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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1312 fasta sequence
[AGCCAAACTCCCCCACCTCGCCGCCCGATCCGACGCGCCGGCGGCCGCACGCAGCTCTCCGGT-GGCCGTCGAACCATCCGCGCGGGCGGCCACGTCGCTCGCCGTAGCCGCCCACAAACGAAGGATTCGGCGCATCCCGCCGGCTCGCGGTGATCTGACAGGAGGAAGGCCGTAGGCGTTAGCTGCTAGTCTCTGCGTTGGGCGATGTCGAGGGTTCGCGACAGGACCGAGGACTTCAAGGAGTCCGTCCGCGTCGCCGCGCTCGGCCATGGGTACACGGAGTCTCAGTTAGCCGTGCTCATGTCTTCCTTCATCATCCGGAAGCCGGCCCCCAAATTACCCTTTACAAAGGCTGCAATCAAGACGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTATGTTGACTTGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTTTTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCCATGAAGAAAAAGGTGGAAGTACAAAGACATGGCTTGGTACAAGCGATGAGAGCTCCCGGTTGGATTTGATAGCTCACCAGCAT-GGCGTGGTTTTGATTTTGAGTGAGCGTCTTCACTCAGTAACTGTGCAATTTGATCGTCTTCGGACCATGCGTTTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAACGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACCATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAAGATCA-GGAGGTCTCTACTGCA-CCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTT-CAGGT-GGAGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATCAGTCAATCCATGTCTCGCTAGGTTTACTGGCCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCTGCCGCAAACGTGACAAAAAA]
[+] EMBL AK067634 [AGCCAAACTCCCCCACCTCGCCGCCCGATCCGACGCGCCGGCGGCCGCACGCAGCTCTCCGGT GGCCGTCGAACCATCCGCGCGGGCGGCCACGTCGCTCGCCGTAGCCGCCCACAAACGAAGGATTCGGCGCATCCCGCCGGCTCGCGGTGATCTGACAGGAGGAAGGCCGTAGGCGTTAGCTGCTAGTCTCTGCGTTGGGCGATGTCGAGGGTTCGCGACAGGACCGAGGACTTCAAGGAGTCCGTCCGCGTCGCCGCGCTCGGCCATGGGTACACGGAGTCTCAGTTAGCCGTGCTCATGTCTTCCTTCATCATCCGGAAGCCGGCCCCCAAATTACCCTTTACAAAGGCTGCAATCAAGACGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTATGTTGACTTGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTTTTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCCATGAAGAAAAAGGTGGAAGTACAAAGACATGGCTTGGTACAAGCGATGAGAGCTCCCGGTTGGATTTGATAGCTCACCAGCAT GGCGTGGTTTTGATTTTGAGTGAGCGTCTTCACTCAGTAACTGTGCAATTTGATCGTCTTCGGACCATGCGTTTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAACGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACCATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAAGATCA GGAGGTCTCTACTGCA CCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTT CAGGT GGAGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATCAGTCAATCCATGTCTCGCTAGG ]
[+] EMBL AU162461 [ TCCGGTAAGCCGTCGAANCATCCGCGCGGGCGGCCACGTCGCTCGCCGTAGCCGCCCACAAACGAAGGATTCGGCGCATCCCGCCGGCTCGCGGTGATCTGACAGGAGGAAGGCCGTANG TTTAGCTGCTAGTCTCTGCGTTGGGCGATGTCGAGGGTTCGCGACAGGACCGAGGACTTCAAGGAGTCCGTCCGCGTCGCCGCGCTCGGCCATGGGTACACGGAGTCTCAGTTAGCCGTGCTCATNTCTTCCTTCATCATCCGGAAGCCG ]
[+] EMBL CF309579 [ CTTTACAAA GCTGCAATCAAGACGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTATGTTGACTTGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTTTTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCCATGAAGAAAAAGGTGGAAGTACAAAGACATGGCTTGGTACAAGCGATGAGAGCTCCCGGTTGGATTTGATAGCTCACCAGCATGGGCGTGGTTTTGATTTTGAGTGAGCGTCTTCACTCAGTAACTGTGCAATTTGATCGTCTTCGGACCATGCGTTTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAACGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACTATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAAGATCAGGGAGGTCTCTACTGCA CCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTT CAGGTGGGAGTTGACAAATCTTCTTG ]
[+] EMBL AU197471 [ CGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTATGTTGACTTGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTTTTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCC ]
[-] EMBL CF309580 [ TTTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAACGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACTATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAAGATCA GGAGGTCTCTACTGCA CCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTT CAGGT GGAGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATCAGTCAATCCATGTCTCGCTAGGTTTACTGGCCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCTGCCGCAAACGTGACAAAAAA]
[+] EMBL OSC5611 [ GCTGCTGAACCATCTAAGCCAAACCTTGTATTAAAATCTGATGTTTCAAAGGTTGAAGATCA GGNGGTCTCTACTGCA CCACTAAGNGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTT CAGGT GGNGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAGCNGATCCNGTATTTATATGACCAGGCNGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCNGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATNNGTC ]
[-] EMBL AU065391 [ AGGTTTCNACTGCACCCACTTAGAGTTCAAGACCAACTCTTGGATGATGAAACAAGAGCTCTTCCAGGT GGAGTTGACAAATCTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCTACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATCAGTCA ]
consensusID : consensus_11640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[TGACTGGACTGAAGGAGTAGAAAATCCTGTCTCGCTAGGTTTACTGGCCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCTGCCGCAAACGTGACAAAGCACGTTTTGTGAAATGGACAAGATGCTAACCATTTTTTGAAATGCAAAGATGCAACCTTACGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAACAAAAAAAAAAAAAAAGAAAAAAAA]
