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Oryza sativa
cluster # 11615 cluster # 11615       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11615#0 length = 1297 sequences # 5  
consensus_11615#1 length = 685 sequences # 1  
consensus_11615#2 length = 655 sequences # 1  
consensus_11615#3 length = 637 sequences # 1  
consensus_11615#4 length = 144 sequences # 1  

consensusID : consensus_11615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1297
fasta sequence
                              [TCTTCTTCTCCCCCACCACGAGGGAGGAGAAGATCCTGTCGGGATCGGAATCCCCCCCTCCTCCTCCGCTCCTCGCCCTCTCCGTCGAGGAGGAGGCGGTGGTGGTGGTGGTGGCGCGGCCGCTCCAACAATCGCGAGGTGAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCA-GCAGAGACCCCCA-TGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCACTCCGAAATGGGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATCGTAGCTAAACATGCATGTTCACATAAAAAAAAAAAAAAAAAAACACTGT]

[+] EMBL AK099471             [TCTTCTTCTCCCCCACCACGAGGGAGGAGAAGATCCTGTCGGGATCGGAATCCCCCCCTCCTCCTCCGCTCCTCGCCCTCTCCGTCGAGGAGGAGGCGGTGGTGGTGGTGGTGGCGCGGCCGCTCCAACAATCGCGAGGTGAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCA GCAGAGACCCCCA TGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCACTCCGAAATGGGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATCGTAGCTAAAC                                       ]
[+] EMBL CB656461             [                                    TGTCGCTTTTAGAATCCCCCCCTCCTCCTCCGCTCCTCGCCCTCTCCGTCGAGGAGGAGGCGGTGGTGGTGGTGGTGGCGCGGCCGCTCCAACAATCGC     GAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCA GCAGAGACCCCCA TGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTgtaagtga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF295582             [                                                                                                                          CTCCAACAATCGCGAGGTGAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCA GCAGAGACCCCCA TGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB965304             [                                                                                                                                                AGTACCATTTGTTCTTCTTAGTTAATAGTG TCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCATGCAGAGACCCCCATTGTCTGAGGCCTATCCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF295583             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCCATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATTTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAAACTGGTAGTGCATTCATAAAAAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAATAGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATCGTAGCTAAACATGCATGTTCACATAAAAAAAAAAAAAAAAAAACACTGT]


>consensus_11615#0 TCTTCTTCTCCCCCACCACGAGGGAGGAGAAGATCCTGTCGGGATCGGAATCCCCCCCTC CTCCTCCGCTCCTCGCCCTCTCCGTCGAGGAGGAGGCGGTGGTGGTGGTGGTGGCGCGGC CGCTCCAACAATCGCGAGGTGAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACA TAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGACCTTTGGGAGGTCTAGATGG ACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAAC TAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATT GCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCCACTGTAGTCT CTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCAT TGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACT AATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATA TATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCACT CCGAAATGGGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCC ATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATC CATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGG CGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCA TCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTC CTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTA TAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACC GGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGT ACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAA TAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATCGTAGCTAAACAT GCATGTTCACATAAAAAAAAAAAAAAAAAAACACTGT



consensusID : consensus_11615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [GGCCGAATCAGAAAATATTTGCGATGGGCAGCGTATACAATGATGGCCCCTACAACACTTTGTGTAAGCAGAGCCCTCCGAAATGACCATCCAAAATTACTGATGGCAGCATCCCCATTGCTCCTACCTTTCCAGCCATTGGTGGTATCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATACCCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATTGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCTTGCGGCATGGTATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATTTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATTCATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATGGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATGGTAGCTAAAAAAAAAAAAAA]

[-] EMBL CA762051             [GGCCGAATCAGAAAATATTTGCGATGGGCAGCGTATACAATGATGGCCCCTACAACACTTTGTGTAAGCAGAGCCCTCCGAAATGACCATCCAAAATTACTGATGGCAGCATCCCCATTGCTCCTACCTTTCCAGCCATTGGTGGTATCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATACCCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATTGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCTTGCGGCATGGTATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATTTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATTCATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATGGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATGGTAGCTAAAAAAAAAAAAAA]


