cluster # 11732

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Oryza sativa
cluster # 11732 cluster # 11732 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11732#0 length = 2682 sequences # 7

consensus_11732#1 length = 574 sequences # 1
consensus_11732#2 length = 441 sequences # 1

consensusID : consensus_11732#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2682
fasta sequence

                              [AAAAGTCTCCGCCACTTCACCCCGATCGCCGCCGCCGCCGCCGCCGCTCGATTCCCCGATGGCCGCGGAGCCGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGGCGAGAAGACAGGCGCCTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCACGTGTGGATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCAGCGCCGCGCGGACTGCAAGGACACGTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCTCTCCTCCGCGCAGCGGGAGC-TCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTTCGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAATGGCACATACACCAACAATGAGTACAATGATGTTTATCTTGTGACTACTTTAACTCCAATTCCACTTGAGGCATTCACTCTCCAAGAAAGTGAAGTATCTGCGGTTAGGTATATGCATCTTGACGAGTACAAGAGCTGCCTTGCAAGAGAAAGCGGAGAATATGTGCCTTACGATGTGAATGGGACATATGGCCAACTATTTAGTATTATTGAAGAAAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGTTTGGAATAGCAACTGCACGCTGAGAGACTGGCTGAAAGCACGTGCTAACTACTCTTCTTTTGTTAAGTTGAAGTGGTTGTATTATTCCATTAATAAGAGTCCATGGTCCTGCCTTGATGAAAATAAGGCTTTTCTATCGACTGCAGATTCTGCTGTGAAATTACTCACAGATGCCACCAAATCAGTTTCAGGATGGAAGGGGATTGAGTATCGTGCTGCGTTTCCTCGAGATAATCCTCCCGGGGCAAACTTTTATCCTCCTGATATGGACAAAATGGAGTTTGAATTATGGAAAAATGGACTGCCTGAAAAGGAGCAAAAATATGCAACTGGATTTTTTACTGTCATAAAACGGCATGATGCCTTGTTGCCTTCAATACTAGCGCAGTCAGATGGATCAAATCAAACCAAGACATCAGATGATCTTTTCGTTGTTCCATACTCTGAGGAGTACAAATCATCCCTTGAGAAAGCTGCTGAGCTTCTTCATAAAGCATCTGAATGTTCTGATTCTCCAAGCCTCAAGAATTTGCTCAAAACCAAGGCAAATGCTTTCCTTTCAAATGATTACTATGAATCTGATATAGCTTGGATGGAGCTGGACTCCAACTTGGATGTCACTATTGGCCCATACGAGACATATGAAGATGGTCTTTTTAGTTATAAGGCAACCTTTGAAGCATTTGTTGGTGTACGGGATGACATTGCCACTTCTCAAGTTAAACTCTTCGGTGATCAACTCCGGGATTTAGAGAAGCATCTTCCACTGGACAACATTTACAAATCCGACAATGTATCTGCTGCTCCAATTCGCGTTATCAATCTTCTGTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCAATGATGAGCGGATTGTGAATGAACGAGGGACCTCGATGGTTATGCTTAAGAACATTTCAGAAGCTAAGTTTAAGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTATGTTGATTTTGAGCCTTATTATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGGTCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGAATTTCATTCAGCATTGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATTTTCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCTGGCTGGATGCTTCCGATCGATCCGCTTTGGACTAGAAGAAGCTCATGGAAAAGGGCAAGCTTTGCA-GTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATTCTGATGGAAAATTCTCAGTTGATTTCACAAAGGTT-GAGGACGCTGTCGAGAGTCTCAGTAGAGAGATCCTGACAATACAAGCAAAGGGCGATAAGCC-T-GCT-GCCCAGTC-TCTTCTGCAGTCCCATGCAAGCTTGACGCA-ACCACTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGCCTGTTGATATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCA-GTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTCTATGGTGCATGAGATGACCGGGGAAATCACGTGAAACTACACTGGATAGCAGTAATACACTGAT]

