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Oryza sativa
cluster # 11628 cluster # 11628       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11628#0 length = 1884 sequences # 7  
consensus_11628#1 length = 800 sequences # 2  

consensusID : consensus_11628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1884
fasta sequence
                              [GAAGTGGCCCAAGGCTCCGACGGCGCGCGAGTTGCTGTGGTGGTTGTGGGAGCCCCCGTCGGCGACGACTCCGCCGCTCCTCCGCCCGCGGCTGCAGCTGGAGCAGCCCCGGCGGTGACCCCCGGCGAGGAGGCGGCTAAGCGGGAGTCCTTGTTGGCGGCGGCGGCGGCGGCGGCGGCTGCTGAGTGCAAGCAGGAGGCAGCGGCGGCGGCGACGGGGTTGCAGGCCATGGCGGTCACCGTGGCGCGGGACGTCGAGGCGGGCGGCCTGGACGCCAGCACCAGCGGGGCCGCGGACGAGAAGCCCTCGTGGTTCACCCCTAAGAGATTACTTGTGATGTTCTGCCTCATCAACATGCTAAACTATGTTGACCGGGGTGCAATAGCAAGTAATGGTGTGAATGGTAGCCGCCAAAGTTGTACTGGTGGCACATGCACATCAGGTTCTGGAATTCAGGGTGATTTCAATCTGAACAATTTTGAAGATGGTGTGCTATCATCAGCATTTATGGTTGGGTTGTTGATTGCTTCGCCCATATTTGCATCATTGGCAAAAATACACAATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGGACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGCATGTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACTGGAATAGCGGTTGGCTATGTTTATGGTGGTTTGGTTGGAAATAGTCTGCACTGGCGTGCTGCTTTCTGGGGAGAGTCGATTTTGATGCTTCCTTTTGTTATTCTGGGCTTTGTAATAAAGCCATTAGAGCTCAAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCA-ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGTGATTTTTCTTTTCTTTTTGTGTACAGACCACAGATACAAGCAACAGAGTATCAG-AACTACTTGGTTTCTGGTGACAAAAAAAAGGA]