>consensus_11615#1 GGCCGAATCAGAAAATATTTGCGATGGGCAGCGTATACAATGATGGCCCCTACAACACTT TGTGTAAGCAGAGCCCTCCGAAATGACCATCCAAAATTACTGATGGCAGCATCCCCATTG CTCCTACCTTTCCAGCCATTGGTGGTATCAGCCGTCCACACTGGGATAATGGAGGTTTCA TTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATACCCTACACAAGATG TCCTCCCTACTGGGAGGCGCGCTGTTCATTGCCGACGACGCCTTCCCGGAGACCCCCTAT CTCCTTGCGGCATGGTATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTT GAATGATCACGTCCTTCCTGCCTATTTAGGCTATAGCTAGTTTTCAACAACCAGTTGATA TGAATATGATAGCATTATAGCAATTCATCAACCTGCCGACACTGATCGCGTCACATTGTG TAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCAT AGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATGGTAGTCGTATGTTG TATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATAT ATATGGTAGCTAAAAAAAAAAAAAA



consensusID : consensus_11615#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence
                              [AGATTTTGACTTGCCATGTTTCATGTAGTGTTTAAGCAGAGCACTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAAATTGGGTCTCAAAGAAATATATATATCGTAGCTAAACAAAAAAAAAGGA]

[-] EMBL CB656462             [AGATTTTGACTTGCCATGTTTCATGTAGTGTTTAAGCAGAGCACTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTATGTAAAATTGGGTCTCAAAGAAATATATATATCGTAGCTAAACAAAAAAAAAGGA]


>consensus_11615#2 AGATTTTGACTTGCCATGTTTCATGTAGTGTTTAAGCAGAGCACTCCGAAATGAGCATCC AAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGC CGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCT CAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGC CGACGACGCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGCATT GGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTATCTAGGCT ATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATACATCAAC CTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCA CAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTGTATATGGTACCATCTTGTGCCTG TATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACCCTAGTA TGTAAAATTGGGTCTCAAAGAAATATATATATCGTAGCTAAACAAAAAAAAAGGA



consensusID : consensus_11615#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence
                              [AGGGAATAGCTGCGGCGCCCAACAATCGCGAGGAGTACCATTGTCTTCTTAGTAATAGTGTTCACATAAATAAAGTGAATAATGGGAGTCCGGAAGATCAAGACCTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCACTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCCCTCGTGCCGAATAC]

[+] EMBL CB964925             [AGGGAATAGCTGCGGCGCCCAACAATCGCGAGGAGTACCATTGTCTTCTTAGTAATAGTGTTCACATAAATAAAGTGAATAATGGGAGTCCGGAAGATCAAGACCTTGGGAGGTCTAGATGGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGATTGCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCCACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCACTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAGCCATTGGTGGTTTCAGCCGTCCCCTCGTGCCGAATAC]


>consensus_11615#3 AGGGAATAGCTGCGGCGCCCAACAATCGCGAGGAGTACCATTGTCTTCTTAGTAATAGTG TTCACATAAATAAAGTGAATAATGGGAGTCCGGAAGATCAAGACCTTGGGAGGTCTAGAT GGACTCTACGGGGTACAACTTGCAGGCCGGTCAATGTACAGTGATGATGAAGCCGTCAAA ACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAAGCCGAAGA TTGCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCCACTGTAGT CTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTATTCCTTTC ATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACGCGAACTCA CTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAATCAGAAAA TATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAAGCAGAGCA CTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAG CCATTGGTGGTTTCAGCCGTCCCCTCGTGCCGAATAC



consensusID : consensus_11615#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 144
fasta sequence
                              [AGTACCATTTGTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGCACCTTTGGGCAGGTCTCAGCATGGACTCTCACGGGGTCACAACTTGCCAGGCGCGGTCCAATGTCCCAG]

