cluster # 11711

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Oryza sativa
cluster # 11711 cluster # 11711 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11711#0 length = 1565 sequences # 6
consensus_11711#1 length = 862 sequences # 1

consensus_11711#2 length = 747 sequences # 1
consensus_11711#3 length = 517 sequences # 1

consensusID : consensus_11711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1565
fasta sequence

                              [GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGACGACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGTTTGGTACTATACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGGAACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAGTTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCAATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGTACTCCACTAGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCACATACCATTTTTTTTCCTGTTTTGCTCCCATTCTGTCAATTTGGACTGTAAGAGAAAACATTGCAAAATGACAGATATATCT]

[+] EMBL AK072081             [GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCACTCATTGCGGCCGACGACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGTTTGGTACTATACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGGAACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAGTTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCAATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGTACTCCACTAGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCACATACCATTTTTTTTCCTGTTTTGCTCCCATTCTGTCAATTTGGACTGTAAGAGAAAACATTGCAAAATGACAGATATATCT]
[+] EMBL AK060388             [GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGACGACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGTTTGGTACTATACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGGAACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAGTTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCAATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAA                                                                                                                                               ]
[+] EMBL CB621264             [GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGACGACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGTTTGGTACTATACTTAATGATCCTGACCTGGCACCGTTCAGGGCATCACCGGAATTCAAGGAACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAGTTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB621265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCAATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACCGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTT AAAGTGCCACTAATATATGAA                                                                                                                                                      ]
[-] EMBL CF297196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCAGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAGTATATGAATTCCCAACTTCTGACGTACTCCACTAGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCAaaaaa                                                                             ]
[+] EMBL AK058532             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGTACTCCACTAGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCACATACCATTTTTTTTCCTGTTTTGCTCCCATTCTGTCAATTTGGACTGTAAGAGAAAACATTGCAAAATGACAGATATATCT]




>consensus_11711#0
GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGAC
GACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGG
GGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCT
TCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATC
CAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGG
AAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGT
TTGGTACTATACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGG
AACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACC
TGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGG
CGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAG
TTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATA
TTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGC
AGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCA
ATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTT
CAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTGA
AACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGC
CAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTG
AGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGG
CTGATATTGTCTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAG
GTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGAT
CTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAAC
TGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATA
TGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTT
GAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGTACTCCACT
AGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCACATACCATTTTTTTTCC
TGTTTTGCTCCCATTCTGTCAATTTGGACTGTAAGAGAAAACATTGCAAAATGACAGATA
TATCT

consensusID : consensus_11711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 862
fasta sequence

                              [AGAGCTGAGAGATATCGGACCGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGGTGCCTTTTCTTTTAACTTGTAGATTTTTTACTCTCACTACATAGAACAACAACATAAATAAGTATTTAGATGTCATGGAAGAATAAAAAAAACTGACATTTTTTGAAAAGCTAGGGCACAAATGAATAAGCTTATGGTCACCTCTACAATGTTCAAAATTTGTGGTCTTCTCTGAAATACTTATCATTATTATTAAAATCTGTGTCACCCATTTCTGCTAATAGTTTTTACTGCTCTTTGATAATTTAGCATTACAATGGGCATAGTTACCTGGTAAACAACAAAATTACTTCCTCGGTTTCACTACTTGCATGCCATTATGTCAACCATTTTTTTGTGTTGTTCCACAATGCTTTGCCTCCTTTACCTTCTTAAGTAAGTATCATCCACTCACGTAGACCATATGTTTTAACTTTTGAATGGCCTTCCAAGGTATTATCCTCTGTCCACATATGCAAGGCCTGTTCTTGATTCGCTTTGTCCACAAATGTAAATATTTCATACCCCTGTGCAAAACAAGTATAATGTCCTTTATACCTCTGATAAGTATCCAACTTTCCAATATGCATGTGTTAAATATAGTAGCTAGAGAGAATAAATAGTAAAAGTCTTTTTTCAT]

