These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCCGGNTTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC] [+] EMBL OSS13519A [CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCCGGNTTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC] consensusID : consensus_1169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGACGATGACGCGGGGACGATGCCGTGGGCGCGGCGCGGTACGGTGGCGCTTGCAGGTGGCGCGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTTNCTCGAC] [+] EMBL C73900 [CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAGCAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGACGATGACGCGGGGACGATGCCGTGGGCGCGGCGCGGTACGGTGGCGCTTGCAGGTGGCGCGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTTNCTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1169#0 CTCTCGCCTTTCCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAG 60 consensus_1169#1 -----------CCTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTCGTGGGTGCAAGAAG 49 ************************************************* consensus_1169#0 CAGAGAAGGAGCAACGCNTGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCT 120 consensus_1169#1 CAGAGAAGGAGCAACGCNGGCTGAGATCGAGCGCGAGGATGTGGCAGAGATACAGGTTCT 109 ****************** ***************************************** consensus_1169#0 TGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCC-CGGNTTGACAGGGGGTGCGAC 179 consensus_1169#1 TGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCGNGTNGACAGGGGGTGCGAC 169 ************************************** ** * *************** consensus_1169#0 GATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGG 239 consensus_1169#1 GATGACGCGGGG-ACGATGCCGTGGGCG-CGGCGCGGTACGGTGGCGCTTGCAGGTGGCG 227 ********** ** * ** *** ***** ** * ** * *** ** * consensus_1169#0 GGAAAGGNTGGTGTNGCTNGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATG 299 consensus_1169#1 CGGGCGCTTGGAGTACCTTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCA 287 * * *** ** ** * ** * * * ** ** * ** * ** consensus_1169#0 ACGGGCGGGTTCACGTCGGCGGTGGTCNCGCGAGGGCGGGTTCAGCACGGTNGTACC 356 consensus_1169#1 AGG----------CGTCGAACGTGCTTNCTCGAC----------------------- 311 * * ***** *** * ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||