAATTCGTCCAGACTATGTGTTGTGTTAaaaa                                                                                                           ]


>consensus_11599#0 TTGCAGTTACAACCGGCAAACCTCTCGCGACCCTGCACCGTAGCAGCGTCGACGCGAGGC GGACAGCCTCTTCTTCCTCCTCCCTTTCCACCCCCCACAGAGATCTCGCCTCTCTCCTCC TCCCTTTCCCTCTCCTTCCTTCCAGATCTCTCCACGCGCCGCCCCGATCTCTTCCCCCCA CCCCCACCTCGTCACCGGCGGGGAGGAGGGCCCGGCCGCCGGCAGCCATGATCTCCTCCA GTAAGCTCAAGTCCGTCGACTTCTACAGGAAAATTCCTAGGGATTTGACCGAGGCATCAC TATCTGGGGCTGGATTGTCCATTGTAGCAGCACTAGCTATGGTGTTTTTGTTTGGAATGG AACTGAGTAATTACTTAGCAGTCAATACTAGCACATCTGTGATTGTTGATAGGAGTTCAG ATGGGGAGTTCTTACGGATAGATTTTAACTTAAGCTTTCCTGCGCTTTCATGCGAATTTG CATCAGTTGATGTCAGTGATGTTCTGGGAACAAACAGATTGAACATAACGAAAACTGTTC GCAAATATTCAATTGATCGGAATTTAGTGCCTACTGGATCCGAGTTCCACCCAGGACCTA TTCCTACGGTCAGCAAACATGGAGATGATGTTGAAGAAAACCATGATGATGGTTCAGTTC CCTTGTCCTCTCGCAATTTTGATAGCTATTCACACCAGTATCCTGTTTTGGTTGTTAATT TTTATGCCCCCTGGTGTTACTGGAGCAATCGATTGAAACCTTCGTGGGAGAAGACTGCAA AAATAATGAGGGAGAGATATGATCCTGAAATGGATGGCAGAATCATTCTTGCCAAGGTTG ACTGCACTGAAGAAATTGACTTGTGTAGGAGGCACCATATACAAGGTTATCCATCCATTC GCATTTTCCGTAAAGGGAGTGATCTTAAGGAAAACCAGGGTCACCATGATCATGAATCAT ACTACGGCGATCGTGATACTGAGAGTTTAGTAGCGGCAATGGAAACTTATGTTGCAAACA TCCCAAAAGATGCCCATGTTCTAGCTTTGGAGGACAAATCCAATAAGACTGTTGATCCTG CAAAACGCCCTGCTCCATTGACCAGTGGATGCAGAATAGAAGGTTTTGTGCGGGTAAAAA AGGTCCCTGGGAGTGTTGTAATCTCAGCTCGATCTGGTTCCCACTCCTTTGATCCATCCC AGATAAATGTTTCCCACTATGTAACACAGTTCTCTTTTGGCAAAAGGCTATCGGCAAAGA TGTTTAATGAACTGAAAAGACTAACTCCCTATGTTGGTGGCCACCATGATAGATTAGCTG GTCAATCCTACATTGTTAAGCATGGTGATGTCAATGCCAACGTTACTATTGAGCATTACC TGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTG AGGAGTATGAATACACAGCGCACAGCAGCTTGGTGCACAGCTTCTATGTTCCTGTTGTGA AATTCCATTTTGAACCTTCTCCCATGCAGGTCTTGGTAACTGAACTTCCAAAATCCTTCT CCCATTTCATCACAAATGTTTGTGCTATCATTGGAGGAGTTTTCACGGTTGCTGGAATAC TGGATTCCATCTTCCACAACACCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAACA TTTGAACAACAAGATTAATCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTA GTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTA GTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACC TCACTGTTTTGCTAAACGACTTCGTAAGAACAATAATACAGTGGATCCTTGTTAACTATA CCCTACGTTAATTCGTCCAGACTATGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCAC ATGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTTATTTACGGTAACCAG AATTTTTAAGTTCAAAAAAAAAAAAAA



