These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1175 fasta sequence [AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC-TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC-TGCTGGATGC-TGAGGATAAAACTAAGGACATCAAA-TTGTTTA-TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGC] [+] EMBL AK102473 [AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC TGCTGGATGC TGAGGATAAAACTAAGGACATCAAA TTGTTTA TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGC] [+] EMBL OSS11651A [ GGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTNGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTCTTTCCTCGGCTTCCCGGTGGATGATATGAGTTCTGATCTTATCATCAGCCAACTCTTNCTTGCTGGATGCTTGAGGATAAAACTAAGGACATCAAATTTGTTTATTTAACTTACCTGGAGGCTTCA ] [+] EMBL CB653406 [ TCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAACGCGGCGCCAAGAGCTACGGTCCGCGCATCCGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC TGCTGGATGC TGAGGATAAAACTAAGGACATCAAA TTGTTTA TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACACAATACTGTCAAGAATCAC ] [+] EMBL AF450251 [ cactaaaTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGGTCTTGCCAATTGCCATAC ] consensusID : consensus_11756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 867 fasta sequence [GAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCAAGTTATATTAAAAAAAAGCCTAGATTGTTCTCTTATGTTATGTATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN] [-] EMBL CB653407 [GAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTT ] [-] EMBL CA762916 [ gacaaggggGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAGTGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCCAGTAGCTGTAGCGCTCCTTAATTCTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTAaaaaaaaa ] [+] EMBL CB000409 [ TTTGGCAGGAGCTGTCCCTTCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCCCCAGAGGAGAAGCTTATTCATTATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTTTTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCAAGTTATATTAAAAAAAA ] [+] EMBL AU095919 [ TAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGNATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCTAGTTATATTACAACACTGCCTAGATTGTTCTCTTATGTTATGTATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN] [-] EMBL D42267 [ TTCCAATGCAATAACTCATGGCAATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11756#0 AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCT 60 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAG 120 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTC 180 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCA 240 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CCAACATGCTCCTTCGCCAGCGCATCGTCTTCCTCGGCTCCCCGGTGGATGATATGAGTG 300 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CTGATCTTATCATCAGCCAACTCTTGCTGCTGGATGCTGAGGATAAAACTAAGGACATCA 360 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 AATTGTTTATTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCA 420 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 TGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTG 480 consensus_11756#1 ------------------------------------------------------------ consensus_11756#0 CATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTA 540 consensus_11756#1 ----------------------------GAAGAGATTTTGCATGCCTAATGCGAGAATTA 32 ******************************** consensus_11756#0 TGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATAC 600 consensus_11756#1 TGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATAC 92 ************************************************************ consensus_11756#0 GAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGC 660 consensus_11756#1 GAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGC 152 ************************************************************ consensus_11756#0 CTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCA 720 consensus_11756#1 CTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCA 212 ************************************************************ consensus_11756#0 AGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTT 780 consensus_11756#1 AGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTT 272 ************************************************************ consensus_11756#0 TGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGAC 840 consensus_11756#1 TGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGAC 332 ************************************************************ consensus_11756#0 CAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATG 900 consensus_11756#1 CAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATG 392 ************************************************************ consensus_11756#0 GCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGT------- 953 consensus_11756#1 GCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTG 452 ***************************************************** consensus_11756#0 ------------------------------------------------------------ consensus_11756#1 CCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCT 512 consensus_11756#0 ----------------------------------TATTACACATTGTGAAGCTTAATGTA 979 consensus_11756#1 TACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTA 572 ************************** consensus_11756#0 GTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACT 1039 consensus_11756#1 GTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACT 632 ************************************************************ consensus_11756#0 GCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCA 1099 consensus_11756#1 GCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCA 692 ************************************************************ consensus_11756#0 TTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAA 1159 consensus_11756#1 TTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAA 752 ************************************************************ consensus_11756#0 AGAGAGAAAACCCAGC-------------------------------------------- 1175 consensus_11756#1 AGAGAGAAAACCCAGCAAGTTATATTAAAAAAAAGCCTAGATTGTTCTCTTATGTTATGT 812 **************** consensus_11756#0 ------------------------------------------------------- consensus_11756#1 ATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN 867 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||