cluster # 11659

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Oryza sativa
cluster # 11659 cluster # 11659 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11659#0 length = 848 sequences # 8

consensus_11659#1 length = 180 sequences # 1

consensusID : consensus_11659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 848
fasta sequence

                              [TGACAGACTGTAAACTGATCTTCATGGGTTGTCAAATCACAACGAATAGAACAGCACCGACACAATTTTTTGCTAACAGGAACTGAAAGCTGCACTA-TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA-TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG-AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA-TGGCCATATGTTTTGTTGCCATGTTTCTTCTGTTGAGGTTGTC-TTACTT-TGTGATCTCTCTTTGGCATGGCATGCTATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTCCTCTGAAAACGTGCAGATACAACGTCGACATCCTGGAGGTATTCAGGCCGATTCATAGATATGAATGCAAGCTTCCACTTGGAGAATTCCTCATCAGGAACTCGAAGTTTTTTCTGAATTCGTTCTAATATC]

[+] EMBL CB619426             [TGACAGACTGTAAACTGATCTTCATGGGTTGTCAAATCACAACGAATAGAACAGCACCGACACAAGGTTATGCTAACAGGAACTGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA TGGCCATATGTTTTGTTGCCATGTTTCTTCTGTTGAGGTTGTC TTACTT TGTGATCTCTCTTTGGCATGGCATGCTATCCAGACGAGGCCTTTGTTCAGCGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTCCTCT                                                                                                                                ]
[-] EMBL BU666942             [                                                                 TTTTTT  TAACAGGAACTGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAA TGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAAGTTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAA ATCTACCTTATCCTAGCGGGG CATCACACTCGACACAATTGTTTTG CCGGAAACAAGATGGAAAGCCTTGAAAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGG GTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAAGTGGCCATATGTTTGGTTGCCATGTTTCTTCTG TGAGGTTGTCGTTACTTGTGTGATCTCTCTTTGGAGTGGGATG TATCCAGACGAGGC  TTGTTCAGCGCTTCAAGCCCAG TATAA                                                                                                                                                                                                                                                                         ]
[-] EMBL BI810241             [                                                                 TTTTTT  TAACAGGAACTGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAA TGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAAGTTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAA ATCTACCTTATCCTAGCGGGG CATCACACTCGACACAATTGTTTTG CCGGAAACAAGATGGAAAGCCTTGAAAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGG GTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAAGTGGCCATATGTTTGGTTGCCATGTTTCTTCTG TGAGGTTGTCGTTACTTGTGTGATCTCTCTTTGGAGTGGGATG TATCCAGACGAGGC  TTGTTCAGCGCTTCAAGCCCAG TATAAATCTTCTCAA TATAAA TTTCACAGGggttc                                                                                                                                                                                                                                         ]
[-] EMBL BQ908173             [                                                               ttTTTTTTGCTAACAGGAACTGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA TGGCCATATGTTTTGTTGCCATGTTTCTTCgg                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AK058717             [                                                                                 ACTGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA TGGCCATATGTTTTGTTGCCATGTTTCTTCTGTTGAGGTTGTC TTACTT TGTGATCTCTCTTTGGCATGGCATGCTATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATC                                                                                                                                        ]
[+] EMBL CB642191             [                                                                                   TGAAAGCTGCACTA TCTGGCAAATTATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA TGGCCATATGTTTTGTTGCCATGTTTCTTCTGTTGAGGTTGTC TTACTT TGTGATCTCTCTTTGGCATGGCATGCTATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTCCTCTGAAAACGTGCAGATACAACGTCGACATCCTGGAGGTATTCAGGCCGATTCATAGATATGAATGCAAGCTTCCACTTGGAGAATTCCTCATCAGGAACTCGAAGTTTTTTCTGAATTCGTTCTAATATC]
[+] EMBL CB673645             [                                                                                       AGCTGCACTATTCCCTTAAAAGATTCTCTTACATTTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCCCCCACTGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAA TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAAACAAGATGGAAAGCCTTG AAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAA TGGCCATATGTTTTGTTGCCATGTTTCTTCTGGTGAGGGTGTC TTACTT TGTGATCTCTCTTTGGCATGGCATGCTATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTC                                                                                                                                    ]
[-] EMBL AA751178             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATCTCTC TTGGCAT GCATGCTAT CAGGC A GCC TTGTTCA GNC TCAAGCCCAGCTAT AATCTTC CAATTAT AATTTTCACAGGC TCTCAAAAGTGTGAC ATTCTGATTGGCTGTATAAGACCTTTTTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTCCTCTGAAAACGTGCAGATACAAC                                                                                                             ]