[+] EMBL AK072317             [AAAAGTCTCCGCCACTTCACCCCGATCGCCGCCGCCGCCGCCGCCGCTCGATTCCCCGATGGCCGCGGAGCCGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGGCGAGAAGACAGGCGCCTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCGCGTGTGGATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCAGCGCCGCGCGGACTGCAAGGACACGTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCTCTCCTCCGCGCAGCGGGAGC TCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTTCGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAATGGCACATACACCAACAATGAGTACAATGATGTTTATCTTGTGACTACTTTAACTCCAATTCCACTTGAGGCATTCACTCTCCAAGAAAGTGAAGTATCTGCGGTTAGGTATATGCATCTTGACGAGTACAAGAGCTGCCTTGCAAGAGAAAGCGGAGAATATGTGCCTTACGATGTGAATGGGACATATGGCCAACTATTTAGTATTATTGAAGAAAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGTTTGGAATAGCAACTGCACGCTGAGAGACTGGCTGAAAGCACGTGCTAACTACTCTTCTTTTGTTAAGTTGAAGTGGTTGTATTATTCCATTAATAAGAGTCCATGGTCCTGCCTTGATGAAAATAAGGCTTTTCTATCGACTGCAGATTCTGCTGTGAAATTACTCACAGATGCCACCAAATCAGTTTCAGGATGGAAGGGGATTGAGTATCGTGCTGCGTTTCCTCGAGATAATCCTCCCGGGGCAAACTTTTATCCTCCTGATATGGACAAAATGGAGTTTGAATTATGGAAAAATGGACTGCCTGAAAAGGAGCAAAAATATGCAACTGGATTTTTTACTGTCATAAAACGGCATGATGCCTTGTTGCCTTCAATACTAGCGCAGTCAGATGGATCAAATCAAACCAAGACATCAGATGATCTTTTCGTTGTTCCATACTCTGAGGAGTACAAATCATCCCTTGAGAAAGCTGCTGAGCTTCTTCATAAAGCATCTGAATGTTCTGATTCTCCAAGCCTCAAGAATTTGCTCAAAACCAAGGCAAATGCTTTCCTTTCAAATGATTACTATGAATCTGATATAGCTTGGATGGAGCTGGACTCCAACTTGGATGTCACTATTGGCCCATACGAGACATATGAAGATGGTCTTTTTAGTTATAAGGCAACCTTTGAAGCATTTGTTGGTGTACGGGATGACATTGCCACTTCTCAAGTTAAACTCTTCGGTGATCAACTCCGGGATTTAGAGAAGCATCTTCCACTGGACAACATTTACAAATCCGACAATGTATCTGCTGCTCCAATTCGCGTTATCAATCTTCTGTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCAATGATGAGCGGATTGTGAATGAACGAGGGACCTCGATGGTTATGCTTAAGAACATTTCAGAAGCTAAGTTTAGGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTATGTTGATTTTGAGCCTTATTATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGGTCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGAATTTCATTCAGCATTGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATTTTCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCTGGCTGGATGCTTCCGATCGATCCGCTTTGGACTAGAAGAAGCTCATGGAAAAGGGCAAGCTTTGCA GTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATTCTGATGGAAAATTCTCAGTTGATTTCACAAAGGTT GAGGACGCTGTCGAGAGTCTCAGTAGAGAGATCCTGACAATACAAGCAAAGGGCGATAAGCC T GCT GCCCAGTC TCTTCTGCAGTCCCATGCAAGCTTGACGCA ACCACTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGCCTGTTGATATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCA GTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTCTATGGTGCATGAGATGACCGGGGAAATCACGTGAAACTACACTGGATAGCAGTAATACACTGAT]
[+] EMBL OSS3588A             [           CCACTTCACCCCGATCGCCGCCGCCGCCGCCGCCGCTCGATTCCCCGATGGCCGCGGAG CGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGG GAGAAGACAGGCGCCTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCACGTGTGGATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCA NGCCGCGCGGACTGCAAGGACACGTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCTCTCCTCCGCGCAG GAG GCTTCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTTCGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF325554             [                                                                  GGAGCCGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGGCGAGAAGACAGGCGCCTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCACGTGTGGATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCAGCGCCGCGCGGACTGCAAGGACACGTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCTCTCCTCCGCGCAGCGGGAGC TCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTTCGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAATGGCACATACACCAACAATGAGTACAATGATGTTTATCTTGTGACTACTTTAACTCCAATTCCACTTGAGGCATTCACTCTCCAAGAAAGTGAAGTATCTGCGGTTAGGTATATGCATCTTGACGAGTACAAGAGCTGCCTTGCAAAAGAAAGCGGAGAATATGTGCCTTACGATGTGAATGGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF322813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCAAGTTAAACTCTTCGGTGATCAACTCCGGGATTTAGAGAAGCATCTTCCACTGGACAACATTTACAAATCCGACAATGTATCTGCTGCTCCAATTCGCGTTATCAATCTTCTGTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCAATGATGAGCGGATTGTGAATGAACGAGGGACCTCGATGGTTATGCTTAAGAACATTTCAGAAGCTAAGTTTAAGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTATGTTGATTTTGAGCCTTATTATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGGTCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGAATTTCATTCAGCATTGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATTTTCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCTGGCTGGATGCTTCCGATCGATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU032314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCGATGATGAGCGGATTGTGAATNAACGAGGGACCTCGATGGTTATGCTTNAGAACATTTCAGAAGCNAAGTNTAAGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTATGTTGATTTTGAGCCTGATTATACACATATTGTTTGCCATGAATGCTGCNATGGAATTGGTCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCCACAGTNAGAATGGAACTTCAAGAATTTCATTCAGCATTGGAGGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA753487             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTATGTTGATTTTGAGCCTTATAATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGGTCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGAATTTCATTCAGCATAGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATCTTCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCTGGCTGGATGCTTCCGATCGATCCGCTTTGGACTAGAAGAAGCTCATGGAAAAGGGCAAGCTTTGCA GTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATCCTGATGGAAAATTCTCAGTTGATTTCACAAAGGTG GAGGACGCTGTCGAGAGTCTCAGTAGAGAGATCCTGACAATACCAGCAAAGGGCGATAAGCCAT GCTGGCCCAGTCTTCTTCTGCAa                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU032315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAGGGCAAGCTTTGCACGTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATTCTGATGGAAAATTCTCAGTTGATTTCACAAAGGTTNGAGGCNGCTGTCGAGNGTCTCAGTAGAGAGATCCTGACAATACANGCAAAGGGCGATAAGCC TGGCT GCCCAGTC TCTTCTGCANTCCCATGCAAGCTTGACGCACACC CTGCGTNTGGCGCTGGACAAAATAGAACACATGCAGGTGCCTGTTGATATCACTCCTATATTTGGCACAGCAAATAAGCTGCTTGCAAACGATCANGTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCATACTGCTGTTGTTCTAaaaaaaaa                                                      ]




