These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence [ACCGAGGCGAGAGGGAAGAGCACATGGCGAGCGGGCGAGGAGGAGGGGGTGGGGTGGCGTCGCCGACGCCGGCGAAGGTGGAGGGCGGCGGAGGAGGAGGAGGAGGGGGGCCGGGGATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGCGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAACTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTACAACTTGACTAATGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071661 [ACCGAGGCGAGAGGGAAGAGCACATGGCGAGCGGGCGAGGAGGAGGGGGTGGGGTGGCGTCGCCGACGCCGGCGAAGGTGGAGGGCGGCGGAGGAGGAGGAGGAGGGGGGCCGGGGATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGCGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAACTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTACAACTTG ] [+] EMBL AY224437 [ GGGCGAGGAGGAGGGGGTGGGGTGGCGTCGCCGACGCCGGCGAAGGTGGAGGGCGGCGGAGGAGGAGGAGGAGGGGGGCCGGGGATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGCGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAACTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGtg ] [+] EMBL CA752634 [ GCGAGGAGGAGGCGGTGGGGTGGCGTCGCCG G CGGCGAAGGTGGAGGGCGGCG GG GGAGGAGGAGGGGGGCCGGGGATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCGCTGGGGGCGCCGCCGGGTCCCGACGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGCGGCCCCACGCCACATGGCGGCGGCAAGGGTGGCGGCGGCGAGG AGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGAGAAGT CTCCGTCGCCGACTGCTCCCGGATGATCCGATCCGTC AC CCGACGGCGACGGCTGCGTCAACTTCGAC ] [+] EMBL CA753643 [ GGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGCGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAACTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCC ] [+] EMBL AU184789 [ AGCAACGGGAAGATCTNGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAACTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAAaaa ] [+] EMBL CF310739 [ GGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTACAACTTGACTAATGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [AAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGTTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGGGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAATTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTACAACTTGACTAATGTTCAATTTAAAAGGTGTATAAACAAGCTTGGGCAAGGGATTGCCGTCCAGCCTGGGCAAGAATGTCGAGTTTTATAGCCTTGTTTGTTTAATATTTGTAACACCCAGTAAAAAAAAA] [-] EMBL CB644162 [AAGATCTCGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGGTGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGTTTCGTCGACCTCTCCGAGTTCGCCGCCTTCCACTGGGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGGACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAATTTCGACGAGTTCAAGAAGATGATGGGCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTACAACTTGACTAATGTTCAATTTAAAAGGTGTATAAACAAGCTTGG ] [+] EMBL BI812628 [ CACCGCGTGCTCC CCAGCTC GCGACAAGTGCTCCGTCGCCGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGAT GCTGCGTC ACTTCGACGAGTTCAAGAAGATGATGGGCGGC GC GCGGCC GCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCCCCTGATTTGATGGGTAGTGATGTAATCATGC AAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATACTGTAC ACTTGACTAATGTTCAA CTGATGGGTGTATAAACAAGCTTGGGCAAGGGATTGCCGTCCAGCCTGGGCAAGAATGTCGAGTTTTATAGCCTTGTTTGTTTAATATTTGTAACACCCAGTAAAAAAAAA] consensusID : consensus_11713#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [ACAGCCGACAGCCAAACGGGAAGATCTCGGCAGCCGGGAGCTCACACCAGCAGTGCTCCAGCCAGCTCAGGCGACAAGTGGCTGCACAGTCANCCGACTGGCTCACCAGGATGGATCCAGGTGCACAGTCAGACTNCCAGACAGGCAGATGGGCTGCAGTCAAACTTCGACGAGTTCAAGAAGATGATGGTCAGGCAGGCGGCAGGCCAGGCAGGTAGGCATGGAGGGGACTGACTCCAGTATGGTTGCCCAGGTCAAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTGTGATGAAATGCAAGCCTAATGATGTTAGCATGGTGAACAAACTGTGTGTTGAAGTAGATG] [+] EMBL BI805734 [ACAGCCGACAGCCAAACGGGAAGATCTCGGCAGCCGGGAGCTCACACCAGCAGTGCTCCAGCCAGCTCAGGCGACAAGTGGCTGCACAGTCANCCGACTGGCTCACCAGGATGGATCCAGGTGCACAGTCAGACTNCCAGACAGGCAGATGGGCTGCAGTCAAACTTCGACGAGTTCAAGAAGATGATGGTCAGGCAGGCGGCAGGCCAGGCAGGTAGGCATGGAGGGGACTGACTCCAGTATGGTTGCCCAGGTCAAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTGTGATGAAATGCAAGCCTAATGATGTTAGCATGGTGAACAAACTGTGTGTTGAAGTAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11713#0 