>consensus_11659#0
TGACAGACTGTAAACTGATCTTCATGGGTTGTCAAATCACAACGAATAGAACAGCACCGA
CACAATTTTTTGCTAACAGGAACTGAAAGCTGCACTATCTGGCAAATTATTCTCTTACAT
TTTATCAATAGACATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTCCCAC
TGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTATAATTC
TGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACACAAATAA
AGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGCCCGGAA
ACAAGATGGAAAGCCTTGAAAAAAAATCCCTGACGCCCACTACATCACGAGTAAGCTGCA
CCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAATGGCCATATGTTTTGT
TGCCATGTTTCTTCTGTTGAGGTTGTCTTACTTTGTGATCTCTCTTTGGCATGGCATGCT
ATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAATTATAAA
TTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTTTTGGTG
TTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTCTCCTCT
GAAAACGTGCAGATACAACGTCGACATCCTGGAGGTATTCAGGCCGATTCATAGATATGA
ATGCAAGCTTCCACTTGGAGAATTCCTCATCAGGAACTCGAAGTTTTTTCTGAATTCGTT
CTAATATC

consensusID : consensus_11659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [GCTAACAGGAACTGAAAGCTGCACTATCTGGCCAAATTTATTCTCTTACCATTTTATCACTAGACCATGGCAAATTGGAACCAAACAAACCCCATTATACGATTCTCCCANGTGCTCCANGGCTAACAGNAACGGGAGAAGCAAATAAAGCAATCAGTCACGGNTATAACTTCTGTATAC]

[-] EMBL BQ908388             [GCTAACAGGAACTGAAAGCTGCACTATCTGGCCAAATTTATTCTCTTACCATTTTATCACTAGACCATGGCAAATTGGAACCAAACAAACCCCATTATACGATTCTCCCANGTGCTCCANGGCTAACAGNAACGGGAGAAGCAAATAAAGCAATCAGTCACGGNTATAACTTCTGTATAC]




>consensus_11659#1
GCTAACAGGAACTGAAAGCTGCACTATCTGGCCAAATTTATTCTCTTACCATTTTATCAC
TAGACCATGGCAAATTGGAACCAAACAAACCCCATTATACGATTCTCCCANGTGCTCCAN
GGCTAACAGNAACGGGAGAAGCAAATAAAGCAATCAGTCACGGNTATAACTTCTGTATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11659#0      TGACAGACTGTAAACTGATCTTCATGGGTTGTCAAATCACAACGAATAGAACAGCACCGA 60
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      CACAATTTTTTGCTAACAGGAACTGAAAGCTGCACTATCTGGCAAA--TTATTCTCTTAC 118
consensus_11659#1      -----------GCTAACAGGAACTGAAAGCTGCACTATCTGGCCAAATTTATTCTCTTAC 49
                                  ******************************** **  ************

consensus_11659#0      -ATTTTATCAATAGAC-ATGGAAAATTGGAACCAACACCAAACCCCATTATACGATTCTC 176
consensus_11659#1      CATTTTATCACTAGACCATGGCAAATTGGAACCAAA--CAAACCCCATTATACGATTCTC 107
                        ********* ***** **** *************   **********************

consensus_11659#0      CCAC-TGCTCCAAGGCTAACAGAAACGGGAGAAGCAAATAAAGCAATCAGTCACGGCTAT 235
consensus_11659#1      CCANGTGCTCCANGGCTAACAGNAACGGGAGAAGCAAATAAAGCAATCAGTCACGGNTAT 167
                       ***  ******* ********* ********************************* ***

consensus_11659#0      AA-TTCTGTATACATGCCCCTACCAAAATCTTTTTCTTATGTACCAGCTTTGCTCTACAC 294
consensus_11659#1      AACTTCTGTATAC----------------------------------------------- 180
                       ** **********                                               

consensus_11659#0      AAATAAAGCAACATCTACCTTATCCTAGCGGGGCCATCACACTCGACACAATTGTTTTGC 354
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      CCGGAAACAAGATGGAAAGCCTTGAAAAAAAATCCCTGACGCCCACTACATCACGAGTAA 414
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      GCTGCACCAACGGCGTCAACCAGCGGGAAGCAATATAGGCCTCAGCGTAATGGCCATATG 474
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      TTTTGTTGCCATGTTTCTTCTGTTGAGGTTGTCTTACTTTGTGATCTCTCTTTGGCATGG 534
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      CATGCTATCCAGACGAGGCCTTTGTTCAGGGCTTCAAGCCCAGCTATAAATCTTCTCAAT 594
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      TATAAATTTTCACAGGCTTCTCAAAAGTGTGACGATTCTGATTGGCTGTATAAGACCTTT 654
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      TTGGTGTTGTGTCAGTATGTTCCAAGCCAAGGTATTGTTCCCAAGCTCCATAAACATCTC 714
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      TCCTCTGAAAACGTGCAGATACAACGTCGACATCCTGGAGGTATTCAGGCCGATTCATAG 774
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      ATATGAATGCAAGCTTCCACTTGGAGAATTCCTCATCAGGAACTCGAAGTTTTTTCTGAA 834
consensus_11659#1      ------------------------------------------------------------
                                                                                   

consensus_11659#0      TTCGTTCTAATATC 848
consensus_11659#1      --------------