Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11658 cluster # 11658       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11658#0 length = 1216 sequences # 8  
consensus_11658#1 length = 764 sequences # 1  

consensusID : consensus_11658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1216
fasta sequence
                              [CGATTTCTAGGGCGAACACCCAGCTGGAAAAGGCAGAATCTTCTGCTCGTAGACGTGAAGCCGAGAATGAACAGCTCAGGATACAGATGGAAGCTGCAAAGCGGCATGCACTAGTGTCTGCAACAAATATTTTGGAGCTTTCAAAGAAGGATGAGAACAGTCATAAAAGGTCTCAGCATTGGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGA---CTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT-GGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGTGTTGGTTATACATGATGTACAGAGCGTTGTCTTCTGAATGCTTTTCCTTTTGGTTTATCTTTTTTTCGCTGAGCATTGCAGGCAATCAGAACTAGTTCTTGTCAGGTAAGAGTATCAAAATGTGTTTGAATTTTGATGCTTCTGAGCTATTCCATTTATCCTGGAATCCTCCCCGAAAGGAGGTTTCGGTTCATGG]

[+] EMBL AK064405             [CGATTTCTAGGGCGAACACCCAGCTGGAAAAGGCAGAATCTTCTGCTCGTAGACGTGAAGCCGAGAATGAACAGCTCAGGATACAGATGGAAGCTGCAAAGCGGCATGCACTAGTGTCTGCAACAAATATTTTGGAGCTTTCAAAGAAGGATGAGAACAGTCATAAAAGGTCTCAGCATTGGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGACTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATAACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGA   CTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT GGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAAGGGATAATGGGATG                                                                                                                                                                                                       ]
[+] EMBL CF307026             [CGATTTCTAGGGCGAACACCCAGCTGGAAAAGGCAGAATCTTCTGCTCGTAGACGTGAAGCCGAGAATGAACAGCTCAGGATACAGATGGAAGCTGCAAAGCGGCATGCACTAGTGTCTGCAACAAATATTTTGGAGCTTTCAAAGAAGGATGAGAACAGTCATAAAAGGTCTCAGCATTGGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB682236             [                                                                                                                                                                   TAAAAGGTCTCAGCATTGGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGA   CTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTGTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGA                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB620849             [                                                                                                                                                                                         TCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAACGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCGTCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTG TTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT GGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGT                                                                                                                                                                                                    ]
[-] EMBL CB620809             [                                                                                                                                                                                                                                       AGCTATCTCAGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAACGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCGTCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTG TTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT GGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGTGTTGGTTAT                                                                                                                                                                                           ]
[+] EMBL CA767152             [                                                                                                                                                                                                                                                                                                                                ATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAACGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCGTCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCTTCATATACACCATTTTGGTTTCTCTTTTTATTTG GTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGANAGTGGGTNAACTTTGAGAATAATATACATGGGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATG                                                                                                                                                                                                       ]
[+] EMBL CB679761             [                                                                                                                                                                                                                                                                                                                                                                                    AGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGA   CTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT GGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGTGTTGGTTATACATGATGTACAGAGCGTTGTCTTCTGAATGCTTTTCCTTTTGGTTTATCTTTTTTTCGCTGAGCATTGCAGGCAATCAGAACTAGTTCTTGTCAGGTAAGAGTATCAAAATGTGTTTGAATTTTGATGCTTCTGAGCTATTCCATTTATCCTGGAATCC                           ]
[-] EMBL CB679762             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTGCCCCTCCCAAGTGGGGAGCAGACCACAGAACCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTGGATTTTGATGACATACAGCGTGACCGGGAGTGGGTCATGTCCCTGACCGAGGAGATGTCGGTTGTCTTCTTCCCTTGCGCGCCCCAGGTGGTTTGCGCGAAATGCAATGCCCTCCCTGCCAAGCAAGGGATGAAGGAGTGCCCTTCGTGCCGGACCCCCCTCCAGTGCAGGGTGTGCGCCCCCCTCGCCGGTTGCTAGA   CTTCTTCATATACACCACTCCGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGCATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACAT GGTTGGTCGCGCATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGTGTTGGTTATACATGATGTACAGAGCGTTGTCTTTTGAATGCTTTTCCTTTCGGTTTATCTTTTTTTCGCTGAGCATTGCAGGCAATCAGAACTAGTTTTTGTCAGGTAAGAGTATCAAAACGTGTTTGAATTTTGATGCTTTTGAGCTATTCCATTTATCCTGGAATCCTCCCCGAAAGGAGGTTTCGGTTCATGG]


>consensus_11658#0 CGATTTCTAGGGCGAACACCCAGCTGGAAAAGGCAGAATCTTCTGCTCGTAGACGTGAAG CCGAGAATGAACAGCTCAGGATACAGATGGAAGCTGCAAAGCGGCATGCACTAGTGTCTG CAACAAATATTTTGGAGCTTTCAAAGAAGGATGAGAACAGTCATAAAAGGTCTCAGCATT GGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTC AGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGA GGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGA GGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGA ACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGA AGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAA CCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATA TAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCA TGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCG CGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCC CCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCATATACACCAT TTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGAT GGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAAT ATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGT GTTGGTTATACATGATGTACAGAGCGTTGTCTTCTGAATGCTTTTCCTTTTGGTTTATCT TTTTTTCGCTGAGCATTGCAGGCAATCAGAACTAGTTCTTGTCAGGTAAGAGTATCAAAA TGTGTTTGAATTTTGATGCTTCTGAGCTATTCCATTTATCCTGGAATCCTCCCCGAAAGG AGGTTTCGGTTCATGG



consensusID : consensus_11658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 764
fasta sequence
                              [GATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTTTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTTTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGGGAATGGATAATGGGATGGGTGTTGGTTAAAAACCAAAAAAGG]

