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Oryza sativa
cluster # 11729 cluster # 11729       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11729#0 length = 1915 sequences # 5  
consensus_11729#1 length = 685 sequences # 1  
consensus_11729#2 length = 641 sequences # 1  
consensus_11729#3 length = 507 sequences # 2  

consensusID : consensus_11729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1915
fasta sequence
                              [AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTTCCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTGGCCGCAGCAGCGCCTGCGCAGCGAGGGGGGTCTCCTGTGCGTGTTGCGCGGCTGTGTCTTCAGCACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTCTCGCCCTCCTGCACGGAGGAGGTATGTCCCATCAATCAGACACATCTTCAAGCTCAAATGATTCCGAAGATAGCAACATCATCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTGAGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCAAGATTGAAGCTCAGAAAGCTAGTACATCTCACCCTCGAAGTGGTGAACGGAAATATGTAAAGAGGAACCGCGAAGAGGGCCATCGACGACTCGTGGAAGATTACTTCTCTAAAGATCCAATCTACAGTGATAAACAGTTCCGTGCAAGGTACCGGATGAGAAGACCCCTTTTTCTACGTATTGTTCATGCCTTAGGTGAGTGGTCTCCCTATTTCACTAGTAGGAGAGATGCCATTAATCGTCAAGGGCTCTCACCTTTGCAAAAATGCACAATAGCCATTCGTGCATTAGCATGTGGCACCCTCGGAGACGCCATTGATGAATACGTAGATACTGGTATCAGCACAGCACTGGAGTGTTTGGATTGGTTTGTGGAAGGGGTGATTGACAATTTTGGTGAAGAATATTTGCGAAGCCCCACTAGTGAGGATATGCAACATATACTACAAATGAATGAGGCACGGGGCTTCCCTGGCATGTTAGGAAGTATTGGCTGTATGCACTGGGAGTGGAAAAATTGCCCAGTTATATGGAGGCGTCACCTTACTCATACCGATCATGGTGCGACTACAATGATTCTTGAAGCGGTTGCTTCAAATGACAGCTGGATATGGCATGCTTTCTTTGGTGCCATTGGATCGAACAATGAGATCACCATTCTCGGCCAACCACAGTTGTTCACCGAATTGTTGAAAGGCCAAGCTGCTCATGTGCAATTTTCTGTCAACAGGAGGCAATACAATACAGGCTACTATCTTGCTGATGGAATATACCCAGAAGGCAATGTCTTTGTTAAAACAGTAACCCTCCCTCAGAGCGAATAGGATCAATTGTTTGCACGGCATCAAGAAGGAGCAAGGAAGGACGTCCAGGAAGCCTTTGGACTTCTACAATCTCGTTTTGCCATTGTGCGTGGTCCCACTCGTTTCTTTCAACAAGAGACTCTTGTCAAAATTATGCAAGCTTGCATTATACTTCACAACATGACAGTTGAGGATGAGAAAGATATGGGAAGCTCTTGTTTTGACTCGGATGAAATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAACACTGTGCCTGCTGGCTGTTATGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACACATGCACAACTTAGAAGGGACTTAATGGGGCATATTTGGCAGCGTTTTGGTCCATTTGGCAACAAGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCTTTGAGGTTACTGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAGTGTCCCGCTGGATTACTTGGGATATTGGACTTCCAACATAACCAATGATGTGGTTCTATTGTTCCCTTTGTCCGACTCGCTACTATTCCAACTTGCTGGTACAAGAGCTAGCTCTGTGCTGCTATGTTCTGTTCCAACTGTGGATGTATTGGGTATTATATAACAAAGAGCATTA-GGAGTATATTACTTTTGAGTTT]

