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Oryza sativa
cluster # 11745 cluster # 11745       Sequences # 9       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11745#0 length = 1473 sequences # 6  
consensus_11745#1 length = 795 sequences # 1  
 consensus_11745#2 length = 627 sequences # 1  
consensus_11745#3 length = 339 sequences # 1  
consensusID : consensus_11745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1473
fasta sequence 
                              [GCCAACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATACACCGCCCATGGCCGCCGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCAGAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACGCGCTGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGAAGGCCTCGACGTCGCCTTGGCGCAGCGGCACCGCAGGAACGGGGGTTCCAGGATCGCCGCCGCCGCCGCCGCCGTTGATGCGCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGCCGGGCACGATCCGGTCGGCGTCTCCGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGACGAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCACAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTGTTCGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATTTCTTCCTCTCTACCGTGGGATCTTTCAAGCCCATGCGAAATTCCCGGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTCTCTCACTGGGGACTGTCCAAACATTATCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTGTATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCAAAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGGTTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGAGTGTATATATGTGTGTCAGAAAGTATATAT-TTGTTTAATAATGAAATTCATTTCGACCT]

[+] EMBL AK099578             [GCCAACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATCCACCGCCCATGGCCGCCGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCAGAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACGCGCTGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGAAGGCCTCGACGTCGCCTTGGCGCAGCGGCACCGCAGGAACGGGGGTTCCAGGATCGCCGCCGCCGCCGCCGCCGTTGATGCGCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGCCGGGCACGATCCGGTCGGCGTCTCCGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGACGAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCACAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTGTTCGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCAAATGGACAACTAAGATATGTAGCCGGCGATGGGTTCACTACTCGCGCATTTCTTCCTCTATGTCGCGGGATCTTTCAAGCCCATGCGAAATTCCCAGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTTTCTCACTGGGGACTATCCAAACACTGTCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTATATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGTGTGTATATATGTGTGTCAGAAAGTATATATATTTTTTAATAATGAAATTCATTT      ]
[+] EMBL CB622545             [    ACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATACACCGCCCATGGCCGCCGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCAGAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACGCGCCGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGACGGCCTCGACGTCGCCTTCGCGCAGCGGCGCCGCAGGAACGGGGGTTCCAGGAT   CGCCGCCGCCGCCGCCGTTGATGCGCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGACGCGCACGATCCGGTCGGCGTCTCCGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGACGAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCACAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTCTTCGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB625919             [    ACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATACACCGCCCATGGCCGCCGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCAGAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACGCGCCGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGACGGCCTCGACGTCGCCTTCGCGCAGCGGCGCCGCAGGAACGGGGGTTCCAGGAT   CGCCGCCGCCGCCGCCGTTGATGCGCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGACGCGCACGATCCGGTCGGCGTCTCCGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGACGAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB680562             [                                                    ATGGCCGCCGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCAGAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACGCGCTGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGAAGGCCTCGACGTCGCCTTGGCGCAGCGGCACCGCAGGAACGGGGGTTCCAGGATCGCCGCCGCCGCCGCCGCCGTTGATGCGCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGCCGGGCACGATCCGGTCGGCGTCTCCGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGACGAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCACAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTGTTCGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCAAATGGACAACTAAGATATGTAGCCGGCGATGGGTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB625920             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATTTCTTCCTCTCTACCGTGGGATCTTTCAAGCCCATGCGAAATTCCCGGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTCTCTCACTGGGGACTGTCCAAACATTATCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTGTATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCAAAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGGTTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGAGTGTATATATGTGTGTCAGAAAGTATATAT TTGTTTAATAATGAAATTCAT        ]
[-] EMBL CB622546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCATGGACATGCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATTTCTTCCTCTCTACCGTGGGATCTTTCAAGCCCATGCGAAATTCCCGGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTCTCTCACTGGGGACTGTCCAAACATTATCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTGTATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCAAAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGGTTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGAGTGTATATATGTGTGTCAGAAAGTATATAT TTGTTTAATAATGAAATTCATTTCGACCT]