consensusID : consensus_11599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence
                              [TTCCNNCTCACCTTAGGGCCAATTGGGTCCCGGCCCCCCCTCGAGTCGACCCACGCNTCCNATGGTGATNCCAATCCCAACGTTACTATTGAGCATTNCCNGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATCCACAGCNCACANCAGCTTGGTGCACAGCTTCTATGTNCCTGTTGTGAAATNCCATTTTGAACCTTCTCCCATGCAGGTCTTGGTAACTGAACTTCCAAAANCCTTCTCCCATTTCATCACAAATGTTTGTNCTATCATTGGAGGNGTTTTCNCGGTTNCTGGAATACTGGATTCCATCTTCCACAACNCCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAACATTTGAACAACAAGATTATTCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATTTTGTTATACCNGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAGAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACGTTAATTCGTCCAGACTTGTGTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98047               [TTCCNNCTCACCTTAGGGCCAATTGGGTCCCGGCCCCCCCTCGAGTCGACCCACGCNTCCNATGGTGATNCCAATCCCAACGTTACTATTGAGCATTNCCNGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATCCACAGCNCACANCAGCTTGGTGCACAGCTTCTATGTNCCTGTTGTGAAATNCCATTTTGAACCTTCTCCCATGCAGGTCTTGGTAACTGAACTTCCAAAANCCTTCTCCCATTTCATCACAAATGTTTGTNCTATCATTGGAGGNGTTTTCNCGGTTNCTGGAATACTGGATTCCATCTTCCACAACNCCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAACATTTGAACAACAAGATTATTCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATTTTGTTATACCNGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAGAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACGTTAATTCGTCCAGACTTGTGTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB964588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAGATGTGAAAGAGGGTAGTGGGTTGGCA   GAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAGAACANTAAGACAGTGGATCCTTGTTAACTATACCCTACGTT                                                 ]


>consensus_11599#1 TTCCNNCTCACCTTAGGGCCAATTGGGTCCCGGCCCCCCCTCGAGTCGACCCACGCNTCC NATGGTGATNCCAATCCCAACGTTACTATTGAGCATTNCCNGCAAATTGTGAAAACTGAG CTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTTGAGGAGTATGAATCCACAGCN CACANCAGCTTGGTGCACAGCTTCTATGTNCCTGTTGTGAAATNCCATTTTGAACCTTCT CCCATGCAGGTCTTGGTAACTGAACTTCCAAAANCCTTCTCCCATTTCATCACAAATGTT TGTNCTATCATTGGAGGNGTTTTCNCGGTTNCTGGAATACTGGATTCCATCTTCCACAAC NCCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAACATTTGAACAACAAGATTATTC TTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATTTTGTTATACCN GGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAG AAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGAC TTCGTAAGAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACGTTAATTCGTCCAG ACTTGTGTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11599#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAAAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACGTTAATTCGTCCAGACTTGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCACCTGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTCATCTACGGTAACCAGAATTTTTAAGTTCGCTTAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGGCCGCCACCGCGGGG]

[-] EMBL OSA420730            [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTAGTGGTTGCACTAGTTTTAGTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAAAACAATAAGACAGTGGATCCTTGTTAACTATACCCTACGTTAATTCGTCCAGACTTGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCACCTGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTCATCTACGGTAACCAGAATTTTTAAGTTCGCTTAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGGCCGCCACCGCGGGG]


>consensus_11599#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTAGT GGTTGCACTAGTTTTAGTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAA GATGTGAAAGAGGGTAGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTA ATAGTAGGTAGGGACCTCACTGTTTTGCTAAACGACTTCGTAAAAACAATAAGACAGTGG ATCCTTGTTAACTATACCCTACGTTAATTCGTCCAGACTTGTGTTGTGTTACTCTGTTTA CTGTTGTGATGGCACCTGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTC ATCTACGGTAACCAGAATTTTTAAGTTCGCTTAAAAAAAAAAAAAAAAAAAAAAGCTTGC GGGCCGCCACCGCGGGG



consensusID : consensus_11599#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence
                              [CGCTGTTAAGAAGTTCGAGCTTGGGAAGAACATTGGAACCAAATTAATCTTCAGAACCACCTCAAGCTTAGTGTCCACTATTTTAGTCATATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGTTAGTGGTTGCCAGAGGAGGAGAATTTGGGTTCATGATATATAGTAATAGTAGTAGGCCCTCCTGTTTGCTAACCGACTTCGTAAGACCATAACCAGTGGACCTGGTAACTAAAAAAAAA]

[+] EMBL BI804467             [CGCTGTTAAGAAGTTCGAGCTTGGGAAGAACATTGGAACCAAATTAATCTTCAGAACCACCTCAAGCTTAGTGTCCACTATTTTAGTCATATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGTTAGTGGTTGCCAGAGGAGGAGAATTTGGGTTCATGATATATAGTAATAGTAGTAGGCCCTCCTGTTTGCTAACCGACTTCGTAAGACCATAACCAGTGGACCTGGTAACTAAAAAAAAA]