[+] EMBL CB621387             [AGAGCTGAGAGATATCGGACCGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGGTGCCTTTTCTTTTAACTTGTAGATTTTTTACTCTCACTACATAGAACAACAACATAAATAAGTATTTAGATGTCATGGAAGAATAAAAAAAACTGACATTTTTTGAAAAGCTAGGGCACAAATGAATAAGCTTATGGTCACCTCTACAATGTTCAAAATTTGTGGTCTTCTCTGAAATACTTATCATTATTATTAAAATCTGTGTCACCCATTTCTGCTAATAGTTTTTACTGCTCTTTGATAATTTAGCATTACAATGGGCATAGTTACCTGGTAAACAACAAAATTACTTCCTCGGTTTCACTACTTGCATGCCATTATGTCAACCATTTTTTTGTGTTGTTCCACAATGCTTTGCCTCCTTTACCTTCTTAAGTAAGTATCATCCACTCACGTAGACCATATGTTTTAACTTTTGAATGGCCTTCCAAGGTATTATCCTCTGTCCACATATGCAAGGCCTGTTCTTGATTCGCTTTGTCCACAAATGTAAATATTTCATACCCCTGTGCAAAACAAGTATAATGTCCTTTATACCTCTGATAAGTATCCAACTTTCCAATATGCATGTGTTAAATATAGTAGCTAGAGAGAATAAATAGTAAAAGTCTTTTTTCAT]




>consensus_11711#1
AGAGCTGAGAGATATCGGACCGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATC
TTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCT
GCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAA
TCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAA
AGGTGCCTTTTCTTTTAACTTGTAGATTTTTTACTCTCACTACATAGAACAACAACATAA
ATAAGTATTTAGATGTCATGGAAGAATAAAAAAAACTGACATTTTTTGAAAAGCTAGGGC
ACAAATGAATAAGCTTATGGTCACCTCTACAATGTTCAAAATTTGTGGTCTTCTCTGAAA
TACTTATCATTATTATTAAAATCTGTGTCACCCATTTCTGCTAATAGTTTTTACTGCTCT
TTGATAATTTAGCATTACAATGGGCATAGTTACCTGGTAAACAACAAAATTACTTCCTCG
GTTTCACTACTTGCATGCCATTATGTCAACCATTTTTTTGTGTTGTTCCACAATGCTTTG
CCTCCTTTACCTTCTTAAGTAAGTATCATCCACTCACGTAGACCATATGTTTTAACTTTT
GAATGGCCTTCCAAGGTATTATCCTCTGTCCACATATGCAAGGCCTGTTCTTGATTCGCT
TTGTCCACAAATGTAAATATTTCATACCCCTGTGCAAAACAAGTATAATGTCCTTTATAC
CTCTGATAAGTATCCAACTTTCCAATATGCATGTGTTAAATATAGTAGCTAGAGAGAATA
AATAGTAAAAGTCTTTTTTCAT

consensusID : consensus_11711#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [AGAATTGTGCATTTCTATTAGCTTCACTGTATTTTTATGTTTACATTATGTAATGTCCTGGGATGACTATTCCAGGAATTGAAGTATTTGTCCTAATAGTAGTCAAGCATGCTTATAGAAGGAACTCAACAATTCAATATCCAAAAATTGTAAAGCATCAATTTGTTATGTCTAAGGTTTTGTTGACATCTACATTCTCATGGTTCAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGTAATTCTTCTCTGGATTTTAGTTGGTCACAGGAAAATTTATACTACCTCCGTACTAAAATATGAGGAATTTGGGCAAAATCCCTTATATTTTGAGACGGAGATAGTCCTTAATGATGTAATAAGTATAGTATGAAGGTCATACGTTAGAATTGAATGACACTGAATCTGAAGTTTACGCGTAAATTAATATATCTAACCAAGTGTATTTCTTTATTTGTAGGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTG]