[+] EMBL CF308636 [TGACTGGACTGAAGGAGTAGAAAATCCTGTCTCGCTAGGTTTACTGGCCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCTGCCGCAAACGTGACAAAGCACGTTTTGTGAAATGGACAAGATGCTAACCATTTTTTGAAATGCAAAGATGCAACCTTACGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAACAAAAAAAAAAAAAAAGAAAAAAAA]
consensusID : consensus_11640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence
[GGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTCACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTTCCATTCTGAAAGTGGATCAAGTTATCANGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAANAA]
[+] EMBL CA766737 [GGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTCACCTTTTCCGTTCTCTTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTTCCATTCTGAAAGTGGATCAAGTTATCANGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAANAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11640#0 AGCCAAACTCCCCCACCTCGCCGCCCGATCCGACGCGCCGGCGGCCGCACGCAGCTCTCC 60
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GGTGGCCGTCGAACCATCCGCGCGGGCGGCCACGTCGCTCGCCGTAGCCGCCCACAAACG 120
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 AAGGATTCGGCGCATCCCGCCGGCTCGCGGTGATCTGACAGGAGGAAGGCCGTAGGCGTT 180
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 AGCTGCTAGTCTCTGCGTTGGGCGATGTCGAGGGTTCGCGACAGGACCGAGGACTTCAAG 240
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GAGTCCGTCCGCGTCGCCGCGCTCGGCCATGGGTACACGGAGTCTCAGTTAGCCGTGCTC 300
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 ATGTCTTCCTTCATCATCCGGAAGCCGGCCCCCAAATTACCCTTTACAAAGGCTGCAATC 360
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 AAGACGCTTGAGAGTATCAGGGAACTGGAGAAGTTTATTGTGAAGCATAGGAAGGACTAT 420
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GTTGACTTGCATCGCACCACGGAGCAAGAAAGGGACAACATTGAGCATGAGGTCAGTGTT 480
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 TTTGTAAAAGCATGCAAGGAACAAATAGATATCCTAAAGAACAGGATCCATGAAGAAAAA 540
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GGTGGAAGTACAAAGACATGGCTTGGTACAAGCGATGAGAGCTCCCGGTTGGATTTGATA 600
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GCTCACCAGCATGGCGTGGTTTTGATTTTGAGTGAGCGTCTTCACTCAGTAACTGTGCAA 660
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 TTTGATCGTCTTCGGACCATGCGTTTTCAAGATGCTATTAACAGAGCGATGCCAAGAAAA 720
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 CGGATTCAGAAGAAACGAGAAACCAAAGCTGCTGAACCATCTAAGCCAAACCTTGTATTA 780
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 AAATCTGATGTTTCAAAGGTTGAAGATCAGGAGGTCTCTACTGCACCACTAAGAGTTCAA 840
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GAACAACTCTTGGATGATGAAACAAGAGCTCTTCAGGTGGAGTTGACAAATCTTCTTGAT 900
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 GCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCA 960
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 ACACATGTTCTACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCT 1020
consensus_11640#2 ------------------------------------------------------------
consensus_11640#1 ------------------------------------------------------------
consensus_11640#0 ACAAACAATGTGGAGCGTGGGAACAAGGAGCTATCCCAGGCGATCCAG-CGCAACAGCAG 1079
consensus_11640#2 --------------------------------------GGCGATCCAG-CGCAACAGCAG 21
consensus_11640#1 -------------------TGACTGGACTGAAGGAGTAGAAAATCCTGTCTCGCTAGGTT 41
* **** * * * **
consensus_11640#0 CAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGT-TCTCTTTCTGG 1138
consensus_11640#2 CAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTCACCTTTTCCGT-TCTCTTTCTGG 80
consensus_11640#1 TACTGG--CCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCT 99
* * * **** * * * * * ** * * * *** ** *** **
consensus_11640#0 ATTG---GTACAGCAAATGAAGCTT-ATGTAAACGCCGTGATTTTTTTTCCCATTCTGAA 1194
consensus_11640#2 ATTG---GTACAGCAAATGAAGCTT-ATGTAAACGCCGTGATTTTTTTTTCCATTCTGAA 136
consensus_11640#1 GCCGCAAACGTGACAAAGCACGTTTTGTGAAATGGACAAGATGCTAACCATTTTTTGAAA 159
* **** * * ** ** ** * * *** * ** **
consensus_11640#0 AGTGGAT---CAAGTTATCAG-TCAATCCATGTCTCGCTAGGTTTACTGGCCTTTTACGT 1250
consensus_11640#2 AGTGGAT---CAAGTTATCANGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 193
consensus_11640#1 TGCAAAGATGCAACCTTACGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 219
* * *** * * *** * * * *
consensus_11640#0 GCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTCTGCCGCAAACGTGACAAAA 1310
consensus_11640#2 AAAAAAAAAAAGGAAAANAA---------------------------------------- 213
consensus_11640#1 AAATAAAAAAACAAAAAAAAAAAAAAAGAAAAAAAA------------------------ 255
* * * * *
consensus_11640#0 AA 1312
consensus_11640#2 --
consensus_11640#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||