[+] EMBL AK103436             [AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTTCCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTGGCCGCAGCAGCGCCTGCGCAGCGAGGGGGGTCTCCTGTGCGTGTTGCGCGGCTGTGTCTTCAGCACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTCTCGCCCTCCTGCACGGAGGAGGTATGTCCCATCAATCAGACACATCTTCAAGCTCAAATGATTCCGAAGATAGCAACATCATCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTGAGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCAAGATTGAAGCTCAGAAAGCTAGTACATCTCACCCTCGAAGTGGTGAACGGAAATATGTAAAGAGGAACCGCGAAGAGGGCCATCGACGACTCGTGGAAGATTACTTCTCTAAAGATCCAATCTACAGTGATAAACAGTTCCGTGCAAGGTACCGGATGAGAAGACCCCTTTTTCTACGTATTGTTCATGCCTTAGGTGAGTGGTCTCCCTATTTCACTAGTAGGAGAGATGCCATTAATCGTCAAGGGCTCTCACCTTTGCAAAAATGCACAATAGCCATTCGTGCATTAGCATGTGGCACCCTCGGAGACGCCATTGATGAATACGTAGATACTGGTATCAGCACAGCACTGGAGTGTTTGGATTGGTTTGTGGAAGGGGTGATTGACAATTTTGGTGAAGAATATTTGCGAAGCCCCACTAGTGAGGATATGCAACATATACTACAAATGAATGAGGCACGGGGCTTCCCTGGCATGTTAGGAAGTATTGGCTGTATGCACTGGGAGTGGAAAAATTGCCCAGTTATATGGAGGCGTCACCTTACTCATACCGATCATGGTGCGACTACAATGATTCTTGAAGCGGTTGCTTCAAATGACAGCTGGATATGGCATGCTTTCTTTGGTGCCATTGGATCGAACAATGAGATCACCATTCTCGGCCAACCACAGTTGTTCACCGAATTGTTGAAAGGCCAAGCTGCTCATGTGCAATTTTCTGTCAACAGGAGGCAATACAATACAGGCTACTATCTTGCTGATGGAATATACCCAGAAGGCAATGTCTTTGTTAAAACAGTAACCCTCCCTCAGAGCGAATAGGATCAATTGTTTGCACGGCATCAAGAAGGAGCAAGGAAGGACGTCCAGGAAGCCTTTGGACTTCTACAATCTCGTTTTGCCATTGTGCGTGGTCCCACTCGTTTCTTTCAACAAGAGACTCTTGTCAAAATTATGCAAGCTTGCATTATACTTCACAACATGACAGTTGAGGATGAGAAAGATATGGGAAGCTCTTGTTTTGACTCGGATGAAATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAACACTGTGCCTGCTGGCTGTTATGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACACATGCACAACTTAGAAGGGACTTAATGGGGCATATTTGGCAGCGTTTTGGTCCATTTGGCAACAAGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCTTTGAGGTTACTGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAGTGTCCCGCTGGATTACTTGGGATATTGGACTTCCAACATAACCAATGATGTGGTTCTATTGTTCCCTTTGTCCGACTCGCTACTATTCCAACTTGCTGGTACAAGAGCTAGCTCTGTGCTGCTATGTTCTGTTCCAACTGTGGATGTATTGGGTATTATATAACAAAGAGCATTA GGAGTATATTACTTTTGAGTTT]
[+] EMBL CB638118             [AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTTCCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTGGCCGCAGCAGCGCCTGCGCAGCGAGGGGGGTCTCCTGTGCGTGTTGCGCGGCTGTGTCTTCAGCACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTCTCGCCCTCCTGCACGGAGGAGGTATGTCCCATCAATCAGACACATCTTCAAGCTCAAATGATTCCGAAGATAGCAACATCATCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTGAGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB638170             [AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTTCCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTGGCCGCAACAGCGCCTGCGCAGCGAGGGGGGTCTACTGTGCGTGTTGCGCGGCTGTGTCTTCAACACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTATCac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF322772             [                                                                                                                                                                                                                                                                                                                              TCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTGAGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCAAGATTGAAGCTCAGAAAGCTAGTACATCTCACCCTCGAAGTGGTGAACGGAAATATGTAAAGAGGAACCGCGAAGAGGGCCATCGACGACTCGTGGAAGATTACTTCTCTAAAGATCCAATCTACAGTGATAAACAGTTCCGTGCAAGGTACCGGATGAGAAGACCCCTTTTTCTACGTATTGTTCATGCCTTAGGTGAGTGGTCTCCCTATTTCACTAGTAGGAGAGATGCCATTAATCGTCAAGGGCTCTCACCTTTGCAAAAATGCACAATAGCCATTCGTGCATTAGCATGTGGCACCCTCGGAGACGCCATTGATGAATACGTAGATACTGGTATCAGCACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB638171             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTGTGCGTGGTCCCACTCGTTTCTTTCAACAAGAGACTCTTGTCAAAATTATGCAAGCTTGCATTATACTTCACAACATGACAGTTGAGGATGAGAAAGATATGGGAAGCTCTTGTTTTGACTCGGATGAAATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAACACTGTGCCTGCTGGCTGTTATGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACACATGCACAACTTAGAAGGGACTTAATGGAGCATATTTGGCAGCGTTTTGGTCCATTTGGCAACAAGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCTTTGAGGTTACTGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAGTGTCCCGCTGGATTACTTGGGATATTGGACTTCCAACATAACCAATGATGTGGTTCTATTGTTCCCTTTGTCCGACTCGCTACTATTCCAACTTGCTGGTACAAGAGCTAGCTCTGTGCTGCTATGTTCTGTTCCAACTGTGGATGTATTGGGTATTATATAACAAAGAGCATTAGGGAGTATATTACTTTTGA    ]