>consensus_11732#0
AAAAGTCTCCGCCACTTCACCCCGATCGCCGCCGCCGCCGCCGCCGCTCGATTCCCCGAT
GGCCGCGGAGCCGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGGCGAGAAGACAGGCGC
CTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCACGTGTG
GATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCAGCGCCGCGCGGACTGCAAGGACAC
GTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCT
CTCCTCCGCGCAGCGGGAGCTCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTT
CGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAATGGCACATACACCAACAA
TGAGTACAATGATGTTTATCTTGTGACTACTTTAACTCCAATTCCACTTGAGGCATTCAC
TCTCCAAGAAAGTGAAGTATCTGCGGTTAGGTATATGCATCTTGACGAGTACAAGAGCTG
CCTTGCAAGAGAAAGCGGAGAATATGTGCCTTACGATGTGAATGGGACATATGGCCAACT
ATTTAGTATTATTGAAGAAAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCA
AAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGA
AGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTT
TTATGAGCAGGTTTGGAATAGCAACTGCACGCTGAGAGACTGGCTGAAAGCACGTGCTAA
CTACTCTTCTTTTGTTAAGTTGAAGTGGTTGTATTATTCCATTAATAAGAGTCCATGGTC
CTGCCTTGATGAAAATAAGGCTTTTCTATCGACTGCAGATTCTGCTGTGAAATTACTCAC
AGATGCCACCAAATCAGTTTCAGGATGGAAGGGGATTGAGTATCGTGCTGCGTTTCCTCG
AGATAATCCTCCCGGGGCAAACTTTTATCCTCCTGATATGGACAAAATGGAGTTTGAATT
ATGGAAAAATGGACTGCCTGAAAAGGAGCAAAAATATGCAACTGGATTTTTTACTGTCAT
AAAACGGCATGATGCCTTGTTGCCTTCAATACTAGCGCAGTCAGATGGATCAAATCAAAC
CAAGACATCAGATGATCTTTTCGTTGTTCCATACTCTGAGGAGTACAAATCATCCCTTGA
GAAAGCTGCTGAGCTTCTTCATAAAGCATCTGAATGTTCTGATTCTCCAAGCCTCAAGAA
TTTGCTCAAAACCAAGGCAAATGCTTTCCTTTCAAATGATTACTATGAATCTGATATAGC
TTGGATGGAGCTGGACTCCAACTTGGATGTCACTATTGGCCCATACGAGACATATGAAGA
TGGTCTTTTTAGTTATAAGGCAACCTTTGAAGCATTTGTTGGTGTACGGGATGACATTGC
CACTTCTCAAGTTAAACTCTTCGGTGATCAACTCCGGGATTTAGAGAAGCATCTTCCACT
GGACAACATTTACAAATCCGACAATGTATCTGCTGCTCCAATTCGCGTTATCAATCTTCT
GTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCAATGATGA
GCGGATTGTGAATGAACGAGGGACCTCGATGGTTATGCTTAAGAACATTTCAGAAGCTAA
GTTTAAGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTA
TGTTGATTTTGAGCCTTATTATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGG
TCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGA
ATTTCATTCAGCATTGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATTT
TCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCT
GGCTGGATGCTTCCGATCGATCCGCTTTGGACTAGAAGAAGCTCATGGAAAAGGGCAAGC
TTTGCAGTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATTCTGATGGAAAATT
CTCAGTTGATTTCACAAAGGTTGAGGACGCTGTCGAGAGTCTCAGTAGAGAGATCCTGAC
AATACAAGCAAAGGGCGATAAGCCTGCTGCCCAGTCTCTTCTGCAGTCCCATGCAAGCTT
GACGCAACCACTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGCCTGTTGATAT
CACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCAGTAGGGTGCTCGGTT
TAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGA
TACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAA
ACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCT
TGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTCTATGGTGCATGAGATGACCGGG
GAAATCACGTGAAACTACACTGGATAGCAGTAATACACTGAT