[+] EMBL AK065806             [GAAGTGGCCCAAGGCTCCGACGGCGCGCGAGTTGCTGTGGTGGTTGTGGGAGCCCCCGTCGGCGACGACTCCGCCGCTCCTCCGCCCGCGGCTGCAGCTGGAGCAGCCCCGGCGGTGACCCCCGGCGAGGAGGCGGCTAAGCGGGAGTCCTTGTTGGCGGCGGCGGCGGCGGCGGCGGCTGCTGAGTGCAAGCAGGAGGCAGCGGCGGCGGCGACGGGGTTGCAGGCCATGGCGGTCACCGTGGCGCGGGACGTCGAGGCGGGCGGCCTGGACGCCAGCACCAGCGGGGCCGCGGACGAGAAGCCCTCGTGGTTCACCCCTAAGAGATTACTTGTGATGTTCTGCCTCATCAACATGCTAAACTATGTTGACCGGGGTGCAATAGCAAGTAATGGTGTGAATGGTAGCCGCCAAAGTTGTACTGGTGGCACATGCACATCAGGTTCTGGAATTCAGGGTGATTTCAATCTGAACAATTTTGAAGATGGTGTGCTATCATCAGCATTTATGGTTGGGTTGTTGATTGCTTCGCCCATATTTGCATCATTGGCAAAAATACACAATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGGACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGCATGTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACTGGAATAGCGGTTGGCTATGTTTATGGTGGTTTGGTTGGAAATAGTCTGCACTGGCGTGCTGCTTTCTGGGGAGAGTCGATTTTGATGCTTCCTTTTGTTATTCTGGGCTTTGTAATAAAGCCATTAGAGCTCAAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACTCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCA ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGTGATTTTTCTTTTCTTTTTGTGTACAGACCACAGATACAAGCAACAGAGTATCAG AACTACTTG                       ]
[+] EMBL CB648609             [                                  CTGTGGTGGTTGTGGGAGCCCCCGTCGGCGACGACTCCGCCGCTCCTCCGCCCGCGGCTGCAGCTGGAGCAGCCCCGGCGGTGACCCCCGGCGAGGAGGCGGCTAAGCGGGAGTCCTTGTTGGCGGCGGCGGCGGCGGCGGCGGCTGCTGAGTGCAAGCAGGAGGCAGCGGCGGCGGCGACGGGGTTGCAGGCCATGGCGGTCACCGTGGCGCGGGACGTCGAGGCGGGCGGCCTGGACGCCAGCACCAGCGGGGCCGCGGACGAGAAGCCCTCGTGGTTCACCCCTAAGAGATTACTTGTGATGTTCTGCCTCATCAACATGCTAAACTATGTTGACCGGGGTGCAATAGCAAGTAATGGTGTGAATGGTAGCCGCCAAAGTTGTACTGGTGGCACATGCACATCAGGTTCTGGAATTCAGGGTGATTTCAATCTGAACAATTTTGAAGATGGTGTGCTATCATCAGCATTTATGGTTGGGTTGTTGATTGCTTCGCCCATATTTGCATCATTGGCAAAAATACACAATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGGACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGCAT     TTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACTGGAATAGCGGTTGGCTATGTTTATGGTGGTTTGGTTGGAAATAGTCTGCACTGGCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB648610             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATAATGTGTGGTGGAATAACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCA ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGTGATTTTTCTTTTCTTTTTGTGTACAGACCACAGATCCAAGCAACAGAGTATCAG AACTCCTTGGTTTCTGGTGACAAAAAAAAGGA]
[-] EMBL CB668929             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCATTCTTGACAAGATAGACTCACCAATATCTAATGCTTTCAAGCTTCTCTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTCTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCATCTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTTCCTTGACATTTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCACACGCCCAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTCCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCTTTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAGGGATAGAAGAAA                                                                                                          ]
[+] EMBL CA766876             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTTGACAAGATAGACTCAACAATATCTAATGCCTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCA ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTGTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCCTTGGGATTTTTCTTTTCTTTTTGGGNACAGACCACAGATACAAGCAACAGAGTATCAG AACTACTTGGNTTCTGG               ]
[+] EMBL CB096894             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTACGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATCGGCATATTTGTCCGTAGCGTTGATCGTTTCA ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTGTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGGGATTTTTCTTTTCTTTTTGGGGACAGACCACAGATACCAGCAACAGAGTATCAGAAACTACTTGGTTTCTGGTGACAA         ]
[+] EMBL CF314940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCA ACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGTGATTTTTCTTTTCTTTTTGTGTACAGACCACAGATACAAGCAACAGAGTATCA                                  ]


>consensus_11628#0 GAAGTGGCCCAAGGCTCCGACGGCGCGCGAGTTGCTGTGGTGGTTGTGGGAGCCCCCGTC GGCGACGACTCCGCCGCTCCTCCGCCCGCGGCTGCAGCTGGAGCAGCCCCGGCGGTGACC CCCGGCGAGGAGGCGGCTAAGCGGGAGTCCTTGTTGGCGGCGGCGGCGGCGGCGGCGGCT GCTGAGTGCAAGCAGGAGGCAGCGGCGGCGGCGACGGGGTTGCAGGCCATGGCGGTCACC GTGGCGCGGGACGTCGAGGCGGGCGGCCTGGACGCCAGCACCAGCGGGGCCGCGGACGAG AAGCCCTCGTGGTTCACCCCTAAGAGATTACTTGTGATGTTCTGCCTCATCAACATGCTA AACTATGTTGACCGGGGTGCAATAGCAAGTAATGGTGTGAATGGTAGCCGCCAAAGTTGT ACTGGTGGCACATGCACATCAGGTTCTGGAATTCAGGGTGATTTCAATCTGAACAATTTT GAAGATGGTGTGCTATCATCAGCATTTATGGTTGGGTTGTTGATTGCTTCGCCCATATTT GCATCATTGGCAAAAATACACAATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGG ACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGC ATGTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGAT AATGCTCCAGCAGCACAGAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACT GGAATAGCGGTTGGCTATGTTTATGGTGGTTTGGTTGGAAATAGTCTGCACTGGCGTGCT GCTTTCTGGGGAGAGTCGATTTTGATGCTTCCTTTTGTTATTCTGGGCTTTGTAATAAAG CCATTAGAGCTCAAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTC AATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCA GAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATC AAACACTTTATGAAAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATATTTGGG ACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAG CTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAG AGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAG GCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATG GCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGG CTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTC TTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCAAC GAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATTGCTCGAT GAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTTTTTCT CTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAAT TTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGCTTTGTGA TTTTTCTTTTCTTTTTGTGTACAGACCACAGATACAAGCAACAGAGTATCAGAACTACTT GGTTTCTGGTGACAAAAAAAAGGA



