cluster # 1160

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Oryza sativa
cluster # 1160 cluster # 1160 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1160#0 length = 603 sequences # 1

consensus_1160#1 length = 302 sequences # 1

consensusID : consensus_1160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA]

[+] EMBL BM418709             [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA]




>consensus_1160#0
TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGT
GCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCC
GTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGG
CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG
AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT
TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG
TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGA
GTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCA
GCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAAT
TGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAA
AAA

consensusID : consensus_1160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN]

[+] EMBL CF197403             [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN]




>consensus_1160#1
TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAA
CCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAG
TATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGA
TGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGAT
GCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATN
NN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1160#0      TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGT 60
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      GCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCC 120
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      GTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGG 180
consensus_1160#1      ------------------------------------------TGATCGATTTCATCAGGG 18
                                                                ******************

consensus_1160#0      CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 240
consensus_1160#1      CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 78
                      ************************************************************

consensus_1160#0      AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 300
consensus_1160#1      AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 138
                      ************************************************************

consensus_1160#0      TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 360
consensus_1160#1      TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 198
                      ************************************************************

consensus_1160#0      TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGA 420
consensus_1160#1      TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGA 258
                      ***************************************************   ******

consensus_1160#0      GTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCA 480
consensus_1160#1      GTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN---------------- 302
                      ****   **************************     ***                   

consensus_1160#0      GCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAAT 540
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      TGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAA 600
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      AAA 603
consensus_1160#1      ---