>consensus_11729#0 AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTT CCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTG GCCGCAGCAGCGCCTGCGCAGCGAGGGGGGTCTCCTGTGCGTGTTGCGCGGCTGTGTCTT CAGCACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTCTCG CCCTCCTGCACGGAGGAGGTATGTCCCATCAATCAGACACATCTTCAAGCTCAAATGATT CCGAAGATAGCAACATCATCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTG AGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCAAGATTG AAGCTCAGAAAGCTAGTACATCTCACCCTCGAAGTGGTGAACGGAAATATGTAAAGAGGA ACCGCGAAGAGGGCCATCGACGACTCGTGGAAGATTACTTCTCTAAAGATCCAATCTACA GTGATAAACAGTTCCGTGCAAGGTACCGGATGAGAAGACCCCTTTTTCTACGTATTGTTC ATGCCTTAGGTGAGTGGTCTCCCTATTTCACTAGTAGGAGAGATGCCATTAATCGTCAAG GGCTCTCACCTTTGCAAAAATGCACAATAGCCATTCGTGCATTAGCATGTGGCACCCTCG GAGACGCCATTGATGAATACGTAGATACTGGTATCAGCACAGCACTGGAGTGTTTGGATT GGTTTGTGGAAGGGGTGATTGACAATTTTGGTGAAGAATATTTGCGAAGCCCCACTAGTG AGGATATGCAACATATACTACAAATGAATGAGGCACGGGGCTTCCCTGGCATGTTAGGAA GTATTGGCTGTATGCACTGGGAGTGGAAAAATTGCCCAGTTATATGGAGGCGTCACCTTA CTCATACCGATCATGGTGCGACTACAATGATTCTTGAAGCGGTTGCTTCAAATGACAGCT GGATATGGCATGCTTTCTTTGGTGCCATTGGATCGAACAATGAGATCACCATTCTCGGCC AACCACAGTTGTTCACCGAATTGTTGAAAGGCCAAGCTGCTCATGTGCAATTTTCTGTCA ACAGGAGGCAATACAATACAGGCTACTATCTTGCTGATGGAATATACCCAGAAGGCAATG TCTTTGTTAAAACAGTAACCCTCCCTCAGAGCGAATAGGATCAATTGTTTGCACGGCATC AAGAAGGAGCAAGGAAGGACGTCCAGGAAGCCTTTGGACTTCTACAATCTCGTTTTGCCA TTGTGCGTGGTCCCACTCGTTTCTTTCAACAAGAGACTCTTGTCAAAATTATGCAAGCTT GCATTATACTTCACAACATGACAGTTGAGGATGAGAAAGATATGGGAAGCTCTTGTTTTG ACTCGGATGAAATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAACACTGTGCCTG CTGGCTGTTATGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACACATG CACAACTTAGAAGGGACTTAATGGGGCATATTTGGCAGCGTTTTGGTCCATTTGGCAACA AGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCTTTGAGGTTAC TGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAGTGTCCCGCTGGATTACTTGGGA TATTGGACTTCCAACATAACCAATGATGTGGTTCTATTGTTCCCTTTGTCCGACTCGCTA CTATTCCAACTTGCTGGTACAAGAGCTAGCTCTGTGCTGCTATGTTCTGTTCCAACTGTG GATGTATTGGGTATTATATAACAAAGAGCATTAGGAGTATATTACTTTTGAGTTT



