These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1379 fasta sequence [TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGTGTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCTGCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGTAGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGGCGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCATGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTGTT] [-] EMBL AU101365 [TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCC ] [-] EMBL AU162234 [ tgGAAAAATACACAATACTGACACAATTACAAACGTATANACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACT GCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCANAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCC ] [-] EMBL C73601 [ CATGTTGACCTCTCCTCGCGTTNACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGAACGGCNGCATACATATG TTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGNACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCC ] [+] EMBL CB647803 [ CAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACG ] [-] EMBL AK063126 [ ACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAG ] [-] EMBL CB647802 [ CCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGTGTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCTGCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGTAGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGGCGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCATGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTGTT] [-] EMBL BI799721 [ TCCCGCCGTGCGCCAGGGCGGGGAGGTCGTA ATGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGG GCTGTCCGGCGCG ] consensusID : consensus_11684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACAGATACGNATACAGAAGTAGTCAGCACGNAGCACGGCCGNATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCCACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCACTGCAGAGGNTCCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTATCGGTNCTNG] [-] EMBL AU197431 [TTTTTTTTTTTTTTTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACAGATACGNATACAGAAGTAGTCAGCACGNAGCACGGCCGNATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCCACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCACTGCAGAGGNTCCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTATCGGTNCTNG] consensusID : consensus_11684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCGCNGANCGCGNGCTGTCCGNCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT] [-] EMBL OSC633 [GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCGCNGANCGCGNGCTGTCCGNCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11684#0 TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTA 60 consensus_11684#1 -----------------------------------------------TTTTTTTTTTTTT 13 consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACA 120 consensus_11684#1 TTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACA 73 consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 GATACGCATACAGAAGTAGTCAGCACGTAGCACGGC-CGCATACATATGTT-TCGACCAA 178 consensus_11684#1 GATACGNATACAGAAGTAGTCAGCACGNAGCACGGC-CGNATACATATGTT-TCGACCAA 131 consensus_11684#2 -----GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCG 55 * * * *** * ** * * *** * ** ** ** *** * * consensus_11684#0 CCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCC 238 consensus_11684#1 CCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCC 191 consensus_11684#2 CNGANCGCGNGCT---GTCCGNCGCGTAGAGGC-GCACGAC-GGTGAAGCCGTTCTCGCG 110 * ** * * * *** ** * * * *** ** * *** * ** consensus_11684#0 ACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCAC 298 consensus_11684#1 ACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCAC 251 consensus_11684#2 GAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCA-TAC 169 * * * * ** *** * * * * ** ** *** ** ** consensus_11684#0 TGCAGAGGAT-CCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTAT 357 consensus_11684#1 TGCAGAGGNT-CCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTAT 310 consensus_11684#2 TCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT-- 227 * ** * * **** * ** * * * * * ** * * * consensus_11684#0 CGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGT 417 consensus_11684#1 CGGTNCTNG--------------------------------------------------- 319 consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCC 477 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 GGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGC 537 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCT 597 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACT 657 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGC 717 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCC 777 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 GTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGG 837 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGT 897 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 GTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCT 957 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 GCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGT 1017 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 AGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGG 1077 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCG 1137 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCA 1197 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAA 1257 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 CCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCA 1317 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTG 1377 consensus_11684#1 ------------------------------------------------------------ consensus_11684#2 ------------------------------------------------------------ consensus_11684#0 TT 1379 consensus_11684#1 -- consensus_11684#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||