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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2697 fasta sequence
[AGACCAGACAACCCACCTCACCTCACCTCTCCACCCATCTCGGCGTCGTCGTCGTCATCTCCGCCGCTCCACCAATCCCCCTTCCGCTAGTGTGCTACACATCACTGCTGCTCCCCTCCACCCCAACCCCACCACGTCAGTGGAGACCCCCCCGATCGCCGCCACCTCGCCGCGCCCGGCGATGCTCGCCTCCTCCGCCTCCGGCCAAATGGCGGCGCTCTGCTCCCCCTCGCCGACGCTCCCCACCGCCTCCCTCCTCCTCCTGCGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGAAAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGACTTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGATCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGAAGAATTATTTCAAATTTACACTCATTCAGAAAGCATTGCACTTGTTGTGGACAGTCCTCAATTCTTTAACCGGCTTGCAGAATCTTTTATTTAGAGGATTAACGCAAGATTTATTGTGCTACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGACTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATATACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAACCTCTTGCATCAGATTAAAAATTTGTGGGATTTTGTACCAGCAGTACCTGGTGATAGGTTCCTAAGCATGCTTCCACCATGGCATGCATATGAGCGTGCTAGCGAGTACTTCATCTTCACTTATGGAATTCAACAAGTTTACACGACTGTCAAGTACCTGAAGGAAGATTTGCAACGATACCAACCTCAATACATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGAGACAGATATCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAAGTTTGCTATATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATCCCGTCAAACCATCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCACTTCTGTGGCCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAATTGGGATTTCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAATTTTTTGAGGCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTGTTGTAGCTGCTAGACGGCCATTCTGTAACGTTCTTGGCACAGTTGGCCACCCAGTAAAGCACACGGAAATCAAGGTTGTGGATATGGAGACTGGTGAGGTTCTTCCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTACAAATAAAGTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCACCTCACTGTCCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGATACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAGCAGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGCGAATTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCATTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTG-CTATATGATGAGCTGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAGCATTATTTCTCCTCCATATCGATGTGATCTCACCACAATATATGCATCGGGAGGGACAATTTGTGGACGATGCACTGTGTTACTGTGACTGAATTTCGTAGAAC]
[+] EMBL AK073441 [AGACCAGACAACCCACCTCACCTCACCTCTCCACCCATCTCGGCGTCGTCGTCGTCATCTCCGCCGCTCCACCAATCCCCCTTCCGCTAGTGTGCTACACATCACTGCTGCTCCCCTCCACCCCAACCCCACCACGTCAGTGGAGACCCCCCCGATCGCCGCCACCTCGCCGCGCCCGGCGATGCTCGCCTCCTCCGCCTCCGGCCAAATGGCGGCGCTCTGCTCCCCCTCGCCGACGCTCCCCACCGCCTCCCTCCTCCTCCTGCGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGAAAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGACTTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGATCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGAAGAATTATTTCAAATTTACACTCATTCAGAAAGCATTGCACTTGTTGTGGACAGTCCTCAATTCTTTAACCGGCTTGCAGAATCTTTTATTTAGAGGATTAACGCAAGATTTATTGTGCTACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGACTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATATACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAACCTCTTGCATCAGATTAAAAATTTGTGGGATTTTGTACCAGCAGTACCTGGTGATAGGTTCCTAAGCATGCTTCCACCATGGCATGCATATGAGCGTGCTAGCGAGTACTTCATCTTCACTTATGGAATTCAACAAGTTTACACGACTGTCAAGTACCTGAAGGAAGATTTGCAACGATACCAACCTCAATACATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGAGACAGATATCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAAGTTTGCTATATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATCCCGTCAAACCATCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCACTTCTGTGGCCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAATTGGGATTTCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAATTTTTTGAGGCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTGTTGTAGCTGCTAGACGGCCATTCTGTAACGTTCTTGGCACAGTTGGCCACCCAGTAAAGCACACGGAAATCAAGGTTGTGGATATGGAGACTGGTGAGGTTCTTCCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTACAAATAAAGTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCACCTCACTGTCCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGATACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAGCAGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGCGAATTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCATTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTG CTATATGATGAGCTGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAGCATTATTTCTCCTCCATATCGATGTGATCTCACCACAATATATGCATCGGGAGGGACAATTTGTGGACGATGCACTGTGTTACTGTGACTGAATTTCGTAGAAC]
[+] EMBL BU572377 [ CATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGAGACAGATATCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAAGTTTGCTATATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATTCCGTCAAACCATCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCACTTCTGTGGCCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAATTGGGATTTCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAATTTTTTGAGGCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTGTTGTAGCTGCTAGACGGCCATTCTGTAACGGTCTTGGCACAGTTGGCCACCCAGTAAAGCACACGGAAATCAAGGGTGTGGATATGGAGACTGGTGAGGGTCTTCCAGATGGGTCAAAGGGGGTTGTGAAAGTCAGAGGACCCCAAGTGATGAAG ]
[-] EMBL CB643559 [ AAAGGGGGTTGTGAAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTACAAATAAAGTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCACCTCACTGTCCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGATACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAGCAGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGGGAATTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCATTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTG CTATATGATGAGCTGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTTTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGCCAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGAT ]
[+] EMBL CA998107 [ CCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGATACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAGCAGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGCGAATTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCATTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTG CTATATGATGAGCTGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGAT ]
[+] EMBL AU101498 [ TTTTGNACTTGCCTATATGATGAGCTGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGNCCCGATTCTAATTGTCGATGAACCATTTNCGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGNCNAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGNGTGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAGCATTATTTCTCCTCCATATCGATGTGATCTCACCACAATAaaaa ]
[+] EMBL AU225463 [ gccgcTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAGCATTATTTCTCCTCCATATCGATGTGATCTCACCACAATATATGCATCGGGAGGGACAgcgg ]
consensusID : consensus_11683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1517 fasta sequence