[-] EMBL CB621386             [AGAATTGTGCATTTCTATTAGCTTCACTGTATTTTTATGTTTACATTATGTAATGTCCTGGGATGACTATTCCAGGAATTGAAGTATTTGTCCTAATAGTAGTCAAGCATGCTTATAGAAGGAACTCAACAATTCAATATCCAAAAATTGTAAAGCATCAATTTGTTATGTCTAAGGTTTTGTTGACATCTACATTCTCATGGTTCAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGTAATTCTTCTCTGGATTTTAGTTGGTCACAGGAAAATTTATACTACCTCCGTACTAAAATATGAGGAATTTGGGCAAAATCCCTTATATTTTGAGACGGAGATAGTCCTTAATGATGTAATAAGTATAGTATGAAGGTCATACGTTAGAATTGAATGACACTGAATCTGAAGTTTACGCGTAAATTAATATATCTAACCAAGTGTATTTCTTTATTTGTAGGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTG]




>consensus_11711#2
AGAATTGTGCATTTCTATTAGCTTCACTGTATTTTTATGTTTACATTATGTAATGTCCTG
GGATGACTATTCCAGGAATTGAAGTATTTGTCCTAATAGTAGTCAAGCATGCTTATAGAA
GGAACTCAACAATTCAATATCCAAAAATTGTAAAGCATCAATTTGTTATGTCTAAGGTTT
TGTTGACATCTACATTCTCATGGTTCAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTG
TCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTG
GAAGAGTAATTCTTCTCTGGATTTTAGTTGGTCACAGGAAAATTTATACTACCTCCGTAC
TAAAATATGAGGAATTTGGGCAAAATCCCTTATATTTTGAGACGGAGATAGTCCTTAATG
ATGTAATAAGTATAGTATGAAGGTCATACGTTAGAATTGAATGACACTGAATCTGAAGTT
TACGCGTAAATTAATATATCTAACCAAGTGTATTTCTTTATTTGTAGGGCATGCCAAATT
GGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTT
GATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTA
ATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGC
CACTAATATATGAATTCCCAACTTCTG

consensusID : consensus_11711#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CAGAGGCTGTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTAGCTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGACGATTTAAGGCTGATATTGTCTCTCCGTGAACATGGGAAAGTTGGATACGTGACCAGCAAGAGTGCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATAGTTGCAGGAACTTCCACGAGCTTGAAGAGACTGGCTGAGCCAACTTGAACCGTTGAGTGAAGGTGTGTATACNNACTGCAGTTTGGATCATGCCATATGTTTCTCCCTNTGTATTATTAATTCCCTGAATCTAGTGTATAGACCATACCATGGTAATTTNGAGGGAAAATTTNGTTTAGTCCCCTAATATAGTGAATTCCCGAGCTTCGGACNTANGAGGGGGGGGAGGGGGGGGGGGGGAGGG]

[+] EMBL BM039002             [CAGAGGCTGTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTAGCTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGACGATTTAAGGCTGATATTGTCTCTCCGTGAACATGGGAAAGTTGGATACGTGACCAGCAAGAGTGCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATAGTTGCAGGAACTTCCACGAGCTTGAAGAGACTGGCTGAGCCAACTTGAACCGTTGAGTGAAGGTGTGTATACNNACTGCAGTTTGGATCATGCCATATGTTTCTCCCTNTGTATTATTAATTCCCTGAATCTAGTGTATAGACCATACCATGGTAATTTNGAGGGAAAATTTNGTTTAGTCCCCTAATATAGTGAATTCCCGAGCTTCGGACNTANGAGGGGGGGGAGGGGGGGGGGGGGAGGG]




>consensus_11711#3
CAGAGGCTGTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTG
AGAAGCGTAGCTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGACGATTTAAGG
CTGATATTGTCTCTCCGTGAACATGGGAAAGTTGGATACGTGACCAGCAAGAGTGCTGAA
GGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGA
TCTGGAAGAGGCATGCCAAATTGGAACGACATAGTTGCAGGAACTTCCACGAGCTTGAAG
AGACTGGCTGAGCCAACTTGAACCGTTGAGTGAAGGTGTGTATACNNACTGCAGTTTGGA
TCATGCCATATGTTTCTCCCTNTGTATTATTAATTCCCTGAATCTAGTGTATAGACCATA
CCATGGTAATTTNGAGGGAAAATTTNGTTTAGTCCCCTAATATAGTGAATTCCCGAGCTT
CGGACNTANGAGGGGGGGGAGGGGGGGGGGGGGAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11711#0      GTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGAC 60
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      GACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGG 120
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      GGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCT 180
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      TCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATC 240
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      CAAATCCTGTTGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGG 300
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      AAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGT 360
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      TTGGTACTATACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGG 420
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      AACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACC 480
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      TGAAACTCATTAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGG 540
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      CGTTAACTGCAGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAG 600
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      ------------------------------------------------------------
                                                                                   