>consensus_11599#3 CGCTGTTAAGAAGTTCGAGCTTGGGAAGAACATTGGAACCAAATTAATCTTCAGAACCAC CTCAAGCTTAGTGTCCACTATTTTAGTCATATTTTGTTATACCAGGGTAGGAATTCTTAA TATATCAAGATGTGAAAGAGGTTAGTGGTTGCCAGAGGAGGAGAATTTGGGTTCATGATA TATAGTAATAGTAGTAGGCCCTCCTGTTTGCTAACCGACTTCGTAAGACCATAACCAGTG GACCTGGTAACTAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TTGCAGTTACAACCGGCAAACCTCTCGCGACCCTGCACCGTAGCAGCGTCGACGCGAGGC 60
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GGACAGCCTCTTCTTCCTCCTCCCTTTCCACCCCCCACAGAGATCTCGCCTCTCTCCTCC 120
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TCCCTTTCCCTCTCCTTCCTTCCAGATCTCTCCACGCGCCGCCCCGATCTCTTCCCCCCA 180
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CCCCCACCTCGTCACCGGCGGGGAGGAGGGCCCGGCCGCCGGCAGCCATGATCTCCTCCA 240
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GTAAGCTCAAGTCCGTCGACTTCTACAGGAAAATTCCTAGGGATTTGACCGAGGCATCAC 300
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TATCTGGGGCTGGATTGTCCATTGTAGCAGCACTAGCTATGGTGTTTTTGTTTGGAATGG 360
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      AACTGAGTAATTACTTAGCAGTCAATACTAGCACATCTGTGATTGTTGATAGGAGTTCAG 420
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      ATGGGGAGTTCTTACGGATAGATTTTAACTTAAGCTTTCCTGCGCTTTCATGCGAATTTG 480
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CATCAGTTGATGTCAGTGATGTTCTGGGAACAAACAGATTGAACATAACGAAAACTGTTC 540
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GCAAATATTCAATTGATCGGAATTTAGTGCCTACTGGATCCGAGTTCCACCCAGGACCTA 600
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TTCCTACGGTCAGCAAACATGGAGATGATGTTGAAGAAAACCATGATGATGGTTCAGTTC 660
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CCTTGTCCTCTCGCAATTTTGATAGCTATTCACACCAGTATCCTGTTTTGGTTGTTAATT 720
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TTTATGCCCCCTGGTGTTACTGGAGCAATCGATTGAAACCTTCGTGGGAGAAGACTGCAA 780
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      AAATAATGAGGGAGAGATATGATCCTGAAATGGATGGCAGAATCATTCTTGCCAAGGTTG 840
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      ACTGCACTGAAGAAATTGACTTGTGTAGGAGGCACCATATACAAGGTTATCCATCCATTC 900
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GCATTTTCCGTAAAGGGAGTGATCTTAAGGAAAACCAGGGTCACCATGATCATGAATCAT 960
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      ACTACGGCGATCGTGATACTGAGAGTTTAGTAGCGGCAATGGAAACTTATGTTGCAAACA 1020
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TCCCAAAAGATGCCCATGTTCTAGCTTTGGAGGACAAATCCAATAAGACTGTTGATCCTG 1080
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CAAAACGCCCTGCTCCATTGACCAGTGGATGCAGAATAGAAGGTTTTGTGCGGGTAAAAA 1140
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      AGGTCCCTGGGAGTGTTGTAATCTCAGCTCGATCTGGTTCCCACTCCTTTGATCCATCCC 1200
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      AGATAAATGTTTCCCACTATGTAACACAGTTCTCTTTTGGCAAAAGGCTATCGGCAAAGA 1260
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      ---------------------TTCCNNCTCACCTTAGGGCCAATTGGGTCCCGGCCCCCC 39
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TGTTTAATGAACTGAAAAGACTAACTCCCTATGTTGGTGGCCACCATGATAGATTAGCTG 1320
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      CTCGAGTCGACCCACGCNTCCNATGGTGATNCCAATCCCAACGTTACTATTGAGCATTNC 99
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GTCAATCCTACAT-TGTTAAGCATGGTGATGTCAATGCCAACGTTACTATTGAGCATTAC 1379
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      CNGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTT 159
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CTGCAAATTGTGAAAACTGAGCTTGTTACACTGAGATCATCAAAGGAATTGAAACTGGTT 1439
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      GAGGAGTATGAATCCACAGCNCACANCAGCTTGGTGCACAGCTTCTATGTNCCTGTTGTG 219
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GAGGAGTATGAATACACAGCGCACAGCAGCTTGGTGCACAGCTTCTATGTTCCTGTTGTG 1499
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      AAATNCCATTTTGAACCTTCTCCCATGCAGGTCTTGGTAACTGAACTTCCAAAANCCTTC 279
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      AAATTCCATTTTGAACCTTCTCCCATGCAGGTCTTGGTAACTGAACTTCCAAAATCCTTC 1559
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      TCCCATTTCATCACAAATGTTTGTNCTATCATTGGAGGNGTTTTCNCGGTTNCTGGAATA 339
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      TCCCATTTCATCACAAATGTTTGTGCTATCATTGGAGGAGTTTTCACGGTTGCTGGAATA 1619
consensus_11599#2      ------------------------------------------------------------
                                                                                   