consensusID : consensus_11729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [ACTCTGCCAGGAAGCCTTTGGGTTTTTCCAATTTCGTTTTGCCCTTGGGCGGGGTCCCCCTCGTTTTTTTTAACAAAAGATTTTTTCAAAATTATGCCAGCTTGCCTTATTCTTCTCACCCTGCCAGTTGGGGTTGAGAAAGATATGGGAAGCTCTTGTTTTGGCTCGGATGAAATCTTAGGGCCCCTGGCTGTTCTTTTTTCAGATATCAACCCTGTGCCTTATGACTGTTATCCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCCACCCATGCCCAACTTAGAAGGGGCTTAATGGAGCATTTTTGGCAGCGTTTTGGTCCCTTTGGCACCAAGTAAACCAATCCATCCTCCCGTATGGTTATGTTAAAAGCCTAAGCCCCTTTGGGGTTTCTGTAAGCCCCCCTTTTGGAAAGCCAGAATTTCCAACAGTGTCCCCCTGGATTACTTGGGATTTTGGGCTTCCCACATAACCAATGATGGGGTTTTATTGTTCCCTTTGTCCGCCTCGCTACTTTTCCAACTTGTTGGTCCCAAAGCTAGCTTTGTGGTGCTATGTTTTGTTCCCCCTGTGGATGTTTTGGGTTTTTTATACCAAAGAGCCTTAGGGGTATTTTCCTTTTGAGTTTGTGATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759261             [ACTCTGCCAGGAAGCCTTTGGGTTTTTCCAATTTCGTTTTGCCCTTGGGCGGGGTCCCCCTCGTTTTTTTTAACAAAAGATTTTTTCAAAATTATGCCAGCTTGCCTTATTCTTCTCACCCTGCCAGTTGGGGTTGAGAAAGATATGGGAAGCTCTTGTTTTGGCTCGGATGAAATCTTAGGGCCCCTGGCTGTTCTTTTTTCAGATATCAACCCTGTGCCTTATGACTGTTATCCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCCACCCATGCCCAACTTAGAAGGGGCTTAATGGAGCATTTTTGGCAGCGTTTTGGTCCCTTTGGCACCAAGTAAACCAATCCATCCTCCCGTATGGTTATGTTAAAAGCCTAAGCCCCTTTGGGGTTTCTGTAAGCCCCCCTTTTGGAAAGCCAGAATTTCCAACAGTGTCCCCCTGGATTACTTGGGATTTTGGGCTTCCCACATAACCAATGATGGGGTTTTATTGTTCCCTTTGTCCGCCTCGCTACTTTTCCAACTTGTTGGTCCCAAAGCTAGCTTTGTGGTGCTATGTTTTGTTCCCCCTGTGGATGTTTTGGGTTTTTTATACCAAAGAGCCTTAGGGGTATTTTCCTTTTGAGTTTGTGATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11729#1 ACTCTGCCAGGAAGCCTTTGGGTTTTTCCAATTTCGTTTTGCCCTTGGGCGGGGTCCCCC TCGTTTTTTTTAACAAAAGATTTTTTCAAAATTATGCCAGCTTGCCTTATTCTTCTCACC CTGCCAGTTGGGGTTGAGAAAGATATGGGAAGCTCTTGTTTTGGCTCGGATGAAATCTTA GGGCCCCTGGCTGTTCTTTTTTCAGATATCAACCCTGTGCCTTATGACTGTTATCCTGAA GTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCCACCCATGCCCAACTTAGAAGGGGC TTAATGGAGCATTTTTGGCAGCGTTTTGGTCCCTTTGGCACCAAGTAAACCAATCCATCC TCCCGTATGGTTATGTTAAAAGCCTAAGCCCCTTTGGGGTTTCTGTAAGCCCCCCTTTTG GAAAGCCAGAATTTCCAACAGTGTCCCCCTGGATTACTTGGGATTTTGGGCTTCCCACAT AACCAATGATGGGGTTTTATTGTTCCCTTTGTCCGCCTCGCTACTTTTCCAACTTGTTGG TCCCAAAGCTAGCTTTGTGGTGCTATGTTTTGTTCCCCCTGTGGATGTTTTGGGTTTTTT ATACCAAAGAGCCTTAGGGGTATTTTCCTTTTGAGTTTGTGATCCTTTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11729#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [GACACTGACATGGACTGAGGAGTAGAAATTATACTTCACAACATGACAATTGAGGATGAGAAAGATATGGCCAGCGCTTGTTTTGACCCAGATGAAATTTCAGGGACATTGGCTGTTATTTTATCAGACATCAACACTGTGCCTGCTGATTCTTTTACTGAAGTGCTACATAGAAATGCTTCTGTTTGTGCTCCACCGAAACATACACGACTTAGAAGGGACTTAATGGAGCATATTTGGCAGCGATTTGGTCCATTTGGCAACCAGTAAAACAATTAATCCTAGTGTGGAAAAGTCAGTGAAGGTCAAGGCTATCTGGCTTTAACTACCACCAAACAGCTGTCAGCATAAATTGCTACATTTTCAGAAAGACATTTTAAAGTTGCTCCCAACAAATCCTAGGTTTTCAACAGAAGTCCTCAATCTAGACTGGAAGTTGCTAATTTGTTAAAGTTAGCTCTTCGATACAGCTCCCTGCAGTGAGTTGATCATGGTCATCTTTTTTCTATATATTACCAGGGAGTGCTTAGGCAGGCTTTTCGTATGCACCTTTTGAAGTACTGTAGGCCAACAAGTTGGAATTTTTCAGCAGAATTTTATTGTGCATAACAGCAATCTCAAGCAGGAGTTCCATTGGATTA]

