These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 832 fasta sequence [TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATATCATATGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG-AAG-AAAAAAATAC-------AAAAAAAAAAGCTCTCGCTATGGTCTGAAA-ATGAAAA--ATG-CAG-CAAAAGAGA-TTTGT-CACCAAATTC-GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG-TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA-GCAGCGG-TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT] [+] EMBL CF325599 [TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATATCATATGCTGCAGTTGAGCTACAACAAATTTGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAGAAAAAAAATAC AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATATGCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCG ] [-] EMBL BI804453 [ ttttttttTGGTGGAGTTGAGCTAAAAAAAAATCGGATTTTATGACTGAGGTAGCAGTGG GACTGTGATACATAATGAAAAGGGG AG AAAAAAATACCAAAAAAAAAAAAAAAAGCTCTCGCTATGGTCTGAAACATGCAAACCATGCCAGCCAAAAGAGATTTTGTCCACCAAATTCGGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGGTTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGGATCCCGAATCTG CCGGGCTTCTCGTCGCTTATGCCAAGCAGATACTGGAACCTTGACAGCTTTTCAGGCg ] [+] EMBL CB634048 [ CAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATAC AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ] [+] EMBL CB666942 [ CAAAATCCGATTTTATGACTGAGGGAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAAA AAAAAAATAC AAAAAAAAAAGCTCTCCCTATGGGCTGAAA ATGAAAA ATG CCG CAAAAAAAA TTTGT CACCAAATTC GGGGCCAATTTCTGTCTATACAAACAGTTAACCCCCGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAACTACAATA ACAGCGG GTGGCGCCACAGCACCAAGTATGGGAGGGCCTCAACTCTGCTGGCTACCTAACAAAAAAAAACCTTCACATCTCCCTCCCTAAAATACCAATTCATCCCCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGGCCGGCCTTCTCGTCGCTTATGCCAAGCAAATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAAATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCCAAACAGGCACAGCCCCGTCCCATGCAAACAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAACAAAACAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTA ] [+] EMBL CB634186 [ TCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATACA AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAAAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ] [+] EMBL CB632925 [ TCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATACA AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ] [-] EMBL CB666941 [ GCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCNTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT] consensusID : consensus_11700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [TTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACACAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCACCCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCCAGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGACAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTACCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNCGTAGAAAGATACNCGANATTACATTCCGTACACCTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGCCGTGCCGAGTTGGCGGGGCAAATCCGCG] [-] EMBL BQ908655 [TTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACACAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCACCCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCCAGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGACAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTACCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNCGTAGAAAGATACNCGANATTACATTCCGTACACCTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGCCGTGCCGAGTTGGCGGGGCAAATCCGCG] consensusID : consensus_11700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TTTTTTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAGAAAAAAAATACAAAAAAAAAAAGCTCTCGCTATGGTCTGAAAATGAAAAATGCAGCAAAAGAGATTTGTCACCAAATTCGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATAGCAGCGGTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGGATAGTGT] [-] EMBL AU101656 [TTTTTTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAGAAAAAAAATACAAAAAAAAAAAGCTCTCGCTATGGTCTGAAAATGAAAAATGCAGCAAAAGAGATTTGTCACCAAATTCGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATAGCAGCGGTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGGATAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11700#0 TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATA 60 consensus_11700#2 ----------------------------------------------------TTTTTTTT 8 consensus_11700#1 --------------------------------------------------------TTTT 4 * consensus_11700#0 TCATATGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 120 consensus_11700#2 TTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 68 consensus_11700#1 TTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 64 * * ******************************************************* consensus_11700#0 CTGTGATACATAATGAA-----AAGGGGAAGAAAAAAA-----TACAAAAAAAA------ 164 consensus_11700#2 CTGTGATACATAATGAA-----AAGGGGAAGAAAAAAAA----TACAAAAAAAA------ 113 consensus_11700#1 CTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACA 124 *************** * * *** *** * ** * *** * ** ** consensus_11700#0 -AA-GCTCTCGCTATGGTCTGAAA-ATGAAAAATG---CAGC-AAAAGAG-ATTTGTCAC 216 consensus_11700#2 -AAAGCTCTCGCTATGGTCTGAAA-ATGAAAAATG---CAGC-AAAAGAG-ATTTGTCAC 166 consensus_11700#1 CAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCAC 184 ** ******************** ****** * * **** ******* *** ***** consensus_11700#0 CAAA---TTCGGTGCCAAT-TTCT---GTCTA--TACAA-ACAGTT-AACG--CACGTC- 262 consensus_11700#2 CAAA---TTCGGTGCCAAT-TTCT---GTCTA--TACAA-ACAGTT-AACG--CACGTC- 212 consensus_11700#1 CCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCC 244 * ** * ****** * **** **** **** ****** **** ****** consensus_11700#0 AGGATTATGCGTTGCT---TCTCAA-AACCATA---TGCCAGCGCCTAGCTACAA-TAG- 313 consensus_11700#2 AGGATTATGCGTTGCT---TCTCAA-AACCATA---TGCCAGCGCCTAGCTACAA-TAG- 263 consensus_11700#1 AGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGA 304 *********** ** ****** ******* * * ************** *** consensus_11700#0 CAGCGGT-TGGCGCCACAG-CACCAAGT--ATGGTAGGTCCTCAACTC-TGC--TGGCTA 366 consensus_11700#2 CAGCGGT-TGGCGCCACAG-CACCAAGT--ATGGTAGGTCCTCAACTC-TGC--TGGCTA 316 consensus_11700#1 CAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTA 364 ******* *********** ******* ***************** ** ****** consensus_11700#0 CCTAACAA-AAAAAGACC--TTCACA-TCTCCCTCCCTAG-AATACCAATTCATCCTCCT 421 consensus_11700#2 CCTAACAA-AAAAAGACC--TTCACA-TCTCCCTCCCTAGGAATACCAATTCATCCTCCT 372 consensus_11700#1 CCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNC--GTAGAAAGATACNCGANA 422 ******** ********* ***** ****** ** ** ** * * consensus_11700#0 CTTCAGTTGCAACGG-ATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTC 480 consensus_11700#2 CTTCAGTTGCAACGGGATAGTGT------------------------------------- 395 consensus_11700#1 TTACATTCCGTACAC-CTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGC-C 480 * ** * ** * ** * consensus_11700#0 TCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTC 540 consensus_11700#2 ------------------------------------------------------------ consensus_11700#1 GTGCCGAGTTGGCGGGGCAAAT-CCGCG-------------------------------- 507 consensus_11700#0 TTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTC 600 consensus_11700#2 ------------------------------------------------------------ consensus_11700#1 ------------------------------------------------------------ consensus_11700#0 GAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCT 660 consensus_11700#2 ------------------------------------------------------------ consensus_11700#1 ------------------------------------------------------------ consensus_11700#0 TTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTC 720 consensus_11700#2 ------------------------------------------------------------ consensus_11700#1 ------------------------------------------------------------ consensus_11700#0 GCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATC 780 consensus_11700#2 ------------------------------------------------------------ consensus_11700#1 ------------------------------------------------------------ consensus_11700#0 TTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT 832 consensus_11700#2 ---------------------------------------------------- consensus_11700#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||