consensusID : consensus_11732#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [AGTTTAAAGTTGAAAAAAAGGATGTGGTGTCATTGAGCAAGTCATTCGATGGGTAAGTCTCTAAACAAAAACTTAGCATTTGGTGAATCAGGGACTTTTACTGTATGTTTTGAGCAGCATCTGCTCCTGTTAACAACCCACCAGAATTAGAACTTTCAAATAACTGTTTCTTTGTCTTCATCTCTTGCCAGTTACCACTTTGAAGCAATTCAACATATCATTCCCTTGGCAATCCCTGTTGCACCACGTTTTTTGTCAAAATTATCTTGCTTCAACCTTTCATGCCATGTTTATAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGTTTGGAATAGCAACTGCACGTTGTGAGGGGGGCTGAAAACATCGTGCTAACTACTCTTCTTTTGATAAGTTGAAGTGGTTAAATTATTCCATTTTTAAAAGGCCATGA]

[-] EMBL CB660477             [AGTTTAAAGTTGAAAAAAAGGATGTGGTGTCATTGAGCAAGTCATTCGATGGGTAAGTCTCTAAACAAAAACTTAGCATTTGGTGAATCAGGGACTTTTACTGTATGTTTTGAGCAGCATCTGCTCCTGTTAACAACCCACCAGAATTAGAACTTTCAAATAACTGTTTCTTTGTCTTCATCTCTTGCCAGTTACCACTTTGAAGCAATTCAACATATCATTCCCTTGGCAATCCCTGTTGCACCACGTTTTTTGTCAAAATTATCTTGCTTCAACCTTTCATGCCATGTTTATAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGTTTGGAATAGCAACTGCACGTTGTGAGGGGGGCTGAAAACATCGTGCTAACTACTCTTCTTTTGATAAGTTGAAGTGGTTAAATTATTCCATTTTTAAAAGGCCATGA]




>consensus_11732#1
AGTTTAAAGTTGAAAAAAAGGATGTGGTGTCATTGAGCAAGTCATTCGATGGGTAAGTCT
CTAAACAAAAACTTAGCATTTGGTGAATCAGGGACTTTTACTGTATGTTTTGAGCAGCAT
CTGCTCCTGTTAACAACCCACCAGAATTAGAACTTTCAAATAACTGTTTCTTTGTCTTCA
TCTCTTGCCAGTTACCACTTTGAAGCAATTCAACATATCATTCCCTTGGCAATCCCTGTT
GCACCACGTTTTTTGTCAAAATTATCTTGCTTCAACCTTTCATGCCATGTTTATAGGTAC
AAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAACCGTTATGCTCCC
ATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGAAGCCTTGGGATAT
ATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGTTTGGAATAGCAAC
TGCACGTTGTGAGGGGGGCTGAAAACATCGTGCTAACTACTCTTCTTTTGATAAGTTGAA
GTGGTTAAATTATTCCATTTTTAAAAGGCCATGA

consensusID : consensus_11732#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [ACGANGATCTGCGCAATTNTGCAAGCATAATGGGCGATNAAGCCTGTGCCCAGTANTCTCCTGCAGTCCCCATGCNAAGGCTTGACGCANACCCTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGACCTGTTGATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCAGTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTCTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101974             [ACGANGATCTGCGCAATTNTGCAAGCATAATGGGCGATNAAGCCTGTGCCCAGTANTCTCCTGCAGTCCCCATGCNAAGGCTTGACGCANACCCTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGACCTGTTGATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCAGTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTCTAAAAAAAAAAAAAAAAAAAA]




