These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1374 fasta sequence [CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG-CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT-GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA] [+] EMBL AK067767 [CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTTCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ] [+] EMBL CB641684 [ CCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAG ] [+] EMBL AU066223 [ GGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTNCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATG AACCCCGCGGCTTCT ] [+] EMBL AU066311 [ GGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTT ] [+] EMBL C26851 [ ngntntnCTAGATCGANTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTN CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTNTCGCCATACTTGGTTTTCGAGAAG TCCAGTTTCCGNTCTAAGGTGAAAAATGAAACCC ] [-] EMBL OSC23841 [ ATGANCAGCCAATGTTTGATGAGATGGACAAAGTCAAACTGTCCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTCCCCTTTGGTTTTTGCCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ] [-] EMBL OSC27471 [ AACTGTNCGGNAAAAAGATATACGGCATAACCGNCAAATGCGGGTNCNCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGCCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGNCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ] [+] EMBL AU181532 [ GTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA] consensusID : consensus_11610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [GTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCGCGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA] [+] EMBL AU174413 [GTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCGCGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11610#0 CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCG 60 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 CCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCC 120 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 CAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCT 180 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 ACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCG 240 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 CAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCC 300 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 CTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTG 360 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 ATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAAT 420 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 ACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAA 480 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 CCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATG 540 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 GTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGG 600 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 TTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCA 660 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 GAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTC 720 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 TCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGT 780 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 ACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTT 840 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 GGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATC 900 consensus_11610#1 ------------------------------------------------------------ consensus_11610#0 AGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAA 960 consensus_11610#1 --------------------------GTCAAACTGTTCGGGAAAAAGATATACGGCATAA 34 ********************************** consensus_11610#0 CCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTG 1020 consensus_11610#1 CCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTG 94 ************************************************************ consensus_11610#0 TGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTG 1080 consensus_11610#1 TGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTG 154 ************************************************************ consensus_11610#0 TCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCG 1140 consensus_11610#1 TCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCG 214 ************************************* ********************** consensus_11610#0 CGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAA 1200 consensus_11610#1 CGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAA 274 ****** ***************************************************** consensus_11610#0 GTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTT 1260 consensus_11610#1 GTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTT 334 ************************************************************ consensus_11610#0 TTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGA 1320 consensus_11610#1 TTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGA 394 ************************************************************ consensus_11610#0 AACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA 1374 consensus_11610#1 AACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA----------------- 431 ************************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||