consensus_11599#1      CTGGATTCCATCTTCCACAACNCCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAAC 399
consensus_11599#3      ----------------------------CGCTG-TTAAGAAGTTCGAGCTTGGGAAGAAC 31
consensus_11599#0      CTGGATTCCATCTTCCACAACACCTTGCGGCTGGTTAAGAAGGTCGAGCTTGGGAAGAAC 1679
consensus_11599#2      ------------------------------------AAAAAAAAAAA----AAAAAAAAA 20
                                                           ** **     *       ** ** 

consensus_11599#1      ATTTGAACAACAAGATTATTCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTT 459
consensus_11599#3      ATTGGAACCA---AATTAATCTTCAGAACCA-CCTCAAGCTTAGTG--TCCACTA-TTTT 84
consensus_11599#0      ATTTGAACAACAAGATTAATCTTCAGAAGCAGCCTCAAGCTTAGTGGTTGCACTAGTTTT 1739
consensus_11599#2      AAAAAAAAAAAAAAAAAAAGCTT-----GCGGCCGCAAGCTTAGTGGTTGCACTAGTTTT 75
                       *    **  *    *  *  ***      *  ** ***********  * ***** ****

consensus_11599#1      AGTCATTATTTTGTTATACCNGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGT 519
consensus_11599#3      AGTCAT-ATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGTT 143
consensus_11599#0      AGTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGT 1799
consensus_11599#2      AGTCATTATTTTGTTATACCAGGGTAGGAATTCTTAATATATCAAGATGTGAAAGAGGGT 135
                       ****** ************* ************************************* *

consensus_11599#1      AGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGAC 579
consensus_11599#3      AGTGG-TTGCCAGAGGAGGAGAATTTGGGTTCATGATATATAGTAATAGTAG-TAGG--C 199
consensus_11599#0      AGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGAC 1859
consensus_11599#2      AGTGGGTTGGCAGAGGAGGAGAAGTTGGGGTCATGATATATAGTAATAGTAGGTAGGGAC 195
                       ***** *** ************* ***** ********************** ****  *

consensus_11599#1      CTCACTGTTTTGCTAAACGACTTCGTAAGAACAATAAGACAGTGGATCCTTGTTAACTAT 639
consensus_11599#3      CCTCCTGTTT-GCTAACCGACTTCGTAAGACCAT--AACCAGTGGACC--TGGTAACTAA 254
consensus_11599#0      CTCACTGTTTTGCTAAACGACTTCGTAAGAACAATAATACAGTGGATCCTTGTTAACTAT 1919
consensus_11599#2      CTCACTGTTTTGCTAAACGACTTCGTAAAAACAATAAGACAGTGGATCCTTGTTAACTAT 255
                       *   ****** ***** *********** * **   *  ******* *  ** ****** 

consensus_11599#1      ACCCTACGTTAATTCGTCCAGACT-TGTGTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAA 698
consensus_11599#3      AAAAAAA----------------------------------------------------- 261
consensus_11599#0      ACCCTACGTTAATTCGTCCAGACTATGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCA 1979
consensus_11599#2      ACCCTACGTTAATTCGTCCAGACT-TGTGTTGTGTTACTCTGTTTACTGTTGTGATGGCA 314
                       *    *                                                      

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      CATGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTTATTTACGGTAACCA 2039
consensus_11599#2      CCTGTCATTACTCGTTACTCTGGATTTGTCTTCCGTCTCAAAATTCATCTACGGTAACCA 374
                                                                                   

consensus_11599#1      ------------------------------------------------------------
consensus_11599#3      ------------------------------------------------------------
consensus_11599#0      GAATTTTTAAGTTCAAAAAAAAAAAAAA-------------------------------- 2067
consensus_11599#2      GAATTTTTAAGTTCGCTTAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGGCCGCCACCGCG 434
                                                                                   

consensus_11599#1      ---
consensus_11599#3      ---
consensus_11599#0      ---
consensus_11599#2      GGG 437
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)