[-] EMBL CB682237             [GATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTTTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTTTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAATATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGGGAATGGATAATGGGATGGGTGTTGGTTAAAAACCAAAAAAGG]


>consensus_11658#1 GATCAAATCCAGGCAAGGTGGAGGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGT GTAAGCTTAGAGAAGAAAGAGAGGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAAC TTCCTGCATCTCAAAGCGGAGAACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTC GAGCAGCAGATTTCGCAGCTGAAGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCC AAGTGGGGAGCAGACAACAGAACCAACGCGTTGCGCCTTTTTGAAGGGAGAAAGAATGGC AGCGCTCAAATTTTGGCCAATATAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATA CAGCGTGACCGGGAGTGCGTCATGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCT TGCGCGCACCAGGTGGTTTGCGCGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAG GAGTGCCCATCGTGCCGGACCCCCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGC TAGACTTCTTCATATACACCATTTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTT GCTGAGCTTGCCTTGGATGGATGGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGA GTGGTTAAACTTTGAGAATAATATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGA GGGAATGGATAATGGGATGGGTGTTGGTTAAAAACCAAAAAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11658#0      CGATTTCTAGGGCGAACACCCAGCTGGAAAAGGCAGAATCTTCTGCTCGTAGACGTGAAG 60
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      CCGAGAATGAACAGCTCAGGATACAGATGGAAGCTGCAAAGCGGCATGCACTAGTGTCTG 120
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      CAACAAATATTTTGGAGCTTTCAAAGAAGGATGAGAACAGTCATAAAAGGTCTCAGCATT 180
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      GGGAATCTGAAAGAGCCCTGTTGCAAGAGGATCTTGCTGCTCAAAGGAACAAGCTATCTC 240
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      AGGTCCACCAGCAACTTCATCATGCTAAAGAGCAGAAGGATCAAATCCAGGCAAGGTGGA 300
consensus_11658#1      --------------------------------------GATCAAATCCAGGCAAGGTGGA 22
                                                             **********************

consensus_11658#0      GGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGA 360
consensus_11658#1      GGCAAGAAGAGGCTGGAAAGATTGAGGCAATTGCCCGTGTAAGCTTAGAGAAGAAAGAGA 82
                       ************************************************************

consensus_11658#0      GGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGA 420
consensus_11658#1      GGGATCAGATTGAGACATCACTGAGGTCGGAAGAGAACTTCCTGCATCTCAAAGCGGAGA 142
                       ************************************************************

consensus_11658#0      ACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGA 480
consensus_11658#1      ACGATACGCAAAGATACAAGAGCCAGATACGTGCTCTCGAGCAGCAGATTTCGCAGCTGA 202
                       ************************************************************

consensus_11658#0      AGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAA 540
consensus_11658#1      AGGTATCCTTGGACTCGTTGAGGGTTGGTGCCCCTCCCAAGTGGGGAGCAGACAACAGAA 262
                       ************************************************************

consensus_11658#0      CCAACGCGTTGCGCCTTTCTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATA 600
consensus_11658#1      CCAACGCGTTGCGCCTTTTTGAAGGGAGAAAGAATGGCAGCGCTCAAATTTTGGCCAATA 322
                       ****************** *****************************************

consensus_11658#0      TAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCA 660
consensus_11658#1      TAGCAGCGGTACCCCAGGATTTCGATTTTGACGACATACAGCGTGACCGGGAGTGCGTCA 382
                       ************************************************************

consensus_11658#0      TGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTCTGCG 720
consensus_11658#1      TGTGCCTGAGCGAGGAGATGTCGGTCGTCTTCCTCCCTTGCGCGCACCAGGTGGTTTGCG 442
                       ******************************************************* ****

consensus_11658#0      CGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCC 780
consensus_11658#1      CGAAATGCAATGACCTCCATGACAAGCAAGGGATGAAGGAGTGCCCATCGTGCCGGACCC 502
                       ************************************************************

consensus_11658#0      CCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCATATACACCAT 840
consensus_11658#1      CCATCCAGCGCAGGGTGTGCGCCCGCCTCGCCGGTTGCTAGACTTCTTCATATACACCAT 562
                       ************************************************************

consensus_11658#0      TTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGAT 900
consensus_11658#1      TTTGTTTTCTCTTTTTATTTGTTTTTTTTGATTGATTTGCTGAGCTTGCCTTGGATGGAT 622
                       ************************************************************

consensus_11658#0      GGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAAT 960
consensus_11658#1      GGATGGAAGATTGGATGGAATAATGAGTGGTGGTGAGAGTGGTTAAACTTTGAGAATAAT 682
                       ************************************************************

consensus_11658#0      ATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGATAATGGATAATGGGATGGGT 1020
consensus_11658#1      ATACATGGTTGGTCGCACATCAATCAAAACCCCGCAGAGGGAATGGATAATGGGATGGGT 742
                       ***************************************  *******************

consensus_11658#0      GTTGGTTATACATGATGTACAGAGCGTTGTCTTCTGAATGCTTTTCCTTTTGGTTTATCT 1080
consensus_11658#1      GTTGGTTAAAAACCAAAAAAGG-------------------------------------- 764
                       ******** * *  *   *  *                                      

consensus_11658#0      TTTTTTCGCTGAGCATTGCAGGCAATCAGAACTAGTTCTTGTCAGGTAAGAGTATCAAAA 1140
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      TGTGTTTGAATTTTGATGCTTCTGAGCTATTCCATTTATCCTGGAATCCTCCCCGAAAGG 1200
consensus_11658#1      ------------------------------------------------------------
                                                                                   

consensus_11658#0      AGGTTTCGGTTCATGG 1216
consensus_11658#1      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)