consensus_11711#0      TTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATA 660
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      --------------------------------AGAGCTGAGAGATATCGGACCGAACTGC 28
                                                                                   

consensus_11711#0      TTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGC 720
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      AGAATTGTGCATTTCTATTAGCTTCACTGTATTTTTATGTTTACATTATGTAATGTCCTG 60
consensus_11711#1      TGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTT---CTCAGAAAGCCCAAA 85
                                                                                   

consensus_11711#0      AGATCACACAAATTTCTCGCAATGAAACCCTTTCAAGGTTAC-CTGTCCGCCTGTCAACC 779
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      GGATGACT---ATTCCAGGAATTGAAGTATTTGTCCTAATAG-TAGTCAA---GCATGCT 113
consensus_11711#1      GTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATG 145
                                                                                   

consensus_11711#0      AATCGCATTATTGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGT 839
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      TATAGAAGGAACTCAACAATTCAATATCCAAAAATTGTAAAGC--ATCAATTTGTTATGT 171
consensus_11711#1      ACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGAT 205
                                                                                   

consensus_11711#0      TCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTG 899
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      CTAAGGTTTTGTTGACATCTACATTCTCATGGTTCAGTTGGATACGTGACC-AGCAAGAG 230
consensus_11711#1      TTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGGTGCCTTTTCTTTTAACTTGTAG 265
                                                                                   

consensus_11711#0      AAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAG 959
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      TCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGG---ATGGTCGT 287
consensus_11711#1      ATT-----TTTTACTCTCACTACATAGAACAACAACATA----AATAAGTATTTAGATGT 316
                                                                                   

consensus_11711#0      CCAAGAGGCT-TTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTT 1018
consensus_11711#3      --CAGAGGCTGTTGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTT 58
consensus_11711#2      GTCAGAAGATCTGGAAGAGTAATTCTTCTCTGGAT---TTTAGTTGGTCACAGGAAAATT 344
consensus_11711#1      CATGGAAGAATAAAAAAAACTGACATTTTTTGAAA-AGCTAGGGCACAAATGAATAAGCT 375
                           ** *       *         *    ** *     *                *  *

consensus_11711#0      TGAGAA-GCGTA--CTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGAT- 1074
consensus_11711#3      TGAGAA-GCGTAG-CTGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGA-CGAT- 114
consensus_11711#2      TATACT-ACCT---CCGTACTAAAATATGAGGAATTTGGGCAAAATCCCTTATA---TT- 396
consensus_11711#1      TATGGTCACCTCTACAATGTTCAAAATTTGTGGTCTTCTCTGAAATACTTATCATTATTA 435
                       *       * *   *       *                   ***  *     *    * 

consensus_11711#0      TTAAGGCTGATATTGTCTCTCCTGA-ACAATGGGAAAGTTGGATACGTGACCAGCAAGAG 1133
consensus_11711#3      TTAAGGCTGATATTGTCTCTCCGTG-AACATGGGAAAGTTGGATACGTGACCAGCAAGAG 173
consensus_11711#2      TTGAGACGGAGATAGTCCTTAATGATGTAATAAGTATAGTATGAAGGTCATACGTTAGAA 456
consensus_11711#1      TTAAAATCTGTGTCACCCATTTCTG-CTAATAGTTTTTACTGCTCTTTGATAATTTAGCA 494
                       ** *        *   *  *         **                * *      **  