>consensus_11732#2
ACGANGATCTGCGCAATTNTGCAAGCATAATGGGCGATNAAGCCTGTGCCCAGTANTCTC
CTGCAGTCCCCATGCNAAGGCTTGACGCANACCCTGCGTGTGGCGCTGGACAAAATAGAA
CACATGCAGGTGACCTGTTGATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAA
ACGATCAGTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAA
CGTATTTTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAA
TAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGT
CTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCAGACTGCTGTTGTTC
TAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11732#0      AAAAGTCTCCGCCACTTCACCCCGATCGCCGCCGCCGCCGCCGCCGCTCGATTCCCCGAT 60
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GGCCGCGGAGCCGGAGGAGCGCCTCGACGTCCTCACCGCCGGCGGCGAGAAGACAGGCGC 120
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CTCCAAGGCCAGGTCGGAGGTGCACAGGGACGGCGACTACCACCGGGCGGTGCACGTGTG 180
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GATCTACAGCGAGAGCACCGGGGAGCTGCTGCTGCAGCGCCGCGCGGACTGCAAGGACAC 240
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GTGGCCCGGCCAGTGGGACATCTCCAGCGCCGGCCACATCTCCGCCGGCGACTCCTCTCT 300
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CTCCTCCGCGCAGCGGGAGCTCGATGAAGAACTAGGCATCAAACTTCCATCTGATGCTTT 360
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CGAGCTGTTATTTGTTTTTCTTCAGGAATGTGTTATCAACAATGGCACATACACCAACAA 420
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TGAGTACAATGATGTTTATCTTGTGACTACTTTAACTCCAATTCCACTTGAGGCATTCAC 480
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TCTCCAAGAAAGTGAAGTATCTGCGGTTAGGTATATGCATCTTGACGAGTACAAGAGCTG 540
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CCTTGCAAGAGAAAGCGGAGAATATGTGCCTTACGATGTGAATGGGACATATGGCCAACT 600
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      ATTTAGTATTATTGAAGAAAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCA 660
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      AAAGCAAATCAACCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGA 720
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      AGGAGACAGGGAAGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTT 780
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TTATGAGCAGGTTTGGAATAGCAACTGCACGCTGAGAGACTGGCTGAAAGCACGTGCTAA 840
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CTACTCTTCTTTTGTTAAGTTGAAGTGGTTGTATTATTCCATTAATAAGAGTCCATGGTC 900
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CTGCCTTGATGAAAATAAGGCTTTTCTATCGACTGCAGATTCTGCTGTGAAATTACTCAC 960
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      AGATGCCACCAAATCAGTTTCAGGATGGAAGGGGATTGAGTATCGTGCTGCGTTTCCTCG 1020
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      AGATAATCCTCCCGGGGCAAACTTTTATCCTCCTGATATGGACAAAATGGAGTTTGAATT 1080
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      ATGGAAAAATGGACTGCCTGAAAAGGAGCAAAAATATGCAACTGGATTTTTTACTGTCAT 1140
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      AAAACGGCATGATGCCTTGTTGCCTTCAATACTAGCGCAGTCAGATGGATCAAATCAAAC 1200
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CAAGACATCAGATGATCTTTTCGTTGTTCCATACTCTGAGGAGTACAAATCATCCCTTGA 1260
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GAAAGCTGCTGAGCTTCTTCATAAAGCATCTGAATGTTCTGATTCTCCAAGCCTCAAGAA 1320
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TTTGCTCAAAACCAAGGCAAATGCTTTCCTTTCAAATGATTACTATGAATCTGATATAGC 1380
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TTGGATGGAGCTGGACTCCAACTTGGATGTCACTATTGGCCCATACGAGACATATGAAGA 1440
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TGGTCTTTTTAGTTATAAGGCAACCTTTGAAGCATTTGTTGGTGTACGGGATGACATTGC 1500
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      CACTTCTCAAGTTAAACTCTTCGGTGATCAACTCCGGGATTTAGAGAAGCATCTTCCACT 1560
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GGACAACATTTACAAATCCGACAATGTATCTGCTGCTCCAATTCGCGTTATCAATCTTCT 1620
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GTACAACTCTGGGGATGTGAAAGGCCCACAAACTATTGCTTTTAATTTGCCCAATGATGA 1680
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GCGGATTGTGAATGAACGAGGGACCTCGATGGTTATGCTTAAGAACATTTCAGAAGCTAA 1740
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GTTTAAGCATATCTTAAAGCCTATAGCTAATGCTTGCATCAGAGAGGAACAGGAAGATTA 1800
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TGTTGATTTTGAGCCTTATTATACACATATTGTTTGCCATGAATGCTGCCATGGAATTGG 1860
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TCCTCATTCCATAACCCTTCCAACTGGTAAAAGATCAACAGTTAGAATGGAACTTCAAGA 1920
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      ATTTCATTCAGCATTGGAGGAGGCCAAAGCTGATATAGTTGGTCTATGGGCACTGAATTT 1980
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TCTTATTAAAAAGGGTTTACTTCCTAAGAGCCTATCAGAATCCATGTATGTCTCATTCCT 2040
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      GGCTGGATGCTTCCGATCGATCCGCTTTGGACTAGAAGAAGCTCATGGAAAAGGGCAAGC 2100
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      ------------------------------------------------------------
                                                                                   

consensus_11732#0      TTTGCAGTTTAACTGGTTGTATGAGAAAGGGGCTTTTGTCTTGCATTCTGATGGAAAATT 2160
consensus_11732#2      ------------------------------------------------------------
consensus_11732#1      -----AGTTTAAAGTTGAAAAAAAGGATGTGGTGTCATTGAGCAAGTCATTCGATGGGTA 55
                                                                                   