[CCACTCCCACCCCAGCCTCCGCCCCCACCCCCGTGTGCCGGCGGCGGCGGTGTAGATGGTCGTGGCGTGGTGGCCGTCGCGAGGATTTCGGGTGCAGAGTACGGTGACTTGGGTGCCGCACTGAATCTATGATTCGATTTTACCTGTTTTGGTTGGATGGAGGAGAACCGGAGAAGTGGCGTTTCGAGTCAGCAGGTTGTCTTTGAAACATTTACTCAGGTGATGTTGCCAGTTGCCACACTATTATATACCAGTGGAACACCAAAAGGAGTGATGCTTATCTGCTGAAATCTCTTGCATCTGGTCGAAAGAGCAGTAACATTCACTTCTTTTACCTGAAAGTAATATTGAAATATAAACTGTACTTTTCTTGATGTGATTTCTTGTCATGTGAACATCAGAACCCCTGTTCCTCTTCTATCCAAATTAAGTTCTATGCAGTTATGTTTGTAGATGAAAACTTTCTGGGATAGTATTAGCAGTACCTGGTGATAGTTTCCTAAGCATGCTTCCACCATGGCATGTGTATGAACGTGTTATCAAGTACTTCATCTTAGCTTATGGAATTCAACATGTTTACATGATTGTCAAGTATCTGAAGGTAACATTTCAGGCATCGTCATAGTTAGTACCATCAAGGGTCTTATGATGTCATTAAGGATTTATTGCGACCAATTACATGACCTAATGCTGTACTATTCTTTAGCAGCTTACTGAACGCTGCAAAGTTGAGTTTGATATATTATAAGCAAATGTAACAATCGTCAGGTCCAGACCTTCTAATCTACTTTAGGGAAACCCAAGTGTCATACTTGATATGATAGGGTTCCTTCCCTTTACAGTATTCTCCTTTCTGGTCACTATTTTCTATTTCTTATGAAGATGCTGATGTTGTTCAGGTGTTTTGACTTCTACTCTATTGATAGGAAGTTTTGCAACGGTACCAACCTCAATACACTGTATCAGTACCACTGGTCTATGAGACTCTCTACAGGGAATAGTCCTATTGAGCAATCCCGTCAAACCATCATTTATTGTGCATATGGTCAATTGGCTATTGGCAAGAATTGTTGCTGCACTTCTGTGGTCTTTGCATAATCTGGCAAAGAAGTTAGTATTCAAGAAAATCCATTCTGCAATTGGGATTCCAAAGGTTCTTGGCACAGTTGGTACCCAGTAAAGCACACGGAAATCAAGGTAGTGAGCATAGAGAATAGTGAGGTTCTCGCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCTCAAGTGATGAAGGGATATTACAAGGATCATTTTTTCCAGTTTACTGATGCCAAGTTTTAACTATAAATTAAATTGAGCTGTAAACAGTTGTTTGGGTCAAGGTGAACACATTTTTGGGTAGAAATGCACATCAGATTATATATCTTGGTAAAGACATAATGCTGCAGGTCACAGATAACACTTGCTTATTGTAAACATCATAGTTGTAGCAATGATGAGGTTCTAGCAATGGCTAAAAGAAAGCCTATTCT]
[+] EMBL AK065469 [CCACTCCCACCCCAGCCTCCGCCCCCACCCCCGTGTGCCGGCGGCGGCGGTGTAGATGGTCGTGGCGTGGTGGCCGTCGCGAGGATTTCGGGTGCAGAGTACGGTGACTTGGGTGCCGCACTGAATCTATGATTCGATTTTACCTGTTTTGGTTGGATGGAGGAGAACCGGAGAAGTGGCGTTTCGAGTCAGCAGGTTGTCTTTGAAACATTTACTCAGGTGATGTTGCCAGTTGCCACACTATTATATACCAGTGGAACACCAAAAGGAGTGATGCTTATCTGCTGAAATCTCTTGCATCTGGTCGAAAGAGCAGTAACATTCACTTCTTTTACCTGAAAGTAATATTGAAATATAAACTGTACTTTTCTTGATGTGATTTCTTGTCATGTGAACATCAGAACCCCTGTTCCTCTTCTATCCAAATTAAGTTCTATGCAGTTATGTTTGTAGATGAAAACTTTCTGGGATAGTATTAGCAGTACCTGGTGATAGTTTCCTAAGCATGCTTCCACCATGGCATGTGTATGAACGTGTTATCAAGTACTTCATCTTAGCTTATGGAATTCAACATGTTTACATGATTGTCAAGTATCTGAAGGTAACATTTCAGGCATCGTCATAGTTAGTACCATCAAGGGTCTTATGATGTCATTAAGGATTTATTGCGACCAATTACATGACCTAATGCTGTACTATTCTTTAGCAGCTTACTGAACGCTGCAAAGTTGAGTTTGATATATTATAAGCAAATGTAACAATCGTCAGGTCCAGACCTTCTAATCTACTTTAGGGAAACCCAAGTGTCATACTTGATATGATAGGGTTCCTTCCCTTTACAGTATTCTCCTTTCTGGTCACTATTTTCTATTTCTTATGAAGATGCTGATGTTGTTCAGGTGTTTTGACTTCTACTCTATTGATAGGAAGTTTTGCAACGGTACCAACCTCAATACACTGTATCAGTACCACTGGTCTATGAGACTCTCTACAGGGAATAGTCCTATTGAGCAATCCCGTCAAACCATCATTTATTGTGCATATGGTCAATTGGCTATTGGCAAGAATTGTTGCTGCACTTCTGTGGTCTTTGCATAATCTGGCAAAGAAGTTAGTATTCAAGAAAATCCATTCTGCAATTGGGATTCCAAAGGTTCTTGGCACAGTTGGTACCCAGTAAAGCACACGGAAATCAAGGTAGTGAGCATAGAGAATAGTGAGGTTCTCGCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCTCAAGTGATGAAGGGATATTACAAGGATCATTTTTTCCAGTTTACTGATGCCAAGTTTTAACTATAAATTAAATTGAGCTGTAAACAGTTGTTTGGGTCAAGGTGAACACATTTTTGGGTAGAAATGCACATCAGATTATATATCTTGGTAAAGACATAATGCTGCAGGTCACAGATAACACTTGCTTATTGTAAACATCATAGTTGTAGCAATGATGAGGTTCTAGCAATGGCTAAAAGAAAGCCTATTCT]
consensusID : consensus_11683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[CGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGAAAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGACTTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGATCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGAAGAATTATTTCAAATTTACACTCATTCAGAAAGAATCTTTTATTTCGAGGATTAACGCAAGATTTATTGTGCTACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGACTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATATACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAA]