>consensus_11745#0
GCCAACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATACACCGCCCATGGCCGC
CGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCA
GAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACG
CGCTGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGAAGGCCTCGACGTCGCCTTGGC
GCAGCGGCACCGCAGGAACGGGGGTTCCAGGATCGCCGCCGCCGCCGCCGCCGTTGATGC
GCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGCCGGGCACGATCCGGTCGGCGTCTC
CGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGAC
GAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCA
CAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTGTT
CGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTA
CGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAG
AAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACAT
GCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATT
TCTTCCTCTCTACCGTGGGATCTTTCAAGCCCATGCGAAATTCCCGGGAGAGAAGAAGTT
TAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGA
TAAGTCTCTCTCACTGGGGACTGTCCAAACATTATCATGGAAGAGATGTGGCCTTATGTT
GCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTC
CATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACAC
TGCTTCTCCTTCTGCCTATGCGTCTGTATCGATTGGGAGATCAAAGTTGAACGGGAGTGC
AGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCAAAGCTTTGGCCGGCCCTG
GTTCTCTATTCAGATGAACAGCGGGTTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTT
CTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAA
TGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCA
AAATTTACAAAACAAAATTTGTGGACAGTGATGAGTGTATATATGTGTGTCAGAAAGTAT
ATATTTGTTTAATAATGAAATTCATTTCGACCT

consensusID : consensus_11745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence 
                              [GGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTTTCTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATAGCATCAAAATTTAGCTGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACAAACAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTATATCGGTGTGTCCAGTTTGTTCTACATAGCCCTTAACTGCAAATGAAACTTATTGTCCTAGCAAAAAAAAATCATGTAAGTTTTAACCTCTGTGATAATGCCTTTTTGTGTATTGCAGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGTGTGTATATATGTGTGTCAGAAAGTATATATATTTGGTAATAATGAAATTCATTTCGACCTTTGCTTCA]

[-] EMBL CB680563             [GGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTTTCTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATAGCATCAAAATTTAGCTGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACAAACAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTATATCGGTGTGTCCAGTTTGTTCTACATAGCCCTTAACTGCAAATGAAACTTATTGTCCTAGCAAAAAAAAATCATGTAAGTTTTAACCTCTGTGATAATGCCTTTTTGTGTATTGCAGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGTGTGTATATATGTGTGTCAGAAAGTATATATATTTGGTAATAATGAAATTCATTTCGACCTTTGCTTCA]




>consensus_11745#1
GGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTT
TCTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATA
GCATCAAAATTTAGCTGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACAAACA
GCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATGGAGTTGATCCATTCGG
TGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATG
CGTCTATATCGGTGTGTCCAGTTTGTTCTACATAGCCCTTAACTGCAAATGAAACTTATT
GTCCTAGCAAAAAAAAATCATGTAAGTTTTAACCTCTGTGATAATGCCTTTTTGTGTATT
GCAGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGT
TGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCT
GGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTAT
TACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGT
TGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACA
GTGATGTGTGTATATATGTGTGTCAGAAAGTATATATATTTGGTAATAATGAAATTCATT
TCGACCTTTGCTTCA

consensusID : consensus_11745#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence 
                              [CGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCAAATGGACAACTAAGATATGTAGCCGGCGATGGGTTCACTACTCGCGCATTTCTTCCTCTATGTCGCGGGATCTTTCAAGCCCATGCGAAATTCCCAGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTTTCTCACTGGGGACTATCCAAACACTGTCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTTTCTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATAGCATCAAAANNNAGCTGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACNNACAGCATATGCNNTACTTTCGNNNNNNNCCGTCCNNNNNNGTCCA]

[+] EMBL CF196827             [CGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAATTTCCAAATGGACAACTAAGATATGTAGCCGGCGATGGGTTCACTACTCGCGCATTTCTTCCTCTATGTCGCGGGATCTTTCAAGCCCATGCGAAATTCCCAGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAGTCTTTCTCACTGGGGACTATCCAAACACTGTCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTTTCTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATAGCATCAAAANNNAGCTGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACNNACAGCATATGCNNTACTTTCGNNNNNNNCCGTCCNNNNNNGTCCA]




>consensus_11745#2
CGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTACGGC
TTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAGAAGA
TGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACATGCAA
TTTCCAAATGGACAACTAAGATATGTAGCCGGCGATGGGTTCACTACTCGCGCATTTCTT
CCTCTATGTCGCGGGATCTTTCAAGCCCATGCGAAATTCCCAGGAGAGAAGAAGTTTAGT
TACTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGCCAGATAAG
TCTTTCTCACTGGGGACTATCCAAACACTGTCATGGAAGAGATGTGGCCTTATGTTGCAA
CCAGCCCTGCAATTCAGGCAAAATGTCTTGAACACCTCTGTTCTTTCTCATTCACACTGT
TCACCAATGATCCATAAATCAGATGTGATTGCGAATTCTAATATAGCATCAAAANNNAGC
TGAAATTGGCATCCAAAACTGACTGTCATTTCGTTCTGACNNACAGCATATGCNNTACTT
TCGNNNNNNNCCGTCCNNNNNNGTCCA

consensusID : consensus_11745#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence 
                              [CANGATGCCCGTTTGAGGNGGATCGTGGCNCANCTCCNTCTAGCTTCACCTTCTGTTTATGCGTCTATATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCATATCTCCTNTC]