consensus_11732#0      CTCAGTTGATTTCACAAAGGTTGAGGACGCTGTCGAGAGTCTCAGTAGAGAGATCCTGAC 2220
consensus_11732#2      --------------------------------ACGANGATCT-----GCGCAATTNTGCA 23
consensus_11732#1      AGTCTCTAAACAAAAACTTAGCATTTGGTGAATCAGGGACTTTTACTGTATGTTTTGAGC 115
                                                        *       *     *     *      

consensus_11732#0      AATACAAGCAAAGGGCGATAAGCC-TGCTGCCCAGT-CTCTTCTGCA---GTCCC-ATGC 2274
consensus_11732#2      AGCATA----ATGGGCGATNAAGC-CTGTGCCCAGTANTCTCCTGCA---GTCCCCATGC 75
consensus_11732#1      AGCATCTGCTCCTGTTAACAACCCACCAGAATTAGAACTTTCAAATAACTGTTTCTTTGT 175
                       *  *         *   *  *  *         **   * *     *   **  *  ** 

consensus_11732#0      AA--GCTTGACGCAACCACTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTG--C 2330
consensus_11732#2      NAAGGCTTGACGCANACCCTGCGTGTGGCGCTGGACAAAATAGAACACATGCAGGTGA-C 134
consensus_11732#1      CTTCATCTCTTGCCAGTTACCACTTTGAAGCAATTCAACATATCATTCCCTTGGCAATCC 235
                              *   **          * **  **    *** ***  *  *     *     *

consensus_11732#0      CTGTTGATATCACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCAG--TA 2388
consensus_11732#2      CTGTTGAT--CACTCCTATATTCGGCACAGCAAATAAGCTGCTTGCAAACGATCAG--TA 190
consensus_11732#1      CTGTTG----CACCACGTTTTTTGTCA----AAATTATCTTGCTTCAACCTTTCATGCCA 287
                       ******    ***  *  * ** * **    **** * **   * *** *  ***    *

consensus_11732#0      GGGTGCTCGGTTTAGCAA----GCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATT 2444
consensus_11732#2      GGGTGCTCGGTTTAGCAA----GCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATT 246
consensus_11732#1      TGTTTATAGGTACAAAGACAATATCGAATCCCGCAGTTTAACCTTGCAAAAGCAAATCAA 347
                        * *  * ***  *   *          * *  ****  ***  ***** *  *  *   

consensus_11732#0      TTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAAC------GGGAAGTTAGGAA 2498
consensus_11732#2      TTGTTCGATCCTAAGATACTCCATGACAAGAAAAGCGAAAC------GGGAAGTTAGGAA 300
consensus_11732#1      CCGTTATGCTCCCATCCATTTGGAACCAGAGTTGACTAGTCTATCAGAAGGAGACAGGGA 407
                         ***     *  *   * *      **       * *  *        * **  *** *

consensus_11732#0      TAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGT 2558
consensus_11732#2      TAAATGGACAAGTTATCCATAAACAATAATGTTCATGTCTTATTTTTATATTTATTACGT 360
consensus_11732#1      AGCCTTGGGATATATTCTTAAAGCATCAATAGTTATTGATGACATCTTTTATGAGCAGGT 467
                           * *  *  *  **   ** **  ***  * **   * *  * * *  * *  * **

consensus_11732#0      CTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCAT-CAGACTGCTGTTGTT 2617
consensus_11732#2      CTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCAT-CAGACTGCTGTTGTT 419
consensus_11732#1      TTGGAATAGCAACTGCACGTTGTGAGGGGGGCTGAAAACATCGTGCTAACTACTCTTCTT 527
                        *   ** ** *    **    **            *  *** * *  *** ** ** **

consensus_11732#0      CTATGGTGCATGAGATGACCGGGGAAATCACGTGAAACTACACTGGATAGCAGTAATACA 2677
consensus_11732#2      CTAAAAAAAAAAAAAAAAAAAA-------------------------------------- 441
consensus_11732#1      TTGATAAGTTGAAGTGGTTAAATTATTCCATTTTTAAAAGGCCATGA------------- 574
                        *          *                                               

consensus_11732#0      CTGAT 2682
consensus_11732#2      -----
consensus_11732#1      -----