[+] EMBL CB643558 [CGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGAAAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGACTTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGATCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGAAGAATTATTTCAAATTTACACTCATTCAGAAAGAATCTTTTATTTCGAGGATTAACGCAAGATTTATTGTGCTACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGACTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATATACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAA]
consensusID : consensus_11683#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[GATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTANAAAAAAAAAAAAAAAA]
[+] EMBL CA756384 [GATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTANAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11683#0 AGACCAGACAACCCACCTCACCTCACCTCTCCACCCATCTCGGCGTCGTCGTCGTCATCT 60
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 CCGCCGCTCCACCAATCCCCCTTCCGCTAGTGTGCTACACATCACTGCTGCTCCCCTCCA 120
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 CCCCAACCCCACCACGTCAGTGGAGACCCCCCCGATCGCCGCCACCTCGCCGCGCCCGGC 180
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 GATGCTCGCCTCCTCCGCCTCCGGCCAAATGGCGGCGCTCTGCTCCCCCTCGCCGACGCT 240
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 CCCCACCGCCTCCCTCCTCCTCCTGCGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCC 300
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCG 360
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 CCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCT 420
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 AGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGG 480
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 AAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGA 540
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 AAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGAC 600
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGT 660
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGA 720
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGA 780
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 AGAATTATTTCAAATTTACACTCATTCAGAAAGCATTGCACTTGTTGTGGACAGTCCTCA 840
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 ATTCTTTAACCGGCTTGCAGAATCTTTTATTTAGAGGATTAACGCAAGATTTATTGTGCT 900
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 ACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGA 960
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 CTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGA 1020
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 ACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATA 1080
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAACCTCTTGCA 1140
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ------------------------------------------------------------
consensus_11683#0 TCAGATTAAAAATTTGTGGGATTTTGTACCAGCAGTACCTGGTGATAGGTTCCTAAGCAT 1200
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 --------------------------------------------CCACTCCCACCCCAGC 16
consensus_11683#0 GCTTCCACCATGGCATGCATATGAGCGTGCTAGCGAGTACTTCATCTTCACTTATGGAAT 1260
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 CTCCGCCCCCACCCCCGTGTGCCGGCGGCGGCGGTGTAGATGGTCGTGGCGTGGTGGCCG 76
consensus_11683#0 TCAACAAGTTTACACGACTGTCAAGTACCTGAAGGAAGATTTGCAACGATACCAACCTCA 1320
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TCGCGAGGATTTCGGGTGCAGAGTACGGTGACTTGGGTGCCGCACTGAATCTATGATTCG 136
consensus_11683#0 ATACATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGAGACAGAT 1380