[+] EMBL AA754467             [CANGATGCCCGTTTGAGGNGGATCGTGGCNCANCTCCNTCTAGCTTCACCTTCTGTTTATGCGTCTATATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCATATCTCCTNTC]




>consensus_11745#3
CANGATGCCCGTTTGAGGNGGATCGTGGCNCANCTCCNTCTAGCTTCACCTTCTGTTTAT
GCGTCTATATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTG
TTGAGAGTTGACGCTCCCCTCCATAGCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAAC
AGCGGTCTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTCAAACTGAACAATGCA
GAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGC
TTCTTTGTTGGTGATCGGTGGAATGCCATATCTCCTNTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GCCAACTTCCCACCCCCCAAACCTCACCGCCGCTCGATCCCATACACCGCCCATGGCCGC 60
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CGCCGCCGATGACCTCGCGCGCCGCCTCGCCGCGTTCATACCGCTCCCGCAGCCGCCGCA 120
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GAAGGAGCAGCTCTCCGGCGTGGCCGCGGCGGTGCTCGACGCCGGCGGCCGCCTCGGACG 180
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CGCTGTGGGCGACGTGTTCCGACGCCTGCGCATCGACGAAGGCCTCGACGTCGCCTTGGC 240
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GCAGCGGCACCGCAGGAACGGGGGTTCCAGGATCGCCGCCGCCGCCGCCGCCGTTGATGC 300
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GCGGGTCAGCAAGGACAGCGGCGGCGGCGGCGTCGCCGGGCACGATCCGGTCGGCGTCTC 360
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CGGCCGGTTCGCGCGGTCGCAGGGGAGCATGAACCTGTCGGCGACGTACGACAGCCGGAC 420
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GAGCGACGTGGAGAGCTCGGTGGTGGCGAGGGGGGACCTGTGGCGCGCCGAGGCGTCGCA 480
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CAGCAGCGCCGCCGCGGCCGCGCCGCCGCTGTTCATGGTGCAGCTCGGCCCGGTGCTGTT 540
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CGTGCGCGACACCACGCTGCTGTTCCCGGTGCACCTGTCCAAGCGCCATCTCATCTGGTA 600
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      ------------------------------------------------------------
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCCTGCTTACTGGTCAGCTCACAG 660
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      --------------------------GGCCTTATGTTGCAACCAGCCCTGCAATTCAGGC 34
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      AAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTTTACTTGTTCATTCATGGACAT 720
consensus_11745#2      ------------------------------------------------------------
                                                                                   

consensus_11745#1      AAAATGTCT---TGAACACCTCTGTTCTTTCTCATTCACACTGTTCACCAATGATCCATA 91
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GCAATTTCCGAACGGGCAACTAAGATATGTAGCCGGCGACGGCTTCACTACTCGCGCATT 780
consensus_11745#2      -------------------------CGCGACACCACGCTGCTGTTCCCGGTGCACCTGTC 35
                                                                                   

consensus_11745#1      AATCAGATGTGATTGCGAATTCTAATATAGCATCAAAATTTAGCTGAAATTGGCATCCAA 151
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      TCTTCCTCTCTACCGTGGGATCTTTCAAGCCCATGCGAAATTCCCGGGAGAGAAG---AA 837
consensus_11745#2      CAAGCGCCATCTCATCTGGTACGGCTTCGAGCGCAAGAATGGTGTGCATTCAGTCTGTCC 95
                                                                                   

consensus_11745#1      AACTGACTG-TCATTTCGTTCTGACAAACAGCATATGCCCTACTTTCGGTGGAAGCCGTC 210
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      GTTTAGTTA-CTCATTCAAGAACAGGAGTGGAGGAAGCATCACTCCAATGGTGCAGTGGC 896
consensus_11745#2      TGCTTACTGGTCAGCTCACAGAAGATGGTTCTTCATGTCAATGATTTGCCTAAATCCTTT 155
                                                                                   

