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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1379 fasta sequence
[TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGTGTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCTGCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGTAGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGGCGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCATGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTGTT]
[-] EMBL AU101365 [TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCC ]
[-] EMBL AU162234 [ tgGAAAAATACACAATACTGACACAATTACAAACGTATANACCCCTCTATCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACT GCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCANAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCC ]
[-] EMBL C73601 [ CATGTTGACCTCTCCTCGCGTTNACAACCAATTACTGTACAGATACGCATACAGAAGTAGTCAGCACGTAGAACGGCNGCATACATATG TTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGNACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCC ]
[+] EMBL CB647803 [ CAGAAGTAGTCAGCACGTAGCACGGCCGCATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCCACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACG ]
[-] EMBL AK063126 [ ACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCACTGCAGAGGATCCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTATCGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGTTGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCCGGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGCCGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCTTCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACTCCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAG ]
[-] EMBL CB647802 [ CCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGCCCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCCGTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGGCGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGTGTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCTGCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGTAGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGGCGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCATGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTGTT]
[-] EMBL BI799721 [ TCCCGCCGTGCGCCAGGGCGGGGAGGTCGTA ATGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCGCGAGCGCGG GCTGTCCGGCGCG ]
consensusID : consensus_11684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACAGATACGNATACAGAAGTAGTCAGCACGNAGCACGGCCGNATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCCACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCACTGCAGAGGNTCCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTATCGGTNCTNG]
[-] EMBL AU197431 [TTTTTTTTTTTTTTTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACAGATACGNATACAGAAGTAGTCAGCACGNAGCACGGCCGNATACATATGTTTCGACCAACCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCCACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCACTGCAGAGGNTCCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTATCGGTNCTNG]
consensusID : consensus_11684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence
[GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCGCNGANCGCGNGCTGTCCGNCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT]
[-] EMBL OSC633 [GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCGCNGANCGCGNGCTGTCCGNCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCATACTCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11684#0 TTTTTTTTTCGATGAAAAATACACAATACTGACACAATAACAAACGTATACACCCCTCTA 60
consensus_11684#1 -----------------------------------------------TTTTTTTTTTTTT 13
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TCTCCAGGCTCGTGCTATACATGTTGACCTCTCCTCGCGTTCACAACCAATTACTGTACA 120
consensus_11684#1 TTTTTTTTTTTTTGCTATACATGTTGACCTCTCCTCGNGTTCANAACCAATTACTGTACA 73
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 GATACGCATACAGAAGTAGTCAGCACGTAGCACGGC-CGCATACATATGTT-TCGACCAA 178
consensus_11684#1 GATACGNATACAGAAGTAGTCAGCACGNAGCACGGC-CGNATACATATGTT-TCGACCAA 131
consensus_11684#2 -----GGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCACCAGTTGNCCGCNCG 55
* * * *** * ** * * *** * ** ** ** *** * *
consensus_11684#0 CCGATGGTATGTTCAGACCCGACGGGAATTCTCTGCATTACCGCTGATATAGGATGAGCC 238
consensus_11684#1 CCGATGGTATGTTCAGACCCGACGGGAATTNTCTGCATTACCGTTGATATAGGATGAGCC 191
consensus_11684#2 CNGANCGCGNGCT---GTCCGNCGCGTAGAGGC-GCACGAC-GGTGAAGCCGTTCTCGCG 110
* ** * * * *** ** * * * *** ** * *** * **
consensus_11684#0 ACTATTATATAGGATCAAACTACTGGCTGCCGCTCGTAATTGCTACTGTACCAACAGCAC 298
consensus_11684#1 ACTATTATATAGGNTCAAACTACTGGCTGCCGNTCGNAATTNCTACTGTACCAACAGCAC 251
consensus_11684#2 GAGCATCTCGGTGACCTTGCTCGCGGCGGNAGGTTGTCGCNGCTCATGCCCCAGCA-TAC 169
* * * * ** *** * * * * ** ** *** ** **
consensus_11684#0 TGCAGAGGAT-CCGTGTCCGTGTCAAATACGGGCATGGAAGCTAATGGGGTAGACCCTAT 357
consensus_11684#1 TGCAGAGGNT-CCGTGTCCGTTTNAAANACGGGCATGGAAGCTAATGGGNTAGACCCTAT 310
consensus_11684#2 TCCAACCGCTGCCGTTCCTGTCTCAGATTCCATTTCAACCTTTGTCAAATTAAAGCTT-- 227
* ** * * **** * ** * * * * * ** * * *
consensus_11684#0 CGGTGCTGGGGTAGAAGAGGCCCCAATTCTGCTCCACGCCGGCCTCCTTGAGGTTCTCGT 417
consensus_11684#1 CGGTNCTNG--------------------------------------------------- 319
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TGAACATGGCGAACACGTACGTCTCCGTCTTCTTCCCGGGATGCCGCGGCGTGCCATTCC 477
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 GGACGTGCCTCACCAGGTTCTGGTTGAATGTCATGGCGTTCTCCACCGACGCGCCCACGC 537
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CGCCCGCCGTCGGCCACCCGGTCTCAGACACCACCACCCTCACGTTCTCTCCCCCGAGCT 597
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TCGCCACCGCCGTGTACAGCGCGTCCACCGTCGCGTCGAACTGGTTCTGGTACCCGTACT 657
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CCCCGTCCTGCACCACCGCGCCGCTCGCCGTGAACAGCGCGAAGCTGATGTCCATGCCGC 717
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CCGGGTTGTATGAGTAGATGAAGTATGGGTACAGGTTGGCCAGCAGCGGCGCGTGCGTCC 777
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 GTTCCAGGAATGGGATCACGTAGCTCATGAACGGCTTCGCCTCGTCGGTGAACTCGCCGG 837
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CGGACGGCGGGATGTGGACGCCGATGGTGGCCTGGGAGATCGACGTCGTCACCTTGATGT 897
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 GTCCCAGCCCGGCCGCCGCGAGCGCGGCGTGGACGTTCTCCATGGCCGGGACGAGGAGCT 957
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 GCGTGTCGGCGCCGGCGACCTCGTTGCCCACGACGACGAACCGGAACAGGACCGTCGGGT 1017
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 AGGCCTGGATGTTCTCGCGGATCCAGGCGGCCGCGGCGGCGGTCCCGCCGTGCGCCAGGG 1077
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CGGGGAGGTCGTAGTTGGGCGCGCCGACGACGACGCGGATGCCCGTGCCGCCGAGCGCCG 1137
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CGAGCGCGGCGCTGTCCGGCGCGTAGAGGCGCACGACGGTGAAGCCGTTCTCGCGGAGCA 1197
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TCTCGGTGACCTTGCTCGCCGGCGGCAGGTTGTCGCCGCTCATGCCCCAGCATACTCCAA 1257
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 CCGCTGCCGTTCCTGCTAGGATGGAGGCAAAGACTGCAAGTAGCAACGCCATGTCGAGCA 1317
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TGGAAGCAGCTGAAGACGCCATTCTCAAGCTCGACTCAACCTGTGACATCTGACCTGTTG 1377
consensus_11684#1 ------------------------------------------------------------
consensus_11684#2 ------------------------------------------------------------
consensus_11684#0 TT 1379
consensus_11684#1 --
consensus_11684#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||