[+] EMBL CF318997             [GACACTGACATGGACTGAGGAGTAGAAATTATACTTCACAACATGACAATTGAGGATGAGAAAGATATGGCCAGCGCTTGTTTTGACCCAGATGAAATTTCAGGGACATTGGCTGTTATTTTATCAGACATCAACACTGTGCCTGCTGATTCTTTTACTGAAGTGCTACATAGAAATGCTTCTGTTTGTGCTCCACCGAAACATACACGACTTAGAAGGGACTTAATGGAGCATATTTGGCAGCGATTTGGTCCATTTGGCAACCAGTAAAACAATTAATCCTAGTGTGGAAAAGTCAGTGAAGGTCAAGGCTATCTGGCTTTAACTACCACCAAACAGCTGTCAGCATAAATTGCTACATTTTCAGAAAGACATTTTAAAGTTGCTCCCAACAAATCCTAGGTTTTCAACAGAAGTCCTCAATCTAGACTGGAAGTTGCTAATTTGTTAAAGTTAGCTCTTCGATACAGCTCCCTGCAGTGAGTTGATCATGGTCATCTTTTTTCTATATATTACCAGGGAGTGCTTAGGCAGGCTTTTCGTATGCACCTTTTGAAGTACTGTAGGCCAACAAGTTGGAATTTTTCAGCAGAATTTTATTGTGCATAACAGCAATCTCAAGCAGGAGTTCCATTGGATTA]


>consensus_11729#2 GACACTGACATGGACTGAGGAGTAGAAATTATACTTCACAACATGACAATTGAGGATGAG AAAGATATGGCCAGCGCTTGTTTTGACCCAGATGAAATTTCAGGGACATTGGCTGTTATT TTATCAGACATCAACACTGTGCCTGCTGATTCTTTTACTGAAGTGCTACATAGAAATGCT TCTGTTTGTGCTCCACCGAAACATACACGACTTAGAAGGGACTTAATGGAGCATATTTGG CAGCGATTTGGTCCATTTGGCAACCAGTAAAACAATTAATCCTAGTGTGGAAAAGTCAGT GAAGGTCAAGGCTATCTGGCTTTAACTACCACCAAACAGCTGTCAGCATAAATTGCTACA TTTTCAGAAAGACATTTTAAAGTTGCTCCCAACAAATCCTAGGTTTTCAACAGAAGTCCT CAATCTAGACTGGAAGTTGCTAATTTGTTAAAGTTAGCTCTTCGATACAGCTCCCTGCAG TGAGTTGATCATGGTCATCTTTTTTCTATATATTACCAGGGAGTGCTTAGGCAGGCTTTT CGTATGCACCTTTTGAAGTACTGTAGGCCAACAAGTTGGAATTTTTCAGCAGAATTTTAT TGTGCATAACAGCAATCTCAAGCAGGAGTTCCATTGGATTA



consensusID : consensus_11729#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACTGAAACTCTGCAAGGGGCATCATAATTCATAGTACCGAGTAATATGCTCCTGAAGTCCAAATGCTATTTTTACAAAATAACCAACGTATCCATAGTTGGGATTTTAAACAAAAGAAACAGTTGAAACCCATCACTTGTTATTATGTTGGAAATTTACTACCCCAGTCCCCAGGTAATCCAATGGAACTCCTGCTTGAGATTGCTGTTATGCACAATAAAATTCTGCTGAAAAATTCCAACTTGTTGGCCTACAGTACTTCAAAAGGTGCATACGAAAAGCCTGCCTAAGCACTCCCTGGTAATATATAGAAAAAAGATGACCATGATCAACTCACTGCAGGGAGCTGTATCGAAGAGCTAACTTTAACAAATTAGCAACTTCCAGTCTAGATTGAGGACACACTAGGATTAATTGTTTTACTGGTTGCCAAATGGACCAAATCGCTGCCAAATATGCTCCATTAAGTCCCTTCTA]