consensus_11711#0      T-CTGAAGGTGTCACTCCCGGTGAAGATGTC--TATATAATCCTCCGATTGGATGGTCGT 1190
consensus_11711#3      TGCTGAAGGTGTCACTCCCGGTGAAGATGTC--TATATAATCCTCCGATTGGATGGTCGT 231
consensus_11711#2      T--TGAA--TGACACTGAATCTGAAGTTTACG-CGTAAATTAATATATCTAACCAAGTGT 511
consensus_11711#1      TTACAATGGGCATAGTTACCTGGTAAACAACAAAATTACTTCCTCGGTTTCACTACTTGC 554
                       *    *       * *      * *     *    *    *  *     *        * 

consensus_11711#0      GTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATA-TTGCAGGAACTTCCACG 1249
consensus_11711#3      GTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATAGTTGCAGGAACTTCCACG 291
consensus_11711#2      ATTTCTTTATTTGTAGG--GCATGCCAAATTGGAACGACATA-TTGCAGGAACTTCCACG 568
consensus_11711#1      ATGCCATTATGT-CAACCATTTTTTTGTGTTGTTCCACAATGCTTT--GCCTCCTTTACC 611
                        *      ** *  *       *      ***   *   **  **   *   * *  ** 

consensus_11711#0      A-CTTGAAGA-ACTG-CTGAGCAAACTTGAAC-GT-TGA-TGAAGGTGTGTATACAA-CT 1302
consensus_11711#3      AGCTTGAAGAGACTGGCTGAGCCAACTTGAACCGT-TGAGTGAAGGTGTGTATACNNACT 350
consensus_11711#2      A-CTTGAAGA-ACTG-CTGAGCAAACTTGAAC-GT-TGA-TGAAGGTGTGTATACAA-CT 621
consensus_11711#1      TTCTTAAGTAAGTATCATCCACTCACGTAGACCATATGTTTTAACTTTTGAATGGCCTTC 671
                         *** *  *       *   *  ** *  **  * **  * **  * ** **       

consensus_11711#0      GCAGTTTG-ATCAT-CCATATGTTTCTCCATT--GTATTATTAATTCCCT-AATCTA--- 1354
consensus_11711#3      GCAGTTTGGATCATGCCATATGTTTCTCCCTNT-GTATTATTAATTCCCTGAATCTAG-- 407
consensus_11711#2      GCAGTTTG-ATCAT-CCATATGTTTCTCCATT--GTATTATTAATTCCCT-AATCTA--- 673
consensus_11711#1      CAAGGTATTATCCT-CTGTCCACATATGCAAGGCCTGTTCTTGATTCGCTTTGTCCACAA 730
                         ** *   *** * *  *     * * *      * ** ** **** **   ** *   

consensus_11711#0      ---TGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATA 1411
consensus_11711#3      ---TGTATAGACCATACCATGGTAATTTNGAGGGAAAATTTNGTTTAGTCCCCTAATATA 464
consensus_11711#2      ---TGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATA 730
consensus_11711#1      ATGTAAATATTTCATACCCCTGTGCAAAACAAGTATAATGTCCTTTATACCTCTGATA-- 788
                          *  ***   ******   **       * * * *** *  ****  ** ** ***  

consensus_11711#0      -TGAATTCCCAA-CTTCTGACGTACTCCACTAGTTACTGTGTGACTTCTCGTTTATGTCA 1469
consensus_11711#3      GTGAATTCCCGAGCTTCGGACNTANGAGGGGGGGGAGGGGGGGGGGGGGAGGG------- 517
consensus_11711#2      -TGAATTCCCAA-CTTCTG----------------------------------------- 747
consensus_11711#1      ---AGTATCCAACTTTCCAATATGCATGTGTTAAATATAGTAGCTAGAGAGAATAAATAG 845
                          * *  ** *  ***                                           

consensus_11711#0      CTACTATCAAGCCACATACCATTTTTTTTCCTGTTTTGCTCCCATTCTGTCAATTTGGAC 1529
consensus_11711#3      ------------------------------------------------------------
consensus_11711#2      ------------------------------------------------------------
consensus_11711#1      TAAAAGTCTTTTTTCAT------------------------------------------- 862
                                                                                   

consensus_11711#0      TGTAAGAGAAAACATTGCAAAATGACAGATATATCT 1565
consensus_11711#3      ------------------------------------
consensus_11711#2      ------------------------------------
consensus_11711#1      ------------------------------------