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 ATTTTACCTGTTTTGGTTGGATGGAGGAGAACCGGAGAAGTGGCGTTTCGAGTCAGCAGG 196
consensus_11683#0 ATCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAAGTTTGCT 1440
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TTGTCTTTGAAACATTTACTCAGGTGATGTTGCCAGTTGCCACACTATTATATACCAGTG 256
consensus_11683#0 ATATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATCCCGTCAAACC 1500
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 GAACACCAAAAGGAGTGATGCTTATCTGCTGAAATCTCTTGCATCTGGTCGAAAGAGCAG 316
consensus_11683#0 ATCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCACTTCTGTG 1560
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TAACATTCACTTCTTTTACCTGAAAGTAATATTGAAATATAAACTGTACTTTTCTTGATG 376
consensus_11683#0 GCCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAATTGGGAT 1620
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TGATTTCTTGTCATGTGAACATCAGAACCCCTGTTCCTCTTCTATCCAAATTAAGTTCTA 436
consensus_11683#0 TTCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAATTTTTTGA 1680
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TGCAGTTATGTTTGTAGATGAAAACTTTCTGGGATAGTATTAGCAGTACCTGGTGATAGT 496
consensus_11683#0 GGCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTGTTGTAGC 1740
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 TTCCTAAGCATGCTTCCACCATGGCATGTGTATGAACGTGTTATCAAGTACTTCATCTTA 556
consensus_11683#0 TGCTAGACGGCCATTCTGTAACGTTCTTGGCACAGTTGGCCACCCAGTAAAGCACACGGA 1800
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 ------------------------------------------------------------
consensus_11683#1 GCTTATGGAATTCAACATGTTTACATGATTGTCAAGTATCTGAAGGTAACATTTCAGGCA 616
consensus_11683#0 AATCAAGGTTGTGGATATGGAGACTGGTGAGGTTCTTCCAGATGGTTCAAAGGGGGTTGT 1860
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 -----------------------------------------------------CGTCGCC 7
consensus_11683#1 TCGTCATAGTTAGTACCATCAAGGGTCTTATGATGTCATTAAGGATTTATTGCGACCAAT 676
consensus_11683#0 GAAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTACAAATAA 1920
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 GCCGCCTCCGCCTCCTCCACCCACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCG 67
consensus_11683#1 TACATGACCTAATGCTGTACTATTCTTTAGCAGCTTACTGAACGCTGCAAAGTTGAGTTT 736
consensus_11683#0 AGTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCACCTCACTG 1980
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 CCCGCCGCCGGGGCCGCCACCACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCG 127
consensus_11683#1 GATATATTATAAGCAAATGTAACAATCGTCAGGTCCAGACCTTCTAATCTACTTTAG--G 794
consensus_11683#0 TCCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGA 2040
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 CGGCGTCCCCCTCCGCGGGTTCCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCAT 187
consensus_11683#1 GAAACCCAAGTGTCATACTTGATATGATAGGGTTCCTTCCCTTTACAGTATTCTCCTTTC 854
consensus_11683#0 TACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAG 2100
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 TACTTGAGAGTGCTCTATTACCTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTG 247
consensus_11683#1 TGGTCACTATTTTCTATTTCTTATGAAGATGCTGATGTTGTTCAGGTGTTTTGACTTCTA 914
consensus_11683#0 CAGGAGTGACTTGATTAATCAGATAGTTGT-TGTTGGCCAGGACAAGCGGCGAATTGGTG 2159
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 TTCCAGACATTTGGAGGACAGCAGCAGAAA-AATATGCTGACCGTGTAGCTTTGGTAGAT 306
consensus_11683#1 CTCTATTGATAGGAAGTTTTGCAACGGTACCAACCTCAATACACTGTATCAGTACCACTG 974
consensus_11683#0 CTCTTATCGTTCCCAACTATGATGAAGTTCTAG-CAACAGCTAAAAGGAAGTCCATTCTT 2218