consensusID : consensus_11628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence
                              [TCTAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATGAAAGAACTGCTCCAAGAGAAAGTCTATGTGATCAATGTCTTAGGTTACATCTCTTACAACTTTGTCATTGGTGCCTATTCCTACTGGGGCCCTAAGGCTGGTCAGGATATCTACAATATGGCGAGTGCAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCAACGAACAGAGTGAGCAT]

[+] EMBL CB668928             [TCTAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATGAAAGAACTGCTCCAAGAGAAAGTCTATGTGATCAATGTCTTAGGTTACATCTCTTACAACTTTGTCATTGGTGCCTATTCCTACTGGGGCCCTAAGGCTGGTCAGGATATCTACAATATGGCGAGTGCAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTTTCAACGAACAGAGTGAGCAT]
[+] EMBL CA762145             [                                                                                                  GATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATGAAAGAACTGCTCCAAGAGAAAGTCTATGTGATCAATGTCTTAGGTTACATCTCTTACAACTTTGTCATTGGTGCCTATTCCTACTGGGGCCCTAAGGCTGGTCAGGATATCTACAATATGGCGAGTGCAGATATAATGTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_11628#1 TCTAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGC GGCAAGATGAGACAAAGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTAC CACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTA TGAAAGATATGAAAGAACTGCTCCAAGAGAAAGTCTATGTGATCAATGTCTTAGGTTACA TCTCTTACAACTTTGTCATTGGTGCCTATTCCTACTGGGGCCCTAAGGCTGGTCAGGATA TCTACAATATGGCGAGTGCAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAATAT TTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGCTT TCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTT TCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAA CTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTAT CAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTG TTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTA TCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCGTT TCAACGAACAGAGTGAGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11628#0      GAAGTGGCCCAAGGCTCCGACGGCGCGCGAGTTGCTGTGGTGGTTGTGGGAGCCCCCGTC 60
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      GGCGACGACTCCGCCGCTCCTCCGCCCGCGGCTGCAGCTGGAGCAGCCCCGGCGGTGACC 120
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      CCCGGCGAGGAGGCGGCTAAGCGGGAGTCCTTGTTGGCGGCGGCGGCGGCGGCGGCGGCT 180
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      GCTGAGTGCAAGCAGGAGGCAGCGGCGGCGGCGACGGGGTTGCAGGCCATGGCGGTCACC 240
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      GTGGCGCGGGACGTCGAGGCGGGCGGCCTGGACGCCAGCACCAGCGGGGCCGCGGACGAG 300
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      AAGCCCTCGTGGTTCACCCCTAAGAGATTACTTGTGATGTTCTGCCTCATCAACATGCTA 360
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      AACTATGTTGACCGGGGTGCAATAGCAAGTAATGGTGTGAATGGTAGCCGCCAAAGTTGT 420
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      ACTGGTGGCACATGCACATCAGGTTCTGGAATTCAGGGTGATTTCAATCTGAACAATTTT 480
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      GAAGATGGTGTGCTATCATCAGCATTTATGGTTGGGTTGTTGATTGCTTCGCCCATATTT 540
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      GCATCATTGGCAAAAATACACAATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGG 600
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      ACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGC 660
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      ATGTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGAT 720
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      AATGCTCCAGCAGCACAGAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACT 780
consensus_11628#1      ---------------------------TCTAAGGATTTAATCACAGTGTGAAGACAAAAG 33
                                                  *     * * *  **    **** * **  *  

