cluster # 11720

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Oryza sativa
cluster # 11720 cluster # 11720 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11720#0 length = 563 sequences # 8

consensus_11720#1 length = 431 sequences # 1

consensusID : consensus_11720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 563
fasta sequence

                              [TTTTTTTTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA-GCAGATTTGGTTATATCA-GGC-GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA-GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC-GTCGCAGCGGCGCCCGGGGATGCATTTCA-CCTCCG-CCTCCCG-CTTCACC-TGGC-AC-AGGCACC-AGTGG--TTCTT-CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT-CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG]

[-] EMBL AK107891             [TTTTTTTTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA GCAGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CCTCACC TGGC AC AGGCACC AGTGG  TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACG                                                                   ]
[-] EMBL AU097524             [   TTTTTATCGTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTANGANGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCACCCTCCGNACTCCCGNTTTCACCTTGGCAAC A GCACCAAGTGGGTTTCTTNCACCACCCC                                                                                                                                                                                                            ]
[+] EMBL CF291887             [      TTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAACCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA GCAGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CTTCACC TGGC AC AGGCACC AGTGG  TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAAGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCAT                                      ]
[-] EMBL AU097523             [                                                                                                                                                                            AAGTTGGATATAGCGTA GCAGATTT GTTATATCAGGGCNGTGCTTG TGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACNGTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CTTCACC TGGC AC AGGCACC AGTGG  TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTC  G TCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG]
[-] EMBL OSR31431A            [                                                                                                                                                                                                                                                              ATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGNAGCGNCGCNCGGGGATGCATTTCA CCTCCG CCTCCCG CTTNACC TGGA ACAAGGCACC AGTGG  TTCTT CACCACNCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCTNGCTTCG  TCCGCNGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG]
[-] EMBL CA756555             [                                                                                                                                                                                                                                                                                                                                             ACC TGGC AC AGGCACC AGTGG  TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTAAT  ]
[-] EMBL OSR31511A            [                                                                                                                                                                                                                                                                                                                                                                     G  TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTNAGGCAGTTGGTGAAGTAGGTCGTCT CGTCGCGCAGTCCT CCATC GCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG]
[-] EMBL CF291888             [                                                                                                                                                                                                                                                                                                                                                                                   CCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTA   ]




>consensus_11720#0
TTTTTTTTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATG
AGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATA
GGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGA
TATAGCGTAGCAGATTTGGTTATATCAGGCGTGCTTGCTGCACCTGAGGTTTCTCATGCA
GGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACGTCGCAGCGGCGCCCGGGGAT
GCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCACCAGTGGTTCTTCACCACCCC
GCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGC
GCAGTCCTCCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACAC
CGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATC
AAGATTTCAGCTACAGCTTATAG

consensusID : consensus_11720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACGTCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCACCAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGT]

[-] EMBL AU173442             [TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACGTCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCACCAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGT]




>consensus_11720#1
TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAA
TAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAA
TCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGT
AGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTG
CACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACG
TCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCAC
CAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTG
AAGTAGGTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11720#0      --------TTTTTTTTTTTTT------------GAATATGAGATCCGGAGCCGACCATAA 40
consensus_11720#1      TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAA 60
                               *************            ******** ******************

consensus_11720#0      TAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAA 100
consensus_11720#1      TAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAA 120
                       ************************************************************

consensus_11720#0      TCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGT 160
consensus_11720#1      TCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGT 180
                       **** ** ****************************************************

consensus_11720#0      AGGCATCTAATTAAGTTGGATATAGCGTAGCAGATTTGGTTATATCAGGCGTGCTTGCTG 220
consensus_11720#1      AGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTG 240
                       ****** ************************* ***************************

consensus_11720#0      CACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACG 280
consensus_11720#1      CACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACG 300
                       ************************************************************

consensus_11720#0      TCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCAC 340
consensus_11720#1      TCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCAC 360
                       ************************************************************

consensus_11720#0      CAGTGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTG 400
consensus_11720#1      CAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTG 420
                       *** ********************************************************

consensus_11720#0      AAGTAGGTCGTCTGCGTCGCGCAGTCCTCCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCC 460
consensus_11720#1      AAGTAGGTCGT------------------------------------------------- 431
                       ***********                                                 

consensus_11720#0      GCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGAC 520
consensus_11720#1      ------------------------------------------------------------
                                                                                   

consensus_11720#0      TCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG 563
consensus_11720#1      -------------------------------------------