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 CCTTACCATGAACCTCCTTCAGAATTGACTTAT-AAGCAGCTTGAACAAGAAATATTGGA 365
consensus_11683#1 GTCTATGAGACTCTCTACAGGGAATAGTCCTATTGAGCAATCCCGTCAAACCATCATTTA 1034
consensus_11683#0 GATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTGCTATATGATGAGCTGAGA 2278
consensus_11683#3 ------------------------------------------------------------
consensus_11683#2 TTTTTCTCAAGGTCTAAGGGCCATTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGC 425
consensus_11683#1 TTGTGCATATGGTCAATTGGCTATTGGCAAGAATTGTTGCTGCACTTCTGTGGTCTTTGC 1094
consensus_11683#0 ACTTGGATGGTG--GATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATG----AA 2332
consensus_11683#3 -----GATGGTG--GATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATG----AA 49
consensus_11683#2 TGATAACTCATGCCGATGGCTAGTTGCAGATCAAGG-AATCATGGCTACTGGTGCTATAA 484
consensus_11683#1 ATA-ATCTGGCAAAGA-AGTTAGTATTCAAGAAAATCCATTCTG-CAATTGGGATTCCAA 1151
* ** * * * * ** * * **
consensus_11683#0 CCATTTACGGTGGATAATG-GTTTGCTAAC----ACCCACTTTGAAATTACGGAGGGACA 2387
consensus_11683#3 CCATTTACGGTGGATAATG-GTTTGCTAAC----ACCCACTTTGAAATTACGGAGGGACA 104
consensus_11683#2 ATGTTGTTAGAGGAACAAG-ATCTTCTGATGAAGAATTATTTCAAATTTACACTCATTCA 543
consensus_11683#1 AGGTTCTTGGCACAGTTGGTACCCAGTAAAGCACACGGAAATCAAGGTAGTGAGCATAGA 1211
** * * * * * * * * * * *
consensus_11683#0 AAGT-----GACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGT 2442
consensus_11683#3 AAGT-----GACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGT 159
consensus_11683#2 GAAA-----GAATCTTTTATTTCGAGGATTAACGCAAGATTTATTGTGCTACTTTGGGGT 598
consensus_11683#1 GAATAGTGAGGTTCTCGCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCTCAAGT 1271
* * * * * * * * **
consensus_11683#0 GAGCATGAGTACATACAGACAGTAGTT-TGCATT--------TTCTTTGCCTTGG--AAG 2491
consensus_11683#3 GAGCATGAGTACATACAGACAGTAGTT-TGCATT--------TTCTTTGCCTTGG--AAG 208
consensus_11683#2 GAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGACTTCA--AGG 656
consensus_11683#1 GATGAAGGGATATTACAAGGATCATTTTTTCCAGTTTACTGATGCCAAGTTTTAACTATA 1331
** * * ** * * ** * * ** *
consensus_11683#0 ACATCTCTTGAGT-AGACAGTA--GCTAGAACATACAATAATGCAACCATTTTAAAATT- 2547
consensus_11683#3 ACATCTCTTGAGT-AGACAGTA--GCTAGAACATACAATAATGCAACCATTTTAAAATT- 264
consensus_11683#2 ATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAACAAGGTC 716
consensus_11683#1 AATTAAATTGAGCTGTAAACAGTTGTTTGGGTCAAGGTGAACACATTTTTGGGTAGAAAT 1391
* * * * * * * * * *
consensus_11683#0 ---------TTTTTGGAG---TGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAG-- 2593
consensus_11683#3 ---------TTTTTGGAG---TGAAATGGAATAAGGTTGCTGATTCAGTANAAAAAAA-- 310
consensus_11683#2 AGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATATACCAG-- 774
consensus_11683#1 GCACATCAGATTATATATCTTGGTAAAGACATAATGCTGCAGGTCACAGATAACACTTGC 1451
* * * ** * * *** *
consensus_11683#0 -CATTATTTCTCCTCCATATCGATGTGATCTCACCACAATATATGCATCGGGAGGGACAA 2652
consensus_11683#3 -AAAAAAAAA-------------------------------------------------- 319
consensus_11683#2 -TGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAA-------------- 819
consensus_11683#1 TTATTGTAAACATCATAGTTGTAGCAATGATGAGGTTCTAGCAATGGCTAAAAGAAAGCC 1511
consensus_11683#0 TTTGTGGACGATGCACTGTGTTACTGTGACTGAATTTCGTAGAAC 2697
consensus_11683#3 ---------------------------------------------
consensus_11683#2 ---------------------------------------------
consensus_11683#1 TATTCT--------------------------------------- 1517
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||