[+] EMBL CF318998             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACTGAAACTCTGCAAGGGGCATCATAATTCATAGTACCGAGTAATATGCTCCTGAAGTCCAAATGCTATTTTTACAAAATAACCAACGTATCCATAGTTGGGATTTTAAACAAAAGAAACAGTTGAAACCCATCACTTGTTATTATGTTGGAAATTTACTACCCCAGTCCCCAGGTAATCCAATGGAACT                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA997983             [      ccgagTTTTTTTTTTTTTTTTTTGACTGAAACTCTGCAAGTGTCATCATAATTCATAGTACCGAGTAATATGCTCCTGAAGTCCAAATGCTATTTTTACAAAATAACCAACGTATCCATAGTTGGTATCTTAGACAAAAGAAACAGTAGAAGCACATCACTAGTTATTATGTTGGAAATCTACTACCCCAGTCCCCAGGTAATCCAATGGAACTCCTGCTTGAGATTGCTGTTATGCACAATAAAATTCTGCTGAAAAATTCCAACTTGTTGGCCTACAGTACTTCAAAAGGTGCATACGAAAAGCCTGCCTAAGCACTCCCTGGTAATATATAGAAAAAAGATGACCATGATCAACTCACTGCAGGGAGCTGTATCGAAGAGCTAACTTTAACAAATTAGCAACTTCCAGTCTAGATTGAGGACACACTAGGATTAATTGTTTTACTGGTTGCCAAATGGACCAAATCGCTGCCAAATATGCTCCATTAAGTCCCTTCTA]


>consensus_11729#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACTGAAACTCTGCAAGGGGCATCATAATTC ATAGTACCGAGTAATATGCTCCTGAAGTCCAAATGCTATTTTTACAAAATAACCAACGTA TCCATAGTTGGGATTTTAAACAAAAGAAACAGTTGAAACCCATCACTTGTTATTATGTTG GAAATTTACTACCCCAGTCCCCAGGTAATCCAATGGAACTCCTGCTTGAGATTGCTGTTA TGCACAATAAAATTCTGCTGAAAAATTCCAACTTGTTGGCCTACAGTACTTCAAAAGGTG CATACGAAAAGCCTGCCTAAGCACTCCCTGGTAATATATAGAAAAAAGATGACCATGATC AACTCACTGCAGGGAGCTGTATCGAAGAGCTAACTTTAACAAATTAGCAACTTCCAGTCT AGATTGAGGACACACTAGGATTAATTGTTTTACTGGTTGCCAAATGGACCAAATCGCTGC CAAATATGCTCCATTAAGTCCCTTCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11729#0      AACGCCAAAAACCCTATCCCCATTCCCCTCGCTGCTTGACTGCGCGTTCTCAGCCGGTTT 60
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      CCCCCTTCTCTTCGTCGTCGTCACCGTCGCGCCTGCGACTCGGCGTGAACGGGGGTGGTG 120
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GCCGCAGCAGCGCCTGCGCAGCGAGGGGGGTCTCCTGTGCGTGTTGCGCGGCTGTGTCTT 180
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      CAGCACTACGGTTCCCCTTCGTCTTCGCCTGGTCGCTTTCACCGATCAATTGCTCTCTCG 240
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      CCCTCCTGCACGGAGGAGGTATGTCCCATCAATCAGACACATCTTCAAGCTCAAATGATT 300
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      CCGAAGATAGCAACATCATCCACCCAGCCAGCATATACTCTATGGAAGAATTCATTGCTG 360
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      AGCAAAGCATCGTGGACAATTTTCTTCAGCGGATCATTGTGAAGATTGAGGCCAAGATTG 420
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      AAGCTCAGAAAGCTAGTACATCTCACCCTCGAAGTGGTGAACGGAAATATGTAAAGAGGA 480
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      ACCGCGAAGAGGGCCATCGACGACTCGTGGAAGATTACTTCTCTAAAGATCCAATCTACA 540
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GTGATAAACAGTTCCGTGCAAGGTACCGGATGAGAAGACCCCTTTTTCTACGTATTGTTC 600
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      ATGCCTTAGGTGAGTGGTCTCCCTATTTCACTAGTAGGAGAGATGCCATTAATCGTCAAG 660
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GGCTCTCACCTTTGCAAAAATGCACAATAGCCATTCGTGCATTAGCATGTGGCACCCTCG 720
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GAGACGCCATTGATGAATACGTAGATACTGGTATCAGCACAGCACTGGAGTGTTTGGATT 780
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GGTTTGTGGAAGGGGTGATTGACAATTTTGGTGAAGAATATTTGCGAAGCCCCACTAGTG 840
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      AGGATATGCAACATATACTACAAATGAATGAGGCACGGGGCTTCCCTGGCATGTTAGGAA 900
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GTATTGGCTGTATGCACTGGGAGTGGAAAAATTGCCCAGTTATATGGAGGCGTCACCTTA 960
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      CTCATACCGATCATGGTGCGACTACAATGATTCTTGAAGCGGTTGCTTCAAATGACAGCT 1020
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      GGATATGGCATGCTTTCTTTGGTGCCATTGGATCGAACAATGAGATCACCATTCTCGGCC 1080
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      AACCACAGTTGTTCACCGAATTGTTGAAAGGCCAAGCTGCTCATGTGCAATTTTCTGTCA 1140
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      ACAGGAGGCAATACAATACAGGCTACTATCTTGCTGATGGAATATACCCAGAAGGCAATG 1200
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      TCTTTGTTAAAACAGTAACCCTCCCTCAGAGCGAATAGGATCAATTGTTTGCACGGCATC 1260
consensus_11729#1      ------------------------------------------------------------
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      AAGAAGGAGCAAGGAAGGACGTCCAGGAAGCCTTTGGACTTCTACAATCTCGTTTTGCCA 1320
consensus_11729#1      ----------------ACTCTGCCAGGAAGCCTTTGGGTTTTTCCAATTTCGTTTTGCCC 44
consensus_11729#2      ------------------------------------------------------------
consensus_11729#3      ----------------------------------------TTTTTTTTTTTTTTTTTTTT 20
                                                                                   