consensus_11628#0      GGAATAGCGGTTGGCTATGTTTATGGTGGTTTGGTTGGA---AATAGTCTGCACTGGC-- 835
consensus_11628#1      AGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAAAGCAGGGTGCGTCTATTG 93
                        * ** * *    ***   *  *  * **   * *  **   *  **  ***        

consensus_11628#0      GTGCTGCTTTCTGGGGAGAGTCGATTTTGATGCTTCCTTTTGTTATTCTGGGCTTTGTAA 895
consensus_11628#1      GAGTTGATGGTCTTGCAGAAACG---CTACCACACAAGTTCTCCATCTCAAGTTTTGGGA 150
                       * * ** *      * ***  **    *    *     **    **     * ****  *

consensus_11628#0      TAAAGCCATTAGAGCTCAAAGGATTTAATCACAGTGTGAAGACAAAAGAGTATGGTGAGA 955
consensus_11628#1      AGAA------AGTTCTAACCGAAATCAAACACTTTATGAAAGATATGAAA------GAAC 198
                         **      **  ** *  * * * ** ***  * ****    *   *       **  

consensus_11628#0      TGCTCAATCCAGAGCGGCAAGATGA--GACAAAGCAGGGTGCGTCTATTGGAGTTGATGG 1013
consensus_11628#1      TGCTCCAAG-AGAAAGTCTATGTGATCAATGTCTTAGGTTACATCTCTTACAACT--TTG 255
                       ***** *   ***  * * *  ***   *      *** * * *** **  *  *  * *

consensus_11628#0      TCTTGCAGAAACGCTACCACACAAGTTCTCCATCTCAAGTTTTGGGAAGAAAGTTCTAAC 1073
consensus_11628#1      TCATTGGTGCCTATTCCTACTGGGGCCCT-------AAGGCTGGTCAGGATATCTACAAT 308
                       ** *          * * **    *  **       ***  * *  * ** *  *  ** 

consensus_11628#0      CGAAATCAAACACTTTATGAAAGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAAT 1133
consensus_11628#1      --ATGGCGAGTGC--------AGATATAATGTTTGGTGGAATAACAATTGTCTGTGGAAT 358
                         *   * *   *        ***************************************

consensus_11628#0      ATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGC 1193
consensus_11628#1      ATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAACAATATCTAATGC 418
                       ************************************************************

consensus_11628#0      TTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTG 1253
consensus_11628#1      TTTCAAGCTTCTTTCTGGTGCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTG 478
                       ************************************************************

consensus_11628#0      TTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGC 1313
consensus_11628#1      TTTCAAGAGCCTTTATGGATTCATACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGC 538
                       ************************************************************

consensus_11628#0      AACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATT 1373
consensus_11628#1      AACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATT 598
                       ************************************************************

consensus_11628#0      ATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCT 1433
consensus_11628#1      ATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCT 658
                       ************************************************************

consensus_11628#0      TGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATC 1493
consensus_11628#1      TGTTGGGCTTCTTCAGGACAAAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATC 718
                       ************************************************************

consensus_11628#0      TATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCG 1553
consensus_11628#1      TATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATATTTGTCCGTAGCGTTGATCG 778
                       ************************************************************

consensus_11628#0      TTTCAACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATT 1613
consensus_11628#1      TTTCAACGAACAGAGTGAGCAT-------------------------------------- 800
                       **********************                                      

consensus_11628#0      GCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTG 1673
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      TTTTTCTCTTGTAGATTACTCTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAA 1733
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      TGCAAATTTGCATGTGTATCGGCTGTACCTGTAAATATAGAAGAAAGCAGAATCTTTTGC 1793
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      TTTGTGATTTTTCTTTTCTTTTTGTGTACAGACCACAGATACAAGCAACAGAGTATCAGA 1853
consensus_11628#1      ------------------------------------------------------------
                                                                                   

consensus_11628#0      ACTACTTGGTTTCTGGTGACAAAAAAAAGGA 1884
consensus_11628#1      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)