[+] EMBL CB965962             [AGTACCATTTGTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGCACCTTTGGGCAGGTCTCAGCATGGACTCTCACGGGGTCACAACTTGCCAGGCGCGGTCCAATGTCCCAG]


>consensus_11615#4 AGTACCATTTGTCTTCTTAGTTAATAGTGTTCACATAAATAAAGTGAATAAATGGGAGTC CGTGAAGATTCAAGCACCTTTGGGCAGGTCTCAGCATGGACTCTCACGGGGTCACAACTT GCCAGGCGCGGTCCAATGTCCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      TCTTCTTCTCCCCCACCACGAGGGAGGAGAAGATCCTGTCGGGATCGGAATCCCCCCCTC 60
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      --------------------------------------------------AGGGAATAGC 10
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CTCCTCCGCTCCTCGCCCTCTCCGTCGAGGAGGAGGCGGTGGTGGTGGTGGTGGCGCGGC 120
consensus_11615#1      ----------------------GGCCGAATCAGAAAATATTTGCGATGGGCAGCGTATAC 38
consensus_11615#2      --------------------------------------------------------AGAT 4
                                                                                   

consensus_11615#3      TGCGGCGCCCAACA-ATCGCGAGGAGTACCATT-GT-CTTCTTAGT-AATAGTGTTCACA 66
consensus_11615#4      ------------------------AGTACCATTTGT-CTTCTTAGTTAATAGTGTTCACA 35
consensus_11615#0      CGCTCCAACAATCGCGAGGTGAGGAGTACCATTTGTTCTTCTTAGTTAATAGTGTTCACA 180
consensus_11615#1      AATGATGGCCCCTACAACACTTTGTGT--AAGCAGA-GCCCTCCGAAATGACCATCCAAA 95
consensus_11615#2      TTTGACTTGCCATGTTTCATGTAGTGTTTAAGCAGA-GCACTCCGAAATGAGCATCCAAA 63
                                                **   *   *     **  *  *  *   * ** *

consensus_11615#3      -TAAATAAAGTGAATAA-TGGGAGTCCG-GAAGAT-CAAG-ACCTTGGG--AGGTCT--A 117
consensus_11615#4      -TAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAGCACCTTTGGGCAGGTCTCAG 94
consensus_11615#0      -TAAATAAAGTGAATAAATGGGAGTCCGTGAAGATTCAAG-ACCTTTGGG-AGGTCT--A 235
consensus_11615#1      ATTACTGATGGCAGCATCCCCATTGCTCCTACCTTTCCAG--CCATTGGT-GGTATCAGC 152
consensus_11615#2      ATTACTGATGGCAGCATCCACATTGCTCCTACCTTTCCAG--CCATTGGT-GGTTTCAGC 120
                        * * * * *  *  *         *    *   * * **  ** * **   *       

consensus_11615#3      GATGGACTCT-ACGGGGT-ACAACTTGC-AGGC-CGGTC-AATGTACAGTGATGATGAAG 172
consensus_11615#4      CATGGACTCTCACGGGGTCACAACTTGCCAGGCGCGGTCCAATGTCCCAG---------- 144
consensus_11615#0      GATGGACTCT-ACGGGGT-ACAACTTGC-AGGC-CGGTC-AATGTACAGTGATGATGAAG 290
consensus_11615#1      CGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCG-AGCATCCATGGAACCAGAGC 211
consensus_11615#2      CGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCG-AGCATCCATGGAACCAGAGC 179
                         *  ** **       *      **     **   *   *   * *             

consensus_11615#3      CCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAA 232
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CCGTCAAAACTAGCATTATAGATCCTTTGGCTCGTGAACCGCAGGAGGGTGTTGGCACAA 350
consensus_11615#1      TCAGGATGGCCCATACCCTACACAAGATGTCCTCCCTACTG-GGAGGCGCGCTGTTCATT 270
consensus_11615#2      TCAGGATGGCCCATAACCTACACAAGATGTCCTCCCTACTG-GGAGGCGCGCTGTTCATC 238
                                                                                   