consensus_11729#0      TTGTGCGTGGTCCCACTCGTTTCTTTCAACAAGAGACTCTTGTCAAAATTATGCAAGCTT 1380
consensus_11729#1      TTGGGCGGGGTCCCCCTCGTTTTTTTTAACAAAAGATTTTT-TCAAAATTATGCCAGCTT 103
consensus_11729#2      ----------------------------------GACACTGACATGGACTGAG-GAGTAG 25
consensus_11729#3      TTTTTTTTGGACTGAAACTCTGCAAGGGGCATCATAATTCA--TAGTACCGAGTAATATG 78
                                                          *           *    *  *    

consensus_11729#0      GCATTATACTTCACAACATGACAGTTGAGGATGAGAAAGATATGGGAAGCTCTTGTTTTG 1440
consensus_11729#1      GCCTTATTCTTCTCACCCTGCCAGTTGGGGTTGAGAAAGATATGGGAAGCTCTTGTTTTG 163
consensus_11729#2      AAATTATACTTCACAACATGACAATTGAGGATGAGAAAGATATGGCCAGCGCTTGTTTTG 85
consensus_11729#3      CTCCTGAAGTCCAAATGCTATTTTTACAAAATAACCAACGTATCCATAGTTGGGATTTTA 138
                           *    * *  *   *     *      * *  **  ***    **      **** 

consensus_11729#0      ACTCGGATGAA-ATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAAC--ACTGTGC 1497
consensus_11729#1      GCTCGGATGAA-ATCTTAGGGCCCCTGGCTGTTCTTTTTTCAGATATCAAC--CCTGTGC 220
consensus_11729#2      ACCCAGATGAA-ATTTCAGGGACATTGGCTGTTATTTTATCAGACATCAAC--ACTGTGC 142
consensus_11729#3      AACAAAAGAAACAGTTGAAACCCATCACTTGTTATTATGTTGGAAATTTACTACCCCAGT 198
                             *  ** *  * *    *      **** ** * *  ** **  **   *   * 

consensus_11729#0      CTGCTGGCTGTTATGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACAC 1557
consensus_11729#1      CTTATGACTGTTATCCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCCACCC 280
consensus_11729#2      CTGCTGATTCTTTTACTGAAGTGCTACATAGAAATGCTTCTGTTTGTGCTCCACCGAAAC 202
consensus_11729#3      CCCCAGGTAATCCAATGGAACTCCTGCTTGAGATTGCTG----TTATGCACAATAAAATT 254
                       *    *    *      *** *  * *     * ****     ** *** * *   *   