consensus_11745#1      CGGGTTTGTCCATGG-AGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGC 269
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      CAGATAAGTCTCTCTCACTGGGGACTGTCCAAACATTATCATGGAAGAGATGTGGCCTTA 956
consensus_11745#2      TA--CTTGTTCATTCATGGACATGCAATTTCCAAATGGACAACTAAGATATGTAGCCGGC 213
                                                                                   

consensus_11745#1      TACTCTCACACTGCTTCTCCTTCTGCCTATGCGTCTATATCGGTGTGTCCAGTTTGTTCT 329
consensus_11745#3      ------------------------------------------------------------
consensus_11745#0      TGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTT 1016
consensus_11745#2      GATGGGTTCACTACTCGCGCATTTCTTCCTCTATGTCGCGGGATCTTTCAAGCCCATGCG 273
                                                                                   

consensus_11745#1      ACATAGCCCTTAACTGCAAATGAAACTTATTGTCCTAGCAAAAA-AAAATCATGTAAGTT 388
consensus_11745#3      -------------------------CANGATGCCC-GTTTGAGG-NGGATCGTGGCNCAN 33
consensus_11745#0      TGTC--CATGGAGTTGATCCATTCGGTGAATGAGAATGCTGGTG-TTGTTTGTGGCTACT 1073
consensus_11745#2      AAAT---TCCCAGGAGAGAAGAAGTTTAGTTACTCATTCAAGAACAGGAGTGGAGGAAGC 330
                                                     *                             

consensus_11745#1      TTAACCTCTGTGATAATGCCTTTTTGTGTAT---TGCAGATTGGGA--GATCAAAGTTGA 443
consensus_11745#3      CTCCNTCTAGCTTCACCTTCTGTTTATGCGTCTATATCGATTGGGA--GATCAAAGTTGA 91
consensus_11745#0      CTCACACT-GCTTCTCCTTCTGCCTATGCGTCTGTATCGATTGGGA--GATCAAAGTTGA 1130
consensus_11745#2      ATCACTCCAATGGTGCAGTGGCCAGATAAGTCTTTCTCACTGGGGACTATCCAAACACTG 390
                        *                        *   *   *     * ****     ****     

consensus_11745#1      ACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTG 503
consensus_11745#3      ACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCATAGCTTTG 151
consensus_11745#0      ACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCAAAGCTTTG 1190
consensus_11745#2      TCATGGAAGAGATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGGCAAAATGTCTTG 450
                        *  *   *      *  *     * *     **   **    **      *  *  ***

consensus_11745#1      GCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGT-TGT 562
consensus_11745#3      GCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGTCTGGAGTTCTGAACTTCTGGT-TGT 210
consensus_11745#0      GCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGGTTGGAGTTCTGAACTTCTGGT-TGT 1249
consensus_11745#2      AACACCTCTG-TTCTTT-CTCATTCACACTGTTCACCAATGATCCATAAATCAGATGTGA 508
                         *  * *** **** *  ***     ** *         * **   *  ** * * ** 

consensus_11745#1      TCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTAT 622
consensus_11745#3      TCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTAT 270
consensus_11745#0      TCAGTGTTTTTCTTCAAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTAT 1309
consensus_11745#2      TTGCGAATTCTAATATAGCATCAAAANNNAGCTGAAATTGGCATCCAAAACTGACTGT-- 566
                       *      ** *  *  * *   * **   **     ***    *  * **     ***  

consensus_11745#1      AGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGA 682
consensus_11745#3      AGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCATA 330
consensus_11745#0      AGACAGTCAAATGTTGCAGGAACCGATTGCTTCTTTGTTGGTGATCGGTGGAATGCCAGA 1369
consensus_11745#2      ---CATTTCGTTCTGACNNACAGCATATGCNNTACTTTCGNNNNNNNCCGTCCNNNNNNG 623
                          ** *    * *  *    * *   ***     * * *         *          

consensus_11745#1      TCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGTGTGTATATATGTGTG 742
consensus_11745#3      TCTCCTNTC--------------------------------------------------- 339
consensus_11745#0      TCTCCTAGCCAAAATTTACAAAACAAAATTTGTGGACAGTGATGAGTGTATATATGTGTG 1429
consensus_11745#2      TCCA-------------------------------------------------------- 627
                       **                                                          

consensus_11745#1      TCAGAAAGTATATATATTTGGTAATAATGAAATTCATTTCGACCTTTGCTTCA 795
consensus_11745#3      -----------------------------------------------------
consensus_11745#0      TCAGAAAGTATATAT-TTGTTTAATAATGAAATTCATTTCGACCT-------- 1473
consensus_11745#2      -----------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)