consensus_11615#3      GCCGAAGATTGCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCC 292
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      GCCGAAGATTGCTAATCCGGCGGCTCTGGCAGCAGAGACCCCCATGTCTGAGGCCTATCC 410
consensus_11615#1      GCCGACGAC-GCCTTCCCGGAGACCCCCTATCTCCTTGCGGCATGGTATCTAGCTGCAGC 329
consensus_11615#2      GCCGACGAC-GCCTTCCCGGAGACCCCCTATCTCCATGCGGCATGGCATCTAGCTGCAGC 297
                                                                                   

consensus_11615#3      ACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTA 352
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      ACTGTAGTCTCTCATGCGATAAACATCCGGGCGAAACTATTGCTAATGTTGTCACCTCTA 470
consensus_11615#1      ATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCC-TATTTA 388
consensus_11615#2      ATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCC-TATCTA 356
                                                                                   

consensus_11615#3      TTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACG 412
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      TTCCTTTCATTGTTCTTGGGCTGCAGACACCAAGAAAGAACTTGAACACTGCACTTTACG 530
consensus_11615#1      GGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATA-GCAATTCA 447
consensus_11615#2      GGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATA-GCAATACA 415
                                                                                   

consensus_11615#3      CGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAA 472
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CGAACTCACTAATTGGAGTTGGAATAGCTTCTAGTTTGTATCATACGTCAAGAGGACGAA 590
consensus_11615#1      TCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATAT 507
consensus_11615#2      TCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATAT 475
                                                                                   

consensus_11615#3      TCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAA 532
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      TCAGAAAATATATGCGATGGGCAGACTATACAATGATTGCCACTACAACACTTTGTTTAA 650
consensus_11615#1      TGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTG-TATATGGTACCATCTTG 566
consensus_11615#2      TGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGGTG-TATATGGTACCATCTTG 534
                                                                                   

consensus_11615#3      GCAGAGCACTCCGAAATGAGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTAC 592
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      GCAGAGCACTCCGAAATGGGCATCCAAAATTACTGATGGCAGCATCCACATTGCTCCTAC 710
consensus_11615#1      TGCCTGTATTACTGTATATGGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACC 626
consensus_11615#2      TGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTACC 594
                                                                                   

consensus_11615#3      CTTTCCAGCCATTGGTGGTTTCAGCCGTCCCCTCGTGCCGAATAC--------------- 637
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CTTTCCAGCCATTGGTGGTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGA 770
consensus_11615#1      CTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATGGTAGCTAAAAAAAAAAAAAA- 685
consensus_11615#2      CTAGTATGTAAAATTGGGTCTCAAAGAAATATATATATCGTAGCTAAACAAAAAAAAAGG 654
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      AGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCATAACCTACACAAGATGTCCTCCC 830
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      A----------------------------------------------------------- 655
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      TACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCCATG 890
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGAT 950
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      CACGTCCTTCCTGCCTATCTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATAT 1010
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      GATAGCATTATAGCAATACATCAACCTGCCGACACTGATCGCGTCACATTGTGTAGGTTC 1070
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      ACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCCAGG 1130
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      TGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTT 1190
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      ------------------------------------------------------------
consensus_11615#4      ------------------------------------------------------------
consensus_11615#0      GTTCCGTGAATAATGTACCCTAGTATGTAAACTTTGGTCTCAAAGAAATATATATATCGT 1250
consensus_11615#1      ------------------------------------------------------------
consensus_11615#2      ------------------------------------------------------------
                                                                                   

consensus_11615#3      -----------------------------------------------
consensus_11615#4      -----------------------------------------------
consensus_11615#0      AGCTAAACATGCATGTTCACATAAAAAAAAAAAAAAAAAAACACTGT 1297
consensus_11615#1      -----------------------------------------------
consensus_11615#2      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)