consensus_11729#0      ATGCACAACTTAGAAGGGACTTAATGGGGCATATTTGGCAGCGTTTTGGTCCATTTGGCA 1617
consensus_11729#1      ATGCCCAACTTAGAAGGGGCTTAATGGAGCATTTTTGGCAGCGTTTTGGTCCCTTTGGCA 340
consensus_11729#2      ATACACGACTTAGAAGGGACTTAATGGAGCATATTTGGCAGCGATTTGGTCCATTTGGCA 262
consensus_11729#3      CTGCTGAA--AAATTCCAACTTGTTGGCCTACAGTACTTCAAAA---GGTGCAT---ACG 306
                        * *   *   *       ***  ***   *   *            *** * *    * 

consensus_11729#0      ACAAGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCTTTGAGGT 1677
consensus_11729#1      CCAAGTAAACCAATCCATCCTCCCGTATGGTTATGTTAAAAGCCTAAGCCCCTTTGGGGT 400
consensus_11729#2      ACCAGTAAAACAATTAATCCTAGTGTGGAAAAGTCAGTGAAGGTCAAGGCTATCTGGCTT 322
consensus_11729#3      AAAAGCCTGCCTAAGCACTCCCTGGTA-ATATATAGAAAAAAGATGACCATGATCAACTC 365
                          **     * *   *  *    **       *     **     *             

consensus_11729#0      TA--------CTGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAG---TGTCCCGC 1726
consensus_11729#1      TT--------CTGTAAGCCCCCCTTTTGGAAAGCCAGAATTTCCAACAG---TGTCCCCC 449
consensus_11729#2      TAACTACCACCAAACAGCTGTCAGCATAAATTGCTACATTTTCAGAAAGACATTTTAAAG 382
consensus_11729#3      A---------CTGCAGGGAGCTGTATCGAAGAGCTA--ACTTTAACAAA----------- 403
                                 *     *            *  ** *     *     *            

consensus_11729#0      TGGATTACTTGGGATATTGGACTTCCAACATAA-CCAATGATGTGGTTCTATTGTTCCC- 1784
consensus_11729#1      TGGATTACTTGGGATTTTGGGCTTCCCACATAA-CCAATGATGGGGTTTTATTGTTCCC- 507
consensus_11729#2      TTGCTCCCAACAAATCCTAGGTTTTCAACAGAAGTCCTCAATCTAGACTGGAAGTTGCTA 442
consensus_11729#3      TTAGCAACTTCCAGT-CTAGATTGAGGACACACTAGGATTAATTGTTTTACTGGTTGCCA 462
                       *      *      *  * *  *    *** *        *            *** *  

consensus_11729#0      -TTTGTCCGACTCGCTACTAT--TCCAACTTGCTGGTACAAGAGCTAGCTCTGTGCTGCT 1841
consensus_11729#1      -TTTGTCCGCCTCGCTACTTT--TCCAACTTGTTGGTCCCAAAGCTAGCTTTGTGGTGCT 564
consensus_11729#2      ATTTGTTAAAGTTAGCTCTTCGATACAGCTCCCTG--CAGTGAGTTGATCATGGTCATCT 500
consensus_11729#3      AATGGACCAAATCGCTGCCA------AATATGCTC--CATTAAGTCCCTTCTA------- 507
                         * *      *     *        *      *        **       *        

consensus_11729#0      ATGTTCTGTTC--CAACTGTGGATGTATTGGGTATTATATAACAAAGAGCATTAGGAGTA 1899
consensus_11729#1      ATGTTTTGTTC--CCCCTGTGGATGTTTTGGGTTTTTTATACCAAAGAGCCTTAGGGGTA 622
consensus_11729#2      TTTTTCTATATATTACCAGGGAGTGCTTAGGCAGGCTTTTCGTATGCACCTTTTGAAGTA 560
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      TATTACTTTTG-AGTTT------------------------------------------- 1915
consensus_11729#1      TTTTCCTTTTG-AGTTTGTGATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 681
consensus_11729#2      CTGTAGGCCAACAAGTTGGAATTTTTCAGCAGAATTTTATTGTGCATAACAGCAATCTCA 620
consensus_11729#3      ------------------------------------------------------------
                                                                                   

consensus_11729#0      ---------------------
consensus_11729#1      AAAA----------------- 685
consensus_11729#2      AGCAGGAGTTCCATTGGATTA 641
consensus_11729#3      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)