ACCGAGGCGAGAGGGAAGAGCACATGGCGAGCGGGCGAGGAGGAGGGGGTGGGGTGGCGT 60 consensus_11713#1 ------------------------------------------------------------ consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 CGCCGACGCCGGCGAAGGTGGAGGGCGGCGGAGGAGGAGGAGGAGGGGGGCCGGGGATGC 120 consensus_11713#1 ------------------------------------------------------------ consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 CGATGGCGGAGCTGGAGCAGGTGTTCCGGCGGTACGACGCGAACGGCGACGGGAAGATCT 180 consensus_11713#1 -----------------------------------------------------AAGATCT 7 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 CGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGG 240 consensus_11713#1 CGGCGGAGGAGCTGGCGTCCGTGCTGCGGGCACTGGGGGCGCCCCTCGGTCCCGGCGAGG 67 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 TGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGCTTCGTCGACCTCTCCGAGT 300 consensus_11713#1 TGCGGCGCATGATGGACGAGATGGACTCCGACCGCGACGGTTTCGTCGACCTCTCCGAGT 127 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 TCGCCGCCTTCCACTGCGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGG 360 consensus_11713#1 TCGCCGCCTTCCACTGGGGCCCCACGCCGGCGCACGGCGGCAAGGGCGGCGACGCCAAGG 187 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 ACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACA 420 consensus_11713#1 ACCAGGAGGCCGCGTCGGAGGCGGAGCTGAGGGAGGCGTTCCGGATGTACGACGCCGACA 247 consensus_11713#2 --------------------------------------------------ACAGCCGACA 10 ******* consensus_11713#0 GC--AACGGGAAGATCTCGGCG--CGGGAGCTC-CACCGC--GTGCTCC-GCCAGCTC-G 471 consensus_11713#1 GC--AACGGGAAGATCTCGGCG--CGGGAGCTC-CACCGC--GTGCTCC-GCCAGCTC-G 298 consensus_11713#2 GCCAAACGGGAAGATCTCGGCAGCCGGGAGCTCACACCAGCAGTGCTCCAGCCAGCTCAG 70 ** ***************** ********* **** ******* ******** * consensus_11713#0 GCGACAAGTG----CTCCGTC-GCCGACTG---CTCCCGGATG-ATCCGGT----CCGTC 518 consensus_11713#1 GCGACAAGTG----CTCCGTC-GCCGACTG---CTCCCGGATG-ATCCGGT----CCGTC 345 consensus_11713#2 GCGACAAGTGGCTGCACAGTCANCCGACTGGCTCACCAGGATGGATCCAGGTGCACAGTC 130 ********** * * *** ******* * ** ***** **** * * *** consensus_11713#0 -GACGCC--GACGGC--GATGG-CTGC-GTCAA-CTTCGACGAGTTCAAGAAGATGATGG 570 consensus_11713#1 -GACGCC--GACGGC--GATGG-CTGC-GTCAA-TTTCGACGAGTTCAAGAAGATGATGG 397 consensus_11713#2 AGACTNCCAGACAGGCAGATGGGCTGCAGTCAAACTTCGACGAGTTCAAGAAGATGATGG 190 *** * *** * ***** **** ***** ************************* consensus_11713#0 GCGGC--GGCGGCGGCC--GGC-GGTAGGC-TGGAGGGGACTGACTCC-GTATGGTTGCC 623 consensus_11713#1 GCGGC--GGCGGCGGCC--GGC-GGTAGGC-TGGAGGGGACTGACTCC-GTATGGTTGCC 450 consensus_11713#2 TCAGGCAGGCGGCAGGCCAGGCAGGTAGGCATGGAGGGGACTGACTCCAGTATGGTTGCC 250 * * ****** * * *** ******* ***************** *********** consensus_11713#0 C-GGTCAAA-GTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCT----TATAAAT 677 consensus_11713#1 C-GGTCAAA-GTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCT----TATAAAT 504 consensus_11713#2 CAGGTCAAAAGTTTTATCTGTTCTTGCATGGTTTCCGTAATTAGAAGCTGTGATGAAATG 310 * ******* *************************************** * ** consensus_11713#0 CAAGCCTAATATT--TAGCATG-TGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCC 734 consensus_11713#1 CAAGCCTAATATT--TAGCATG-TGAACAACTTTTTAAGTAGATTTTAAAAAAGCCCCCC 561 consensus_11713#2 CAAGCCTAATGATGTTAGCATGGTGAACAAACTGTGTGTTGAAGTAGATG---------- 360 ********** * ******* ******* * * * * * * consensus_11713#0 ACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTAC 794 consensus_11713#1 ACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTAC 621 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 TGTTTCTGATATATACTGTACAACTTGACTAATGTTCAAAAAAAAAAAAAAAAAAAAAAA 854 consensus_11713#1 TGTTTCTGATATATACTGTACAACTTGACTAATGTTCAATTTAAAAGGTGTATAAACAAG 681 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 898 consensus_11713#1 CTTGGGCAAGGGATTGCCGTCCAGCCTGGGCAAGAATGTCGAGTTTTATAGCCTTGTTTG 741 consensus_11713#2 ------------------------------------------------------------ consensus_11713#0 ------------------------------- consensus_11713#1 TTTAATATTTGTAACACCCAGTAAAAAAAAA 772 consensus_11713#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||