These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1501 fasta sequence [CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGTTCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTACTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTTGCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCTTCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAACTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGTTTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGGTTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTGACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGGTATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGACGAGAGAGAGAAACCTCA-ACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC-GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC-GGGGGATTTAAGTGTGCAGACT-GATAATCTTGAT-GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG-TTAGAGGGGATATCA-GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA-GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTANAATTGCATTGTGCAAAAA] [+] EMBL CB670189 [CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGTTCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTACTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTTGCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCTTCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAACTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGTTTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGGTTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTGACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGAT ] [+] EMBL AU162544 [ GCAAAGAAACAACAGTGCTGCCAATTCTTCACTCGGTTTGGCGAGTGCGAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCNAAAGTGACTNTATGTACTAAATTTCTTAAAGGATTGTGTNCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGAGTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGANAGTGAACGTGAATGCNCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTG ] [-] EMBL CB673746 [ AAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGGTATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGACGAGAGAGAGAAACCTCA ACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC GGGGGATTTAAGTGTGCAGACT GATAATCTTGAT GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG TTAGAGGGGATATCA GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTGCATTGCAGAAGAAAGAAATGGCAATTTATTT ] [+] EMBL AU032319 [ tgCCATCAAGNTGCGCCAAGG AAG CTCTTTAGCCG ACNCGATAGCG GAAACCTCA ACGTGTTTCCACTGATGGGNATTTGGCCTTTATCAGCTTGGATGATGATGCGGGATGAAGATGTTACAGCTTNAGATGCCNCAGATGATATACCGCTGATGGAATTGGCCTCNGGGGGATTTAAGTGTGCAGACTCGATAATCTTGATGGCACTAATCAAGCCACTTCGGNTCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGNTTAGAGGGGATATCANGATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCANGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACCNACAATCATTTACATTGCANAANAAANAAATGGCAATTTATTTANAATTGCATTGTGCAAAAA] [-] EMBL CB640262 [ GAGAGAAA CTCACACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC GGGGGATTTAAGTGTGCAGACT GATAATCTTGAT GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG TTAGAGGGGATATCA GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTAGAATT ] [+] EMBL CA766582 [ AGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTA CCTTCTTCGGAAGTT CATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATT ] consensusID : consensus_11643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence [GAAGACGAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCA-CTTCGGATCATGAGAACA-GCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC-AACTTGATACA-ACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC--ATCATTTAC-TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAAAAAA] [+] EMBL BI812124 [GAAGACGAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCA CTTCGGATCATGAGAACA GCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACA ACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAACAAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAA ] [+] EMBL BI812017 [ ACGAGAGAGAGAAACCTC AACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAGTTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCACCTTCGGATCATGAGAACACGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC AACTTGATACACACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC ATCATTTAC TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAA ] [+] EMBL BI813391 [ GAT AT CGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAA CCA CTTCGGATCATGAGAACA GCAAGAGTTTGATAGCTAAGCCAGTTAGAGGGGATAACAGTAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC AACTTGATACA ACAGGATAGGT CAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC ATCATTTAC TTGCAGAAGAAAGAAATGGCAATTTATTTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11643#0 CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGT 60 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTA 120 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 CTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTT 180 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 GCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCT 240 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAA 300 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 CTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGT 360 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGG 420 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTG 480 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 ACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCAC 540 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 AAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAAC 600 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 ATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTC 660 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCT 720 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 GTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAG 780 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 AGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGG 840 consensus_11643#1 ------------------------------------------------------------ consensus_11643#0 TATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGAC 900 consensus_11643#1 ------------------------------------------------------GAAGAC 6 ****** consensus_11643#0 GAGAGAGAGAAACCTCAA-CGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGA 959 consensus_11643#1 GAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGA 66 ****************** ********* ******************************* consensus_11643#0 TGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGA 1019 consensus_11643#1 TGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGA 126 ************************************************************ consensus_11643#0 ATTGGACTCGGGGGATTTAAGTGTGCAGACTGATAATCTTGATGCACTAATCAAGCCACT 1079 consensus_11643#1 ATTGGACTCGGGGGATTTAAGTGC-CAGACTGATAATCTTGATGCACTAATCAAGCCACT 185 *********************** *********************************** consensus_11643#0 TCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATATCAGATTT 1139 consensus_11643#1 TCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATA-------- 237 **************************************************** consensus_11643#0 TCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAG 1199 consensus_11643#1 --------------------------------------------------------ACAG 241 **** consensus_11643#0 CAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAG 1259 consensus_11643#1 CAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAA-CTTGATACAACAGGATAG 300 ***************************************** ****************** consensus_11643#0 GTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCA 1319 consensus_11643#1 GTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCA 360 ************************************************************ consensus_11643#0 TTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTT 1379 consensus_11643#1 TTGTTTTTCTACC-TTCTTCGGAAGTTC-ATTTTTGTTTGTCATGTACATATAGTTATTT 418 ************* ** *********** ******************************* consensus_11643#0 TTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGA 1439 consensus_11643#1 TTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGA 478 *********************************** ************************ consensus_11643#0 ACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTANAATTGCATTGTGCAAA 1499 consensus_11643#1 ACA-TCATTTAC-TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAAAAAA-------- 528 *** ******** ****************************** ** * consensus_11643#0